Trimin1|352502|estExt_Genemark1.C_Ctg_1210046 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|352502
Unique Name	Trimin1\|352502\|estExt_Genemark1.C_Ctg_1210046
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	321

Homology

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BLAST of jgi.p|Trimin1|352502 vs. uniprot
Match: A0A836CLF1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLF1_9STRA)

HSP 1 Score: 218 bits (554), Expect = 1.830e-65
Identity = 320/320 (100.00%), Postives = 320/320 (100.00%), Query Frame = 0

Query:    1 MADDPIFSVAPNILGFLPPDAASSEHLDVLQWARANGCPWDENTCTFAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEWTYAXXXXXXXXXXXXXXXXXXXXXETCSCARRLSADFADNGXXXXXXXXXXXXXXEPMRPMYGNSSSEEYQTSDGGSYASDDSDQDFXXXXXXXXGIESSDQXSEGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAETDGKASPAREAREAGVFSESMEL 320
            MADDPIFSVAPNILGFLPPDAASSEHLDVLQWARANGCPWDENTCTFAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEWTYAXXXXXXXXXXXXXXXXXXXXXETCSCARRLSADFADNGXXXXXXXXXXXXXXEPMRPMYGNSSSEEYQTSDGGSYASDDSDQDFXXXXXXXXGIESSDQXSEGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAETDGKASPAREAREAGVFSESMEL
Sbjct:    1 MADDPIFSVAPNILGFLPPDAASSEHLDVLQWARANGCPWDENTCTFAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEWTYAXXXXXXXXXXXXXXXXXXXXXETCSCARRLSADFADNGXXXXXXXXXXXXXXEPMRPMYGNSSSEEYQTSDGGSYASDDSDQDFXXXXXXXXGIESSDQXSEGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAETDGKASPAREAREAGVFSESMEL 320

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BLAST of jgi.p|Trimin1|352502 vs. uniprot
Match: A0A835Z2C7_9STRA (SET domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2C7_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.160e-5
Identity = 24/37 (64.86%), Postives = 29/37 (78.38%), Query Frame = 0

Query:   13 ILGFLPPDAASSEHLDVLQWARANGCPWDENTCTFAA 49
            +L F+ P A +  HL VLQWARANGCPWDE+TC+F A
Sbjct:    1 MLYFVDPYAMTGAHLGVLQWARANGCPWDESTCSFPA 37

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BLAST of jgi.p|Trimin1|352502 vs. uniprot
Match: A0A835ZGX2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGX2_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 4.190e-5
Identity = 25/48 (52.08%), Postives = 32/48 (66.67%), Query Frame = 0

Query:    2 ADDPIFSVAPNILGFLPPD-------AASSEHLDVLQWARANGCPWDE 42
            AD P+ ++A +IL FLPP        AA +  L+VLQWA ANGCPWD+
Sbjct:   15 ADHPVLTLASHILAFLPPSIMEVCSAAAEAGDLEVLQWAHANGCPWDQ 62

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|352502 vs. uniprot

BLAST of jgi.p|Trimin1|352502 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
A0A836CLF1_9STRA	1.830e-65	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A835Z2C7_9STRA	1.160e-5	64.86	SET domain-containing protein n=1 Tax=Tribonema mi...	[more]
A0A835ZGX2_9STRA	4.190e-5	52.08	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 183..228
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 207..225
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 188..206
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 264..320
None	No IPR available	PANTHER	PTHR46586:SF3	ANKYRIN REPEAT-CONTAINING PROTEIN	coord: 21..256
None	No IPR available	PANTHER	PTHR46586	ANKYRIN REPEAT-CONTAINING PROTEIN	coord: 21..256
None	No IPR available	SUPERFAMILY	140860	Pseudo ankyrin repeat-like	coord: 99..180
None	No IPR available	SUPERFAMILY	140860	Pseudo ankyrin repeat-like	coord: 21..100

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_121	contig	Contig_121:403950..410329 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|352502	mRNA_15612	Tribonema minus UTEX_B_3156	mRNA	Contig_121 403950..410873 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|352502|estExt_Genemark1.C_Ctg_1210046 ID=Trimin1|352502|estExt_Genemark1.C_Ctg_1210046|Name=jgi.p|Trimin1|352502|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=321bp
MADDPIFSVAPNILGFLPPDAASSEHLDVLQWARANGCPWDENTCTFAAA
DGHLAAVQWARANGCLWDTFTTANAAAGGHLAVLQWAHANGCPWDECTCT
RAAREGHLQVLQWARANGCPWSEWTYAAKDGQLEVLQWARANGCPWDEET
CSCARRLSADFADNGHRHVVKWARANGCPEPMRPMYGNSSSEEYQTSDGG
SYASDDSDQDFSDEDTSDDGIESSDQESEGSAVVVAAAAAAAAAVAAAAA
AALAAAAAAAAAVWRKLDDDSGGDSDDDSDGERGSEAGGGGGGGDAETDG
KASPAREAREAGVFSESMEL*