Trimin1|352394|estExt_Genemark1.C_Ctg_1180017 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|352394
Unique NameTrimin1|352394|estExt_Genemark1.C_Ctg_1180017
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length323
Homology
BLAST of jgi.p|Trimin1|352394 vs. uniprot
Match: A0A835ZFG0_9STRA (Ribonuclease P n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFG0_9STRA)

HSP 1 Score: 623 bits (1607), Expect = 2.940e-225
Identity = 322/322 (100.00%), Postives = 322/322 (100.00%), Query Frame = 0
Query:    1 MHCYRVDGPLLEILEWLRGATFAVLPGGKLVYSLDREAFQTLGLPAKAVRPASTSRRPGGDKPRRYFGSADLHSKSFRPGKPLHDRLVQCLAKGARAETMLVWDGGGAGAFPASLAATRVAMEPHARVFQRVCCPQLRRAALTPALPPRERCRLIADMFAWLGVVACGLEDLLARPPLEPYVSSFEVPAGLAYGGSGARVCRVRLRGLIPVQYARTRAAAVTPTSAALHVLRLCSKAAQAAAATAADIAKTTGAWAAVTTWGFQDCPGVVDGRGEAVAHAGGDSILAVIAIGGGGXXXXXDVAGGGGVSLAVVDAQCLRPLP 322
            MHCYRVDGPLLEILEWLRGATFAVLPGGKLVYSLDREAFQTLGLPAKAVRPASTSRRPGGDKPRRYFGSADLHSKSFRPGKPLHDRLVQCLAKGARAETMLVWDGGGAGAFPASLAATRVAMEPHARVFQRVCCPQLRRAALTPALPPRERCRLIADMFAWLGVVACGLEDLLARPPLEPYVSSFEVPAGLAYGGSGARVCRVRLRGLIPVQYARTRAAAVTPTSAALHVLRLCSKAAQAAAATAADIAKTTGAWAAVTTWGFQDCPGVVDGRGEAVAHAGGDSILAVIAIGGGGXXXXXDVAGGGGVSLAVVDAQCLRPLP
Sbjct:    1 MHCYRVDGPLLEILEWLRGATFAVLPGGKLVYSLDREAFQTLGLPAKAVRPASTSRRPGGDKPRRYFGSADLHSKSFRPGKPLHDRLVQCLAKGARAETMLVWDGGGAGAFPASLAATRVAMEPHARVFQRVCCPQLRRAALTPALPPRERCRLIADMFAWLGVVACGLEDLLARPPLEPYVSSFEVPAGLAYGGSGARVCRVRLRGLIPVQYARTRAAAVTPTSAALHVLRLCSKAAQAAAATAADIAKTTGAWAAVTTWGFQDCPGVVDGRGEAVAHAGGDSILAVIAIGGGGXXXXXDVAGGGGVSLAVVDAQCLRPLP 322          
BLAST of jgi.p|Trimin1|352394 vs. uniprot
Match: A0A6H5K807_9PHAE (Cyclic nucleotide-binding domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K807_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 9.200e-11
Identity = 48/121 (39.67%), Postives = 61/121 (50.41%), Query Frame = 0
Query:   19 GATFAVLPGGKLVYSLDREAFQT------LGLP--AKAVRPASTSRRPGGDK----------------PRRYFGSADLHSKSFRPGKPLHDRLVQCLAK--------GARAETMLVWDGGG 107
            G +FA+LPGG LV SLDRE+FQ       + LP  A A RP    +R G                   P RY  + DL +KSFRPGKPLHDR++ CL+         GA  + ++ W G G
Sbjct:  149 GNSFAILPGGVLVLSLDRESFQASISGFRICLPGEAAATRPNGKGKRAGAGAGSTGGSVGVLGGSAGGPDRYVSAVDLSAKSFRPGKPLHDRVLSCLSSCRWGSGDDGAAVDMVVHWCGSG 269          
BLAST of jgi.p|Trimin1|352394 vs. uniprot
Match: A0A0L0HUD1_SPIPD (Uncharacterized protein n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HUD1_SPIPD)

HSP 1 Score: 70.9 bits (172), Expect = 4.300e-10
Identity = 69/265 (26.04%), Postives = 111/265 (41.89%), Query Frame = 0
Query:   21 TFAVLPGGKLVYSLDREAFQTLGLPAKAVRPASTSRRPGGDKPRRYFGSADLHSKSFRPGKPLHDRLVQC-----------LAKGARAETMLVWDGGGAGAFPASLAATRVAMEPHARVFQRVCCPQLRRAALTPALPPRERCR------LIADMFAWLGVVACGLEDLLARPPLEPYVSSFEVPAGLAYGGSGARVCRVRLRGLIPVQYARTRAAAVTPTSAALHVLRLCSKAAQAAAATAADIAKTTGA-WAAVTTWGFQDCP 267
            TFA+LP G+LV S+ ++ ++TLGL     RP+       GDK  RYF   DL   +F+P   L++R+  C           L      ET L  +     +FP ++ ATRV ++   +  + +  PQ+   A    L  +   +         ++F WLG++ACG   + A   ++P+ S +  P     G + +    VR  G +                    ++R+             D  K  G  WAA+  WGF+D P
Sbjct:  101 TFALLPSGRLVMSVKKDTYETLGL---VGRPSKF-----GDKGNRYFIHIDLAQPAFKPKGKLYERVKWCFTHTLTDTYDFLMSFTDTETRLSSEI----SFPPNVKATRVCIDGVCQTHENIMVPQIGDIAFEDLLNDQNDRKGEIWRDHALNLFEWLGLLACGAARIKAGDNVDPFFSVYSAPEPSKPGTTVS----VRWTGYLTTH----------------QIVRIKDS--------VKDCMKKEGLPWAAILVWGFRDAP 325          
BLAST of jgi.p|Trimin1|352394 vs. uniprot
Match: D0P414_PHYIT (Uncharacterized protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0P414_PHYIT)

HSP 1 Score: 60.8 bits (146), Expect = 1.020e-6
Identity = 68/260 (26.15%), Postives = 102/260 (39.23%), Query Frame = 0
Query:   24 VLPGGKLVYSLDREAFQTLGLPAKAVRPA--STSRRPGGDKPRRYFGSADLHSKSFRPGK--PLHDRLVQCLAKGARAETMLVWDGGGAGAFPASLAA-------TRVAMEPHARVFQRVCCPQL----RRAALTPALPPRERCRL---IADMFAWLGVVACGLEDLLARPPLEPYVSSFEVPAGLAYGGSGARVCRVRLRGLIPVQYARTRAAAVTPTSAALHVLRLCSKAAQAAAATAADIAKTTGAWAAVTTWGFQD 265
            +LP G+L+  +D + +Q LG+  +    A  +TSR     + ++Y  + DL S +F   +     DR+ +CL+       ML+      G+    L         +RV +      F  V  P+     +  A        +   L   + + + WLGVVACGL DLL R  LE YVS+F           G  +  VR RGL+   +  T    V  +                       +      WAAVT WGF D
Sbjct:  132 LLPSGQLLLLVDADTYQQLGIVGEKYGKAVPATSRSAHVKQAQKYVITLDLTSSTFAGEEVNTFRDRVRKCLSTKLEDLEMLLCAYNQRGSARTILFGDDDQIPRSRVELNAKMTTFSDVFLPKFDAFYKEIAAVEKRGAEDGNTLRTSLQEAYDWLGVVACGLTDLLQRQKLEEYVSTFTGIPDSFESVPGDEITTVRWRGLLAAPFCSTIVEKVQRS-----------------------VKNAELPWAAVTVWGFPD 368          
BLAST of jgi.p|Trimin1|352394 vs. uniprot
Match: A0A329SLA0_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SLA0_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 3.380e-6
Identity = 73/262 (27.86%), Postives = 104/262 (39.69%), Query Frame = 0
Query:   24 VLPGGKLVYSLDREAFQTLGLPAKAVRPA--STSRRPGGDKPRRYFGSADLHSKSF--RPGKPLHDRLVQCLAKGARAETMLVWDGGGAGAFPASLAA-------TRVAMEPHARVFQRVCCPQLRRAALTPALPPRERCRLIADM--------FAWLGVVACGLEDLLARPPLEPYVSSFE-VPAGLAYGGSGARVCRVRLRGLIPVQYARTRAAAVTPTSAALHVLRLCSKAAQAAAATAADIAKTTGAWAAVTTWGFQD 265
            +LP G+L+  +D E +Q LG+  +    A  +TSR     + ++Y  + DL S +F         DR+ +CL+       ML+      G+    L         +RV +      F  V  P+   A  T      ER    +D         + WLG+VACGL DLL R   E YVS+F  +P       SG+ +  VR RGL+   +  T    V     A+    L                     W AVT WGF D
Sbjct:  132 LLPSGQLLLLVDVETYQQLGIVGEKYGKAVPATSRSAHVKRAQKYVITLDLTSPTFAGEGENTFRDRVRKCLSTKLEDLEMLLCAYNQRGSARTILFGDDDQIPRSRVELNAKMTTFSDVFLPKFD-AFYTELNEAEERGEEDSDKLRTSLQEAYDWLGLVACGLTDLLQRQKPEEYVSTFTGIPESFECE-SGSEITTVRWRGLLAAPFCST---IVEKVQRAVKSGEL--------------------PWGAVTVWGFPD 368          
BLAST of jgi.p|Trimin1|352394 vs. uniprot
Match: A0A225WSU4_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WSU4_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 8.040e-6
Identity = 68/261 (26.05%), Postives = 105/261 (40.23%), Query Frame = 0
Query:   24 VLPGGKLVYSLDREAFQTLGLPAKAVRPASTSR-RPGGDKPRRYFGSADLHSKSFRPGKPLH-DRLVQCLAKGARAETMLVWDGGGAGAFPASLAA-------TRVAMEPHARVFQRVCCPQLRRAALTPALPPR--------ERCRL-IADMFAWLGVVACGLEDLLARPPLEPYVSSF-EVPAGLAYGGSGARVCRVRLRGLIPVQYARTRAAAVTPTSAALHVLRLCSKAAQAAAATAADIAKTTGAWAAVTTWGFQD 265
            +LP G+L+  +D E +Q LG+  +    A  ++ R    + ++Y  + DL S +F   +  H DR+ +CL+       ML+      GA    L         +RV +      F  V  P+    A    L  R        ++ R  + + + WLG+VACGL DLL R  +E YVS+F  +P         + +  VR RGLI   +  T    V     +  +                        W A+T WGF D
Sbjct:  132 LLPSGQLLLLVDAETYQQLGIVGEKYGKAVPAKSRSAHKRAQKYVITLDLTSSTFADEENEHRDRVRKCLSTKLEDLEMLLCAYNQRGAARTILFGDDDQIPRSRVELNAKMTTFDEVFLPKF--DAFYKELGVRHERGDDDGDKLRTSLQETYDWLGLVACGLTDLLQRQKMEEYVSTFIGIPDSFECEPE-SEITTVRWRGLIAAPFCSTIVEKVQRAVKSGEI-----------------------PWGAITVWGFPD 366          
BLAST of jgi.p|Trimin1|352394 vs. uniprot
Match: V9ENX6_PHYPR (Uncharacterized protein n=10 Tax=Phytophthora TaxID=4783 RepID=V9ENX6_PHYPR)

HSP 1 Score: 57.8 bits (138), Expect = 1.070e-5
Identity = 69/262 (26.34%), Postives = 101/262 (38.55%), Query Frame = 0
Query:   24 VLPGGKLVYSLDREAFQTLGLPAKAVRPA--STSRRPGGDKPRRYFGSADLHSKSFRP--GKPLHDRLVQCLAKGARAETMLVWDGGGAGAFPASLAA-------TRVAMEPHARVFQRVCCPQLRRAALTPALPPRERCR---------LIADMFAWLGVVACGLEDLLARPPLEPYVSSFEVPAGLAYGGSGARVCRVRLRGLIPVQYARTRAAAVTPTSAALHVLRLCSKAAQAAAATAADIAKTTGAWAAVTTWGFQD 265
            +LP G+L+  +D E +Q LG+  +    +  +TSR     + ++Y  + DL S +F    G    DR+ +CL        ML+      G+    L         +RV +      F  V  P+    A    L   E             + + + WLG+VACGL DLL R   E YVS+F            + +  VR RGL+   +  T    V     A++   L                     WAAVT WGF D
Sbjct:  129 LLPSGQLLLLVDVETYQQLGIVGEKYGKSIPTTSRSAHVKRAQKYVITLDLTSSAFTEEGGNTFRDRVRKCLNSKLEDLDMLLCAYNQRGSARTILFGDDDQIPRSRVELNAKITTFSDVFLPKF--GAFYTELGANEEHAEEDGDTLRTSLQEAYDWLGLVACGLTDLLQRQKPEEYVSTFTGIPDSFECEPDSEITTVRWRGLLAAPFCST---IVEKVQRAVNSGEL--------------------PWAAVTVWGFPD 365          
BLAST of jgi.p|Trimin1|352394 vs. uniprot
Match: A0A8C4ZQZ5_GADMO (Ribonuclease P/MRP 40 subunit n=1 Tax=Gadus morhua TaxID=8049 RepID=A0A8C4ZQZ5_GADMO)

HSP 1 Score: 57.0 bits (136), Expect = 1.770e-5
Identity = 30/72 (41.67%), Postives = 43/72 (59.72%), Query Frame = 0
Query:   22 FAVLPGGKLVYSLDREAFQTLGLPAKAVRPASTSRRPGGDKPRRYFGSADLHSKSFRPGKPLHDRLVQCLAK 93
            FA+LP GKLV S+D++ ++TLGL  K   P+   RRP G    RY  S DL  ++  PG   H R+++ L +
Sbjct:  132 FALLPNGKLVLSVDKDTYETLGLEGK---PSQYQRRPAG----RYVVSVDLKDRTMSPGGKGHQRVLKALTE 196          
BLAST of jgi.p|Trimin1|352394 vs. uniprot
Match: A0A0P1AFZ1_PLAHL (RPP40 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AFZ1_PLAHL)

HSP 1 Score: 55.1 bits (131), Expect = 7.910e-5
Identity = 68/259 (26.25%), Postives = 101/259 (39.00%), Query Frame = 0
Query:   24 VLPGGKLVYSLDREAFQTLGLPAKAVRPA--STSRRPGGDKPRRYFGSADLHSKSFRPGKP--LHDRLVQCLAKGARAETMLVWDGGGAGAFPASLAA------TRVAMEPHARVFQRVCCPQL----RRAALTPALPPRERCRL---IADMFAWLGVVACGLEDLLARPPLEPYVSSFEVPAGLAYGGSGARVCRVRLRGLIPVQYARTRAAAVTPTSAALHVLRLCSKAAQAAAATAADIAKTTGAWAAVTTWGFQD 265
            +LP G+L+  +D + +Q LGL  +    A  +  R     + ++Y  + DL S +F   K   + D++  CL    +   ML+      GA    L        +R+ +      F  +  P              L  R+  +L   + + + WLG+VACGL DLL R   E YVS+F          S   +  VR RGL+   +  T    V      L V R              D+      W AVT WGF D
Sbjct:  120 LLPSGQLLLLVDVDTYQQLGLVGEKYGKALPAACRSAHQKRAQKYVITLDLTSPTFAEDKENKVRDKVRTCLRTKLQDLNMLLCAYNQRGALRTILFEHDQIHRSRLELNADLTTFSDIFLPHFDAFYSNLCALEELGERDGEKLRTSLHEAYEWLGLVACGLTDLLKREKPEDYVSTFTGIPDSFECESACEITTVRWRGLLAAPFCNTIVKKVQ-----LAVKR-------------GDLP-----WGAVTVWGFPD 355          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352394 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A835ZFG0_9STRA2.940e-225100.00Ribonuclease P n=1 Tax=Tribonema minus TaxID=30337... [more]
A0A6H5K807_9PHAE9.200e-1139.67Cyclic nucleotide-binding domain-containing protei... [more]
A0A0L0HUD1_SPIPD4.300e-1026.04Uncharacterized protein n=2 Tax=Spizellomyces TaxI... [more]
D0P414_PHYIT1.020e-626.15Uncharacterized protein n=2 Tax=Phytophthora infes... [more]
A0A329SLA0_9STRA3.380e-627.86Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A225WSU4_9STRA8.040e-626.05Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
V9ENX6_PHYPR1.070e-526.34Uncharacterized protein n=10 Tax=Phytophthora TaxI... [more]
A0A8C4ZQZ5_GADMO1.770e-541.67Ribonuclease P/MRP 40 subunit n=1 Tax=Gadus morhua... [more]
A0A0P1AFZ1_PLAHL7.910e-526.25RPP40 n=1 Tax=Plasmopara halstedii TaxID=4781 RepI... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013893Ribonuclease P protein subunit Rpp40PFAMPF08584Ribonuc_P_40coord: 20..283
e-value: 9.9E-23
score: 80.9
IPR013893Ribonuclease P protein subunit Rpp40PANTHERPTHR15396RIBONUCLEASE P PROTEIN SUBUNIT P40coord: 20..286

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_118contigContig_118:168237..170250 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352394mRNA_13241Tribonema minus UTEX_B_3156 mRNAContig_118 168237..170250 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|352394|estExt_Genemark1.C_Ctg_1180017 ID=Trimin1|352394|estExt_Genemark1.C_Ctg_1180017|Name=jgi.p|Trimin1|352394|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=323bp
MHCYRVDGPLLEILEWLRGATFAVLPGGKLVYSLDREAFQTLGLPAKAVR
PASTSRRPGGDKPRRYFGSADLHSKSFRPGKPLHDRLVQCLAKGARAETM
LVWDGGGAGAFPASLAATRVAMEPHARVFQRVCCPQLRRAALTPALPPRE
RCRLIADMFAWLGVVACGLEDLLARPPLEPYVSSFEVPAGLAYGGSGARV
CRVRLRGLIPVQYARTRAAAVTPTSAALHVLRLCSKAAQAAAATAADIAK
TTGAWAAVTTWGFQDCPGVVDGRGEAVAHAGGDSILAVIAIGGGGEGQGQ
DVAGGGGVSLAVVDAQCLRPLP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013893RNase_P_Rpp40