Trimin1|352388|estExt_Genemark1.C_Ctg_1180011 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|352388
Unique Name	Trimin1\|352388\|estExt_Genemark1.C_Ctg_1180011
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	830

Homology

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BLAST of jgi.p|Trimin1|352388 vs. uniprot
Match: A0A835ZF96_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF96_9STRA)

HSP 1 Score: 832 bits (2149), Expect = 2.690e-291
Identity = 829/829 (100.00%), Postives = 829/829 (100.00%), Query Frame = 0

Query:    1 MVDKRVKDSSRDGRDRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGXGDSRGKERSTXXXXXXXXXXSGGARSKSPAKSRSXXXXXXXXXXXXXXXXXXXGSXXXAXEKESSRDKERGSDSRRSARSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARRGSIGQDESAPSTTVAILGLAAGVTERMLTRALERFRPIAVRVPSGGRGAAFADFASAADAQDAVRARLEVGGAPARAEFARSGAHGGGGRDRAWECGKCAVLNFADRAVCYCCRGTRDGXXXXXXXXXXXXXXXXXXXXXXXXXVGSRGGRSRDALAALESSAATNVLLLRGLSLATTAEQVHRIRDFVPVITEKLRVYAPIAAVRVLHDPRTRAPCGAAAVEFATREHASHTLSTAASAHPPLAIAGIEPALAYARVAKAGSARSXXXXXXXXXXXXXXXXXXXXXXALMEADARSKELEKLRGTLGEVRAGPGGVVPAIFAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAKAKKEEQTYSWPPSFEAAGAAYVLDPASAYFYXXXXXXXXXPKSRLYFINEAWYTHVPGGAPPFVLASXXXXXXXXXXXASSEPNGGRELAAAQAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERADAGETLAAARXXXXXXXXXXXAAKAAQLSAAEAKVEAALREANALLAKQQHAKHAAXXXXXXXXXXXXXXXXXXXXXXXXXAGVGFACLLCARGFATAEQLQKHERKSKLHADNLAKREAGLL 829
            MVDKRVKDSSRDGRDRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGXGDSRGKERSTXXXXXXXXXXSGGARSKSPAKSRSXXXXXXXXXXXXXXXXXXXGSXXXAXEKESSRDKERGSDSRRSARSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARRGSIGQDESAPSTTVAILGLAAGVTERMLTRALERFRPIAVRVPSGGRGAAFADFASAADAQDAVRARLEVGGAPARAEFARSGAHGGGGRDRAWECGKCAVLNFADRAVCYCCRGTRDGXXXXXXXXXXXXXXXXXXXXXXXXXVGSRGGRSRDALAALESSAATNVLLLRGLSLATTAEQVHRIRDFVPVITEKLRVYAPIAAVRVLHDPRTRAPCGAAAVEFATREHASHTLSTAASAHPPLAIAGIEPALAYARVAKAGSARSXXXXXXXXXXXXXXXXXXXXXXALMEADARSKELEKLRGTLGEVRAGPGGVVPAIFAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAKAKKEEQTYSWPPSFEAAGAAYVLDPASAYFYXXXXXXXXXPKSRLYFINEAWYTHVPGGAPPFVLASXXXXXXXXXXXASSEPNGGRELAAAQAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERADAGETLAAARXXXXXXXXXXXAAKAAQLSAAEAKVEAALREANALLAKQQHAKHAAXXXXXXXXXXXXXXXXXXXXXXXXXAGVGFACLLCARGFATAEQLQKHERKSKLHADNLAKREAGLL
Sbjct:    1 MVDKRVKDSSRDGRDRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGXGDSRGKERSTXXXXXXXXXXSGGARSKSPAKSRSXXXXXXXXXXXXXXXXXXXGSXXXAXEKESSRDKERGSDSRRSARSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARRGSIGQDESAPSTTVAILGLAAGVTERMLTRALERFRPIAVRVPSGGRGAAFADFASAADAQDAVRARLEVGGAPARAEFARSGAHGGGGRDRAWECGKCAVLNFADRAVCYCCRGTRDGXXXXXXXXXXXXXXXXXXXXXXXXXVGSRGGRSRDALAALESSAATNVLLLRGLSLATTAEQVHRIRDFVPVITEKLRVYAPIAAVRVLHDPRTRAPCGAAAVEFATREHASHTLSTAASAHPPLAIAGIEPALAYARVAKAGSARSXXXXXXXXXXXXXXXXXXXXXXALMEADARSKELEKLRGTLGEVRAGPGGVVPAIFAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAKAKKEEQTYSWPPSFEAAGAAYVLDPASAYFYXXXXXXXXXPKSRLYFINEAWYTHVPGGAPPFVLASXXXXXXXXXXXASSEPNGGRELAAAQAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERADAGETLAAARXXXXXXXXXXXAAKAAQLSAAEAKVEAALREANALLAKQQHAKHAAXXXXXXXXXXXXXXXXXXXXXXXXXAGVGFACLLCARGFATAEQLQKHERKSKLHADNLAKREAGLL 829

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BLAST of jgi.p|Trimin1|352388 vs. uniprot
Match: D7G7L5_ECTSI (RanBP, RRM1, C2H2 zinc finger protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7L5_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 9.600e-6
Identity = 28/65 (43.08%), Postives = 34/65 (52.31%), Query Frame = 0

Query:  546 AKAKKEEQTYSWPPSFEAAGAAYVLDPASAYFYXXXXXXXXXPKSRLYFINEAWYTHVPGGAPPF 610
            A  +K+     WPP FE AGAAY+ D  S YFY         P+S+LY     WY+H PG  P F
Sbjct:  344 AALQKKLNPPDWPPPFEEAGAAYLFDGPSGYFYESTTGVYYDPRSKLYCKGMVWYSHTPGQDPAF 408

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|352388 vs. uniprot

BLAST of jgi.p|Trimin1|352388 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A835ZF96_9STRA	2.690e-291	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
D7G7L5_ECTSI	9.600e-6	43.08	RanBP, RRM1, C2H2 zinc finger protein n=2 Tax=Ecto...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 532..552
None	No IPR available	COILS	Coil	Coil	coord: 475..495
None	No IPR available	COILS	Coil	Coil	coord: 720..754
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 679..712
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..71
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 72..157
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 614..643
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..201
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..36
None	No IPR available	PANTHER	PTHR13948:SF3	FI21118P1	coord: 110..825
None	No IPR available	PANTHER	PTHR13948	RNA-BINDING PROTEIN	coord: 110..825
IPR041591	OCRE domain	PFAM	PF17780	OCRE	coord: 567..595 e-value: 4.1E-7 score: 30.0
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 113..277 e-value: 7.4E-11 score: 44.2
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 331..472 e-value: 5.4E-5 score: 25.2
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS01358	ZF_RANBP2_1	coord: 286..305
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS50199	ZF_RANBP2_2	coord: 282..311 score: 9.043563
IPR013087	Zinc finger C2H2-type	PROSITE	PS50157	ZINC_FINGER_C2H2_2	coord: 792..822 score: 10.408493
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 202..427

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_118	contig	Contig_118:113970..119121 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|352388	mRNA_13233	Tribonema minus UTEX_B_3156	mRNA	Contig_118 113890..119121 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|352388|estExt_Genemark1.C_Ctg_1180011 ID=Trimin1|352388|estExt_Genemark1.C_Ctg_1180011|Name=jgi.p|Trimin1|352388|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=830bp
MVDKRVKDSSRDGRDREKERERDSKSSRRRSRSREKGGSSSAAAGDRRHS
AASGSRSHRSRSRSKDRSRKRSSSRGRGDSRGKERSTKRARSRSKDRSGG
ARSKSPAKSRSAKDSSGKDSSAKDADRKSGGSSKGAGEKESSRDKERGSD
SRRSARSRSRSRSAGNSSSSRRRERDADGGSGHGGAGAGARRGSIGQDES
APSTTVAILGLAAGVTERMLTRALERFRPIAVRVPSGGRGAAFADFASAA
DAQDAVRARLEVGGAPARAEFARSGAHGGGGRDRAWECGKCAVLNFADRA
VCYCCRGTRDGGECAGLNFADRTVCYRCPGTRDGGEVGSRGGRSRDALAA
LESSAATNVLLLRGLSLATTAEQVHRIRDFVPVITEKLRVYAPIAAVRVL
HDPRTRAPCGAAAVEFATREHASHTLSTAASAHPPLAIAGIEPALAYARV
AKAGSARSSSGGDGGSGGALTAAAVEAAAAALMEADARSKELEKLRGTLG
EVRAGPGGVVPAIFAAAMAAAAAARAAPAADDAAAEEELAAAVAKAKAKK
EEQTYSWPPSFEAAGAAYVLDPASAYFYEAASGAYYDPKSRLYFINEAWY
THVPGGAPPFVLASGGDDAAGGGGDASSEPNGGRELAAAQAPAAAAPTPA
ASAVALKRKTKLSFGLKAVAAAGGVAKRRGSGDGDSSSDSDDSAGAGEGG
GGSERADAGETLAAARAAAAQEAERQRAAKAAQLSAAEAKVEAALREANA
LLAKQQHAKHAAAEAAAAARRSSGDVLPEAAAAAAAAAGVGFACLLCARG
FATAEQLQKHERKSKLHADNLAKREAGLL*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR041591	OCRE
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR001876	Znf_RanBP2
IPR013087	Znf_C2H2_type
IPR035979	RBD_domain_sf