Trimin1|352499|estExt_Genemark1.C_Ctg_1210019 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|352499
Unique NameTrimin1|352499|estExt_Genemark1.C_Ctg_1210019
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length230
Homology
BLAST of jgi.p|Trimin1|352499 vs. uniprot
Match: A0A836CLE6_9STRA (ADF-H domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLE6_9STRA)

HSP 1 Score: 400 bits (1028), Expect = 4.060e-140
Identity = 229/229 (100.00%), Postives = 229/229 (100.00%), Query Frame = 0
Query:    1 MQVGDAKALHTTQRSSGLDVSSPELAAAWQKVRSKSDSHWCLFGYGPGGNTQIVVTAAGSDGFEGLRSSLTDSMAAWAGLRVSVLGSTKFVRLAFIGTEIAGMKRAKASLHRNAVFHLFEGGHCDVTFDGDGGLDAFTSEAVVGAVAEALRVEPPXXXXXXXXXXXXXXXXXXCVIPRRRAWQHLXXXXXXXXARICAVGCLPQQQLEFVQWVPGRSSAILLRSVAHCH 229
            MQVGDAKALHTTQRSSGLDVSSPELAAAWQKVRSKSDSHWCLFGYGPGGNTQIVVTAAGSDGFEGLRSSLTDSMAAWAGLRVSVLGSTKFVRLAFIGTEIAGMKRAKASLHRNAVFHLFEGGHCDVTFDGDGGLDAFTSEAVVGAVAEALRVEPPXXXXXXXXXXXXXXXXXXCVIPRRRAWQHLXXXXXXXXARICAVGCLPQQQLEFVQWVPGRSSAILLRSVAHCH
Sbjct:    1 MQVGDAKALHTTQRSSGLDVSSPELAAAWQKVRSKSDSHWCLFGYGPGGNTQIVVTAAGSDGFEGLRSSLTDSMAAWAGLRVSVLGSTKFVRLAFIGTEIAGMKRAKASLHRNAVFHLFEGGHCDVTFDGDGGLDAFTSEAVVGAVAEALRVEPPXXXXXXXXXXXXXXXXXXCVIPRRRAWQHLXXXXXXXXARICAVGCLPQQQLEFVQWVPGRSSAILLRSVAHCH 229          
BLAST of jgi.p|Trimin1|352499 vs. uniprot
Match: D8LEM3_ECTSI (ADF-H domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEM3_ECTSI)

HSP 1 Score: 115 bits (289), Expect = 3.540e-29
Identity = 61/124 (49.19%), Postives = 84/124 (67.74%), Query Frame = 0
Query:    1 MQVGDAKALHTTQRSSGLDVSSPELAAAWQKVRSKSD--SHWCLFGYGPGGNTQIVVTAAGSDGFEGLRSSLTDSMAAWAGLRVSV-LGSTKFVRLAFIGTEIAGMKRAKASLHRNAVFHLFEG 121
            MQVG+AKALHTT+RSSG+DVS   LA AW  +R+  +  ++WC F Y  G N+ I +  +G  G   L S+L DSM A+ G+RV    GS +F R+ F+G E+ GMK+ +A+L +NAVF +FEG
Sbjct:    1 MQVGEAKALHTTKRSSGIDVSDASLAEAWASIRTDGEPQTNWCAFTYAEGSNSVIKLLGSGIGGVSELCSTLLDSMVAFCGVRVGDDKGSARFHRILFVGEEVGGMKKGRAALAKNAVFAVFEG 124          
BLAST of jgi.p|Trimin1|352499 vs. uniprot
Match: U5HB26_USTV1 (ADF-H domain-containing protein n=4 Tax=Microbotryum TaxID=34416 RepID=U5HB26_USTV1)

HSP 1 Score: 64.7 bits (156), Expect = 1.280e-9
Identity = 37/123 (30.08%), Postives = 71/123 (57.72%), Query Frame = 0
Query:   19 DVSSPELAAAWQKVRS-KSDSHWCLFGYGPGGNTQIVVTAAGSDGFEGLRSSLTDSMAAWAGLRVSVLGST-----KFVRLAFIGTEIAGMKRAKASLHRNAVFHLFEGGHCDVTFDGDGGLD 135
            DVSSP++AAA++ VR+ KS+++W L  Y    + ++ +TA G+ G + L++   D  A++A  R++          KF+ + +IG+ +  M++AK S+H++ V  +      +V  + +  LD
Sbjct:    3 DVSSPDIAAAYEDVRNDKSETNWLLLDYEGDKSDKLNLTATGTGGLDELKTKFADERASFAYARITYSNDKESTRDKFIFITYIGSGVRVMRKAKISIHKSEVQKVLRAFSIEVPAENEDDLD 125          
BLAST of jgi.p|Trimin1|352499 vs. uniprot
Match: A0A2N3NIT9_9PEZI (ADF-H domain-containing protein n=1 Tax=Lomentospora prolificans TaxID=41688 RepID=A0A2N3NIT9_9PEZI)

HSP 1 Score: 61.6 bits (148), Expect = 1.800e-8
Identity = 42/106 (39.62%), Postives = 58/106 (54.72%), Query Frame = 0
Query:   16 SGLDVSSPELAAAWQKVRSKSDS-HWCLFGYGPGGNTQIVVTAAGSDGFEGLRSSLTDSMAAWAGLRVSVLGST-----KFVRLAFIGTEIAGMKRAKASLHRNAV 115
            SGL+  SPE+A+A+  VRS  DS  W L G GP GN Q+ +T  GS G E L+  L DS   +A +RV     +     KFV + +IG     M++A+ S+    V
Sbjct:    2 SGLN--SPEIASAYDAVRSDKDSTDWLLIGNGPTGN-QLTLTKTGSGGLEELKKELDDSQVQYAYVRVEYANDSESKRVKFVLVIWIGNSTKVMRKARVSIESGEV 104          
BLAST of jgi.p|Trimin1|352499 vs. uniprot
Match: A0A0M0J779_9EUKA (Methionine-r-sulfoxide reductase n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0J779_9EUKA)

HSP 1 Score: 61.6 bits (148), Expect = 1.650e-7
Identity = 40/106 (37.74%), Postives = 56/106 (52.83%), Query Frame = 0
Query:   16 SGLDVSSPELAAAWQKVRSKSDSHWCLFGYGPGGNTQIVVTAAGSDGFEGLRSSLTDSMAAWAGLRVSVLGSTKFVRLAFIGTEIAGMKRAKASLHRNAVFHLFEG 121
            S LD+S PELAAAW + R+ + S WC+  Y  G  TQIV  A GSDGF+GLR++L +    +  L + V    + +   ++  E     R +A L    V  L  G
Sbjct:  169 SDLDLSDPELAAAWAETRALA-SGWCVCTYAEGSKTQIVPIARGSDGFDGLRAALLEDAINYGVLPLRVDERPRHIFFCYVVDE-----RVRAVLEGACVVELGAG 268          
BLAST of jgi.p|Trimin1|352499 vs. uniprot
Match: A0A7S4HCW9_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4HCW9_9EUKA)

HSP 1 Score: 57.0 bits (136), Expect = 1.170e-6
Identity = 35/111 (31.53%), Postives = 55/111 (49.55%), Query Frame = 0
Query:   16 SGLDVSSPELAAAWQKVRSKSDS--HWCLFGYGPGGNTQIVVTAAGSDGFEGLRSSLTDSMAAWAGLRVSVLG---STKFVRLAFIGTEIAGMKRAKASLHRNAVFHLFEG 121
            S +D+S PE+AAAW +    +     W   GY   G  ++   A+G+DG+ GLR+ L +    +   RV+  G   ++KF  +  IG    GM + +A+ H   V    EG
Sbjct:   20 SAVDMSDPEIAAAWAECVGSAPQVGAWIALGYE--GKAKLKRLASGTDGYRGLRAHLAEDAVVYGAFRVTTAGESTASKFTFVTSIGENAGGMVKGRATAHAQCVEAGLEG 128          
BLAST of jgi.p|Trimin1|352499 vs. uniprot
Match: A0A167S8S7_CALVF (Uncharacterized protein n=1 Tax=Calocera viscosa (strain TUFC12733) TaxID=1330018 RepID=A0A167S8S7_CALVF)

HSP 1 Score: 55.1 bits (131), Expect = 3.250e-5
Identity = 37/110 (33.64%), Postives = 62/110 (56.36%), Query Frame = 0
Query:   18 LDVSSPELAAAWQKVRSKSDSHWCLFGYGPGGNTQIVVTAAGSDGFEGLRSSLTDSMAAWAGLRVSVLGSTKFVRLAFIGTEIAGMKRAKASLHRNAVFHLFEGGHCDVT 127
            +D+S P + AA+ +V   + + W L GYG   N ++ +  AGS G E LR  L + +    GL ++V G  K + L ++   ++G+KRA+A +H  AV + F+  H  +T
Sbjct:    3 VDISDPNIPAAYSEVIGDAATDWLLIGYGDT-NNRLSLYEAGSRGLEELRGHLEEEVL--FGL-LNVEG--KILLLVYMPDNVSGVKRARALVHSRAVGNTFKAHHAVLT 106          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352499 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A836CLE6_9STRA4.060e-140100.00ADF-H domain-containing protein n=1 Tax=Tribonema ... [more]
D8LEM3_ECTSI3.540e-2949.19ADF-H domain-containing protein n=2 Tax=Ectocarpus... [more]
U5HB26_USTV11.280e-930.08ADF-H domain-containing protein n=4 Tax=Microbotry... [more]
A0A2N3NIT9_9PEZI1.800e-839.62ADF-H domain-containing protein n=1 Tax=Lomentospo... [more]
A0A0M0J779_9EUKA1.650e-737.74Methionine-r-sulfoxide reductase n=1 Tax=Chrysochr... [more]
A0A7S4HCW9_9EUKA1.170e-631.53Hypothetical protein n=1 Tax=Prymnesium polylepis ... [more]
A0A167S8S7_CALVF3.250e-533.64Uncharacterized protein n=1 Tax=Calocera viscosa (... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002108Actin-depolymerising factor homology domainPFAMPF00241Cofilin_ADFcoord: 26..128
e-value: 2.0E-6
score: 27.6
IPR002108Actin-depolymerising factor homology domainPROSITEPS51263ADF_Hcoord: 17..144
score: 9.80209
IPR029006ADF-H/Gelsolin-like domain superfamilyGENE3D3.40.20.10Severincoord: 17..145
e-value: 2.4E-16
score: 61.5
NoneNo IPR availableSUPERFAMILY55753Actin depolymerizing proteinscoord: 17..135

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_121contigContig_121:197215..201884 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352499mRNA_15596Tribonema minus UTEX_B_3156 mRNAContig_121 197215..201894 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|352499|estExt_Genemark1.C_Ctg_1210019 ID=Trimin1|352499|estExt_Genemark1.C_Ctg_1210019|Name=jgi.p|Trimin1|352499|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=230bp
MQVGDAKALHTTQRSSGLDVSSPELAAAWQKVRSKSDSHWCLFGYGPGGN
TQIVVTAAGSDGFEGLRSSLTDSMAAWAGLRVSVLGSTKFVRLAFIGTEI
AGMKRAKASLHRNAVFHLFEGGHCDVTFDGDGGLDAFTSEAVVGAVAEAL
RVEPPPAQPAAAAAAAAAAATLRCVIPRRRAWQHLSAAAAAAAARICAVG
CLPQQQLEFVQWVPGRSSAILLRSVAHCH*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002108ADF-H
IPR029006ADF-H/Gelsolin-like_dom_sf