Trimin1|352495|estExt_Genemark1.C_Ctg_1200050 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|352495
Unique Name	Trimin1\|352495\|estExt_Genemark1.C_Ctg_1200050
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	484

Homology

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BLAST of jgi.p|Trimin1|352495 vs. uniprot
Match: A0A835ZL64_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZL64_9STRA)

HSP 1 Score: 605 bits (1559), Expect = 1.170e-212
Identity = 483/483 (100.00%), Postives = 483/483 (100.00%), Query Frame = 0

Query:    1 MKRGGPDVRAMFKAAKEKGGGAAGKYSGRSKEELLEXXXXXXXXXXXXXXXXXXXXXXXXXPRPKPTAVAXXXXXXXSVAPARLPKKGTVEVSGALPLYASDDGSDAEPEAAPTAPRPVGLPPGFFDEEPAQPPGETAXXXXXXXXXXXAPARXAGXXXXXXXADGAGEAQQEGQQEESDAAPAHTAXXPGVTSSXXXXXXXXXXXXXXXXXXXSVPENELEKGQLPKGFFDDAEVDAKARGLDLAQEKQQEADAEWKEFSKFAAXXXXXXXXXXXXXXXEAKQAAEEGKQAEEEAELEDARLYPQPSGVKXXXXXXXXXXAVAVVNEQEREDMEQLTYQARLAGLMQQSEHVHRKRRRVDSSVTDVTDVTHADNGDMPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEELDDAGXXXXXXXXXEELAVLRDVSGARAPDDGAALEVSNMLRSKRKKRRQAEREAFEGDYVPLDPSDWRAKMF 483
            MKRGGPDVRAMFKAAKEKGGGAAGKYSGRSKEELLEXXXXXXXXXXXXXXXXXXXXXXXXXPRPKPTAVAXXXXXXXSVAPARLPKKGTVEVSGALPLYASDDGSDAEPEAAPTAPRPVGLPPGFFDEEPAQPPGETAXXXXXXXXXXXAPARXAGXXXXXXXADGAGEAQQEGQQEESDAAPAHTAXXPGVTSSXXXXXXXXXXXXXXXXXXXSVPENELEKGQLPKGFFDDAEVDAKARGLDLAQEKQQEADAEWKEFSKFAAXXXXXXXXXXXXXXXEAKQAAEEGKQAEEEAELEDARLYPQPSGVKXXXXXXXXXXAVAVVNEQEREDMEQLTYQARLAGLMQQSEHVHRKRRRVDSSVTDVTDVTHADNGDMPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEELDDAGXXXXXXXXXEELAVLRDVSGARAPDDGAALEVSNMLRSKRKKRRQAEREAFEGDYVPLDPSDWRAKMF
Sbjct:    1 MKRGGPDVRAMFKAAKEKGGGAAGKYSGRSKEELLEXXXXXXXXXXXXXXXXXXXXXXXXXPRPKPTAVAXXXXXXXSVAPARLPKKGTVEVSGALPLYASDDGSDAEPEAAPTAPRPVGLPPGFFDEEPAQPPGETAXXXXXXXXXXXAPARXAGXXXXXXXADGAGEAQQEGQQEESDAAPAHTAXXPGVTSSXXXXXXXXXXXXXXXXXXXSVPENELEKGQLPKGFFDDAEVDAKARGLDLAQEKQQEADAEWKEFSKFAAXXXXXXXXXXXXXXXEAKQAAEEGKQAEEEAELEDARLYPQPSGVKXXXXXXXXXXAVAVVNEQEREDMEQLTYQARLAGLMQQSEHVHRKRRRVDSSVTDVTDVTHADNGDMPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEELDDAGXXXXXXXXXEELAVLRDVSGARAPDDGAALEVSNMLRSKRKKRRQAEREAFEGDYVPLDPSDWRAKMF 483

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BLAST of jgi.p|Trimin1|352495 vs. uniprot
Match: W7TUP1_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TUP1_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 1.160e-8
Identity = 80/270 (29.63%), Postives = 109/270 (40.37%), Query Frame = 0

Query:  226 LPKGFFDDAEVDAKARGLDLAQEKQQEADAEWKEFSKFAAXXXXXXXXXXXXXXXEAKQAAEEGKQAEEEAELEDARLYPQPSGVKXXXXXXXXXXAVAVVNEQEREDMEQLTYQARLAGLMQQSEHVHRKRRRVDSSVTDVTDVTHADNGDMPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEELDDAGXXXXXXXXXEE---LAVLRDVSG---ARAPDDG------AALEVSNMLRSKRKKRRQAEREAFEGDYVPLDPSDWRAKMF 483
            LP GFFDD E DA A  +DL  +K+ EA  EW++F KFAA                    AE G++A EE E                              E+ R+++E L Y ARLAGL+  S     +R +               +G+  XXXXX                        E + ++G         E     AV  D  G    R  D+G      AALE+S MLR K++++++A +E  +  YV  DP DWRAK F
Sbjct:  215 LPTGFFDDPEADALAHNIDLNAQKEAEARKEWEDFQKFAADVA----------------VAEAGQEAVEEEEW---------------------------XXEERRKELEHLYYTARLAGLIATSGEATERRMK-----------KRGKDGEXXXXXXXMKKG--------------------EAVSNSGALPGVPSKAEAPTWRAVPEDEDGDGKERVGDEGREKETVAALEISAMLREKKRRKKEAMQEVVQDGYVAPDPLDWRAKSF 410

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|352495 vs. uniprot

BLAST of jgi.p|Trimin1|352495 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A835ZL64_9STRA	1.170e-212	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
W7TUP1_9STRA	1.160e-8	29.63	Uncharacterized protein n=2 Tax=Monodopsidaceae Ta...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 310..332
None	No IPR available	COILS	Coil	Coil	coord: 444..464
None	No IPR available	COILS	Coil	Coil	coord: 275..302
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 282..315
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 48..242
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 399..418
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 282..301
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 225..242
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 350..365
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 350..383

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_120	contig	Contig_120:436465..442800 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|352495	mRNA_14730	Tribonema minus UTEX_B_3156	mRNA	Contig_120 436465..442800 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|352495|estExt_Genemark1.C_Ctg_1200050 ID=Trimin1|352495|estExt_Genemark1.C_Ctg_1200050|Name=jgi.p|Trimin1|352495|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=484bp
MKRGGPDVRAMFKAAKEKGGGAAGKYSGRSKEELLELLKAKKAAAAAAAA
AAAAAPAKPAAPRPKPTAVAKPSAPAPSVAPARLPKKGTVEVSGALPLYA
SDDGSDAEPEAAPTAPRPVGLPPGFFDEEPAQPPGETAETAETAAAAAAA
PARPAGLPAGFFDADGAGEAQQEGQQEESDAAPAHTAAAPGVTSSGVPPD
FFDAAAAEEEGEEGSVPENELEKGQLPKGFFDDAEVDAKARGLDLAQEKQ
QEADAEWKEFSKFAAEEVAAEWKEFSKFAAEAKQAAEEGKQAEEEAELED
ARLYPQPSGVKQAEEEVELEEAVAVVNEQEREDMEQLTYQARLAGLMQQS
EHVHRKRRRVDSSVTDVTDVTHADNGDMPPPPAAVAAAAAAAAAAAAAAA
SAAGAAGGEELDDAGTAKAAAAAAEELAVLRDVSGARAPDDGAALEVSNM
LRSKRKKRRQAEREAFEGDYVPLDPSDWRAKMF*