Trimin1|352367|estExt_Genemark1.C_Ctg_1160072 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|352367
Unique NameTrimin1|352367|estExt_Genemark1.C_Ctg_1160072
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length120
Homology
BLAST of jgi.p|Trimin1|352367 vs. uniprot
Match: A0A835ZFT2_9STRA (Transcription elongation factor 1 homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFT2_9STRA)

HSP 1 Score: 194 bits (493), Expect = 3.840e-62
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0
Query:    1 MGRRKSSTKKISNKKRPTLDTSFKCPFCCHDKVVQCTMNFKDNVGTLQCRRCDTKYSTVINYLSEPIDIFTEWIDAAEAEHAANQELDREXXXXXXXXXXXXXXXXXXXXXXDGEDSDI 119
            MGRRKSSTKKISNKKRPTLDTSFKCPFCCHDKVVQCTMNFKDNVGTLQCRRCDTKYSTVINYLSEPIDIFTEWIDAAEAEHAANQELDREXXXXXXXXXXXXXXXXXXXXXXDGEDSDI
Sbjct:    1 MGRRKSSTKKISNKKRPTLDTSFKCPFCCHDKVVQCTMNFKDNVGTLQCRRCDTKYSTVINYLSEPIDIFTEWIDAAEAEHAANQELDREXXXXXXXXXXXXXXXXXXXXXXDGEDSDI 119          
BLAST of jgi.p|Trimin1|352367 vs. uniprot
Match: D7FVV5_ECTSI (Transcription elongation factor 1 homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVV5_ECTSI)

HSP 1 Score: 112 bits (279), Expect = 9.580e-30
Identity = 52/84 (61.90%), Postives = 60/84 (71.43%), Query Frame = 0
Query:    1 MGRRKSSTKKISNKKRPTLDTSFKCPFCCHDKVVQCTMNFKDNVGTLQCRRCDTKYSTVINYLSEPIDIFTEWIDAAEAEHAAN 84
            MGRRK STKKI  KK  TLD  FKCPFC HDKVV+CTMN K+    L CR CD  Y   INYL+EPID++T+WID  EA +A +
Sbjct:    1 MGRRKKSTKKIVVKKNTTLDKVFKCPFCNHDKVVECTMNKKEKTARLLCRMCDVNYEMTINYLTEPIDVYTDWIDECEAVNAVD 84          
BLAST of jgi.p|Trimin1|352367 vs. uniprot
Match: A0A485LI04_9STRA (Transcription elongation factor 1 homolog n=6 Tax=Saprolegniaceae TaxID=4764 RepID=A0A485LI04_9STRA)

HSP 1 Score: 103 bits (257), Expect = 1.160e-26
Identity = 49/83 (59.04%), Postives = 57/83 (68.67%), Query Frame = 0
Query:    1 MGRRKSSTKKISNKKRPTLDTSFKCPFCCHDKVVQCTMNFKDNVGTLQCRRCDTKYSTVINYLSEPIDIFTEWIDAAEAEHAA 83
            MGRRK+STKKI  +K+  +   FKCPFC HD  VQC M+   NVG L CR C   Y T INYLSEPID++T+WID  EA H A
Sbjct:    1 MGRRKTSTKKIVTRKKQVVARVFKCPFCSHDDSVQCKMDRDRNVGHLSCRVCSESYQTNINYLSEPIDVYTDWIDECEALHTA 83          
BLAST of jgi.p|Trimin1|352367 vs. uniprot
Match: A0A024U4B4_9STRA (Transcription elongation factor 1 homolog n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A024U4B4_9STRA)

HSP 1 Score: 100 bits (249), Expect = 1.900e-25
Identity = 47/82 (57.32%), Postives = 57/82 (69.51%), Query Frame = 0
Query:    1 MGRRKSSTKKISNKKRPTLDTSFKCPFCCHDKVVQCTMNFKDNVGTLQCRRCDTKYSTVINYLSEPIDIFTEWIDAAEAEHA 82
            MGRRK+STKKI  +K+  +   FKCPFC HD  VQC M+   NVG L CR C   Y + INYLSEPID++T+WID  EA H+
Sbjct:    1 MGRRKTSTKKIVTRKKQVVARVFKCPFCSHDDSVQCKMDRDRNVGHLTCRICSESYQSNINYLSEPIDVYTDWIDECEALHS 82          
BLAST of jgi.p|Trimin1|352367 vs. uniprot
Match: A0A8J2WXL7_9STRA (Transcription elongation factor 1 homolog n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WXL7_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 4.310e-24
Identity = 42/80 (52.50%), Postives = 56/80 (70.00%), Query Frame = 0
Query:    1 MGRRKSSTKKISNKKRPTLDTSFKCPFCCHDKVVQCTMNFKDNVGTLQCRRCDTKYSTVINYLSEPIDIFTEWIDAAEAE 80
            MGRR++   K+  KK+PT+ T FKCPFC ++K V   M++    GTL+CR C   Y+  INYLSEP+D+F+EWID  EAE
Sbjct:    1 MGRRRAKATKVVKKKQPTMQTEFKCPFCNYEKCVAAKMDYDKETGTLECRVCAATYTATINYLSEPVDVFSEWIDQCEAE 80          
BLAST of jgi.p|Trimin1|352367 vs. uniprot
Match: F0YA60_AURAN (Transcription elongation factor 1 homolog (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YA60_AURAN)

HSP 1 Score: 96.7 bits (239), Expect = 5.310e-24
Identity = 40/78 (51.28%), Postives = 56/78 (71.79%), Query Frame = 0
Query:    1 MGRRKSSTKKISNKKRPTLDTSFKCPFCCHDKVVQCTMNFKDNVGTLQCRRCDTKYSTVINYLSEPIDIFTEWIDAAE 78
            MGRR++  +K+  KK+P + T FKCPFC H+  V+C ++++   G+L+CR C   YS  +NYLSEPIDIF+EWID  E
Sbjct:    1 MGRRRAKAQKVVKKKKPVMLTEFKCPFCNHEGAVECKIDYEKESGSLECRVCGASYSATVNYLSEPIDIFSEWIDHCE 78          
BLAST of jgi.p|Trimin1|352367 vs. uniprot
Match: A0A2P6V099_9CHLO (Transcription elongation factor 1 homolog n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V099_9CHLO)

HSP 1 Score: 96.7 bits (239), Expect = 6.100e-24
Identity = 45/83 (54.22%), Postives = 61/83 (73.49%), Query Frame = 0
Query:    1 MGRRKSSTKKISNKKRPTLDTSFKCPFCCHDKVVQCTMNFKDNVGTLQCRRCDTKYSTVINYLSEPIDIFTEWIDAAEAEHAA 83
            MG+RKSS K    K+RP L+T+F CPFC  DK V C M+ + NVG ++C +C   +ST I+ LSEPID+++EWIDA EAE+A+
Sbjct:    1 MGKRKSSAKAPPKKQRPKLETTFACPFCNADKSVGCEMDREKNVGAVRCTQCKAAWSTKIHQLSEPIDVYSEWIDACEAENAS 83          
BLAST of jgi.p|Trimin1|352367 vs. uniprot
Match: A0A2P6TL08_CHLSO (Transcription elongation factor 1 homolog n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TL08_CHLSO)

HSP 1 Score: 92.4 bits (228), Expect = 2.850e-22
Identity = 42/83 (50.60%), Postives = 59/83 (71.08%), Query Frame = 0
Query:    1 MGRRKSSTKKISNKKRPTLDTSFKCPFCCHDKVVQCTMNFKDNVGTLQCRRCDTKYSTVINYLSEPIDIFTEWIDAAEAEHAA 83
            MG+RKSS K    K RP L+T+F CPFC  DK V C ++ + NVG ++C +C   ++T I+ LSEPID+++EWIDA E E+A+
Sbjct:    1 MGKRKSSAKPPPKKARPKLETTFACPFCNADKSVSCELDRETNVGAVKCSQCKAAWTTKIHQLSEPIDVYSEWIDACEEENAS 83          
BLAST of jgi.p|Trimin1|352367 vs. uniprot
Match: A0A0D2KVK8_9CHLO (Transcription elongation factor 1 homolog n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2KVK8_9CHLO)

HSP 1 Score: 92.0 bits (227), Expect = 3.940e-22
Identity = 42/82 (51.22%), Postives = 57/82 (69.51%), Query Frame = 0
Query:    1 MGRRKSSTKKISNKKRPTLDTSFKCPFCCHDKVVQCTMNFKDNVGTLQCRRCDTKYSTVINYLSEPIDIFTEWIDAAEAEHA 82
            MG+RKSS K       P LDTSF CPFC   K VQCTM+++   GT++C  C   +S+ IN+LSEPIDI+++W+DA E+ +A
Sbjct:    1 MGKRKSSAKPPPKAPAPKLDTSFNCPFCNSTKTVQCTMDWERQEGTVECVHCKESFSSKINHLSEPIDIYSDWLDACESANA 82          
BLAST of jgi.p|Trimin1|352367 vs. uniprot
Match: A0A7S2G0L4_9STRA (Transcription elongation factor 1 homolog (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G0L4_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 7.950e-22
Identity = 41/81 (50.62%), Postives = 60/81 (74.07%), Query Frame = 0
Query:    1 MGRRKSSTKKISNKKRPTLDTSFKCPFCCHDKVVQCTMNFKDNVGTLQCRRCDTKYSTVINYLSEPIDIFTEWIDAAEAEH 81
            MGRRK++ KK+  KKRPT+  +FKC FC H+  V+C +N ++ +G L+CR C   + T I+YLSE +D+F+EWID+ EAE+
Sbjct:   29 MGRRKTAMKKLK-KKRPTVAQTFKCLFCNHEDAVECELNHREKIGKLKCRICGADWETRIHYLSEAVDVFSEWIDSTEAEN 108          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352367 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZFT2_9STRA3.840e-62100.00Transcription elongation factor 1 homolog n=1 Tax=... [more]
D7FVV5_ECTSI9.580e-3061.90Transcription elongation factor 1 homolog n=2 Tax=... [more]
A0A485LI04_9STRA1.160e-2659.04Transcription elongation factor 1 homolog n=6 Tax=... [more]
A0A024U4B4_9STRA1.900e-2557.32Transcription elongation factor 1 homolog n=3 Tax=... [more]
A0A8J2WXL7_9STRA4.310e-2452.50Transcription elongation factor 1 homolog n=1 Tax=... [more]
F0YA60_AURAN5.310e-2451.28Transcription elongation factor 1 homolog (Fragmen... [more]
A0A2P6V099_9CHLO6.100e-2454.22Transcription elongation factor 1 homolog n=1 Tax=... [more]
A0A2P6TL08_CHLSO2.850e-2250.60Transcription elongation factor 1 homolog n=1 Tax=... [more]
A0A0D2KVK8_9CHLO3.940e-2251.22Transcription elongation factor 1 homolog n=1 Tax=... [more]
A0A7S2G0L4_9STRA7.950e-2250.62Transcription elongation factor 1 homolog (Fragmen... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007808Transcription elongation factor 1PFAMPF05129Elf1coord: 2..78
e-value: 2.2E-26
score: 91.7
IPR007808Transcription elongation factor 1PANTHERPTHR20934UNCHARACTERIZEDcoord: 1..100
IPR038567Transcription elongation factor 1 superfamilyGENE3D2.20.25.190coord: 15..81
e-value: 9.8E-24
score: 85.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 81..119
NoneNo IPR availableSUPERFAMILY57783Zinc beta-ribboncoord: 1..79

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_116contigContig_116:431880..433276 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352367mRNA_11314Tribonema minus UTEX_B_3156 mRNAContig_116 431880..433429 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|352367|estExt_Genemark1.C_Ctg_1160072 ID=Trimin1|352367|estExt_Genemark1.C_Ctg_1160072|Name=jgi.p|Trimin1|352367|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=120bp
MGRRKSSTKKISNKKRPTLDTSFKCPFCCHDKVVQCTMNFKDNVGTLQCR
RCDTKYSTVINYLSEPIDIFTEWIDAAEAEHAANQELDREDEEGEGGEGG
GSSRAAAAAAASDGEDSDI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007808Elf1
IPR038567T_Elf1_sf