Trimin1|352280|estExt_Genemark1.C_Ctg_1140020 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|352280
Unique NameTrimin1|352280|estExt_Genemark1.C_Ctg_1140020
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length727
Homology
BLAST of jgi.p|Trimin1|352280 vs. uniprot
Match: A0A835ZBW6_9STRA (Noc2p family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBW6_9STRA)

HSP 1 Score: 935 bits (2416), Expect = 0.000e+0
Identity = 726/726 (100.00%), Postives = 726/726 (100.00%), Query Frame = 0
Query:    1 MGKPASKRTKKFQKKGGLGGIQKNLDKKKQVKAIKRKQAVRAQTREEKASEAEXXXXXXXXXXXXXXXXXSQAPPLPAAVDLDEFMECRSLYAAVEVGGSGAEEYSVEIDFAGLEEALGARQRKKKRAKPGAPAADAAAAELTVEGVDKLLARVAADSGGAXXXXAAPLTWLAHAFRAAVLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFAAQLLPQADAAAAADGGDGEAAAAGVRAASRSAFLQRHAKMPRSEAWPRLAGALRAFLEAAPHALLSAAGAATAEVXXXXXXXXXXXXXLMIPFPELARAALRSAADXXXXXXXXXXXXXXXXXXXXXALSQPLPLFHTALRAAYRAYRLAVERLDGSSGXXXXXXXXXATMAALRTGVAELYRHEPAASQLHAFVFLHTMAATVEAAEEGGKAGEAATVEVRSWPFLQCVLLWTRVVAAGCSSGGGXXXXXXXXXXXXXXAPMXXXXXXXXXXXXXXXXXXPGAPSLPHRLALARAAQDLAAAAGVFLPAAWMAMGALEVDSLYAVRSAAXXXXXXXXXXXXXXXXXFALAAVARLSRDELRDAAAQRALLAEAAALLAREAALYAQSPAHPDYAGRCARALTAAAAXXXXXXXXXXXADVAAAMRAAAEAIERRARDVERARSRLSTHPANVTALEALRPIDGAPAAARLALLDARAGGGXXXXXXXXKKQKGKAGAPPARALRQ 726
            MGKPASKRTKKFQKKGGLGGIQKNLDKKKQVKAIKRKQAVRAQTREEKASEAEXXXXXXXXXXXXXXXXXSQAPPLPAAVDLDEFMECRSLYAAVEVGGSGAEEYSVEIDFAGLEEALGARQRKKKRAKPGAPAADAAAAELTVEGVDKLLARVAADSGGAXXXXAAPLTWLAHAFRAAVLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFAAQLLPQADAAAAADGGDGEAAAAGVRAASRSAFLQRHAKMPRSEAWPRLAGALRAFLEAAPHALLSAAGAATAEVXXXXXXXXXXXXXLMIPFPELARAALRSAADXXXXXXXXXXXXXXXXXXXXXALSQPLPLFHTALRAAYRAYRLAVERLDGSSGXXXXXXXXXATMAALRTGVAELYRHEPAASQLHAFVFLHTMAATVEAAEEGGKAGEAATVEVRSWPFLQCVLLWTRVVAAGCSSGGGXXXXXXXXXXXXXXAPMXXXXXXXXXXXXXXXXXXPGAPSLPHRLALARAAQDLAAAAGVFLPAAWMAMGALEVDSLYAVRSAAXXXXXXXXXXXXXXXXXFALAAVARLSRDELRDAAAQRALLAEAAALLAREAALYAQSPAHPDYAGRCARALTAAAAXXXXXXXXXXXADVAAAMRAAAEAIERRARDVERARSRLSTHPANVTALEALRPIDGAPAAARLALLDARAGGGXXXXXXXXKKQKGKAGAPPARALRQ
Sbjct:    1 MGKPASKRTKKFQKKGGLGGIQKNLDKKKQVKAIKRKQAVRAQTREEKASEAEXXXXXXXXXXXXXXXXXSQAPPLPAAVDLDEFMECRSLYAAVEVGGSGAEEYSVEIDFAGLEEALGARQRKKKRAKPGAPAADAAAAELTVEGVDKLLARVAADSGGAXXXXAAPLTWLAHAFRAAVLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFAAQLLPQADAAAAADGGDGEAAAAGVRAASRSAFLQRHAKMPRSEAWPRLAGALRAFLEAAPHALLSAAGAATAEVXXXXXXXXXXXXXLMIPFPELARAALRSAADXXXXXXXXXXXXXXXXXXXXXALSQPLPLFHTALRAAYRAYRLAVERLDGSSGXXXXXXXXXATMAALRTGVAELYRHEPAASQLHAFVFLHTMAATVEAAEEGGKAGEAATVEVRSWPFLQCVLLWTRVVAAGCSSGGGXXXXXXXXXXXXXXAPMXXXXXXXXXXXXXXXXXXPGAPSLPHRLALARAAQDLAAAAGVFLPAAWMAMGALEVDSLYAVRSAAXXXXXXXXXXXXXXXXXFALAAVARLSRDELRDAAAQRALLAEAAALLAREAALYAQSPAHPDYAGRCARALTAAAAXXXXXXXXXXXADVAAAMRAAAEAIERRARDVERARSRLSTHPANVTALEALRPIDGAPAAARLALLDARAGGGXXXXXXXXKKQKGKAGAPPARALRQ 726          
BLAST of jgi.p|Trimin1|352280 vs. uniprot
Match: A0A6H5KR85_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR85_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 1.090e-22
Identity = 117/407 (28.75%), Postives = 158/407 (38.82%), Query Frame = 0
Query:  259 KMPRSEAWPRLAGALRAFL-------------------EAAPHALLSAAGAATAEVXXXXXXXXXXXXXLMIPFPELARAALRSAADXXXXXXXXXXXXXXXXXXXXXALSQPLPLFHTALRAAYRAYRLAVERLDGSSGXXXXXXXXXA--TMAALRTGVAELYRHEPAASQLHAFVFLHTMA-----ATVEAAEEGGKAGEA--ATVEVRSWPFLQCVLLWTRVVAAGCSSGGGXXXXXXXXXXXXXXAPMXXXXXXXXXXXXXXXXXXPGAPSLPHRLALARAAQDLAAAAGVFLPAAWMAMGALEVDSLYAVRSAAXXXXXXXXXXXXXXXXX------------------------FALAAVARLSRDELRDAAAQRALLAEAAALLAREAALYAQSPAHPD 613
            K+ ++EAWPRL GAL +FL                   E    +    + AAT+               L+ PFP LAR  L                          + SQP+P  H A + +YR YR A ER+ G  G         A  ++  LR  +AEL+  E  ++ LHA+V++H +A     A  E  + GG A EA  A   +RSW FLQ + LWT VV A  +                    +                  PG    P  LALAR+AQDLAAAAGVFLP +   +G LE+      R  A                                           L+A+A L +++LR A  + A+  EAA L+AREA  Y  S   P+
Sbjct:  220 KLEKAEAWPRLGGALLSFLTSALDCVETEWATSISVAVEGCADSSKQGSSAATSASLEDGLDRMRNHVPLLFPFPRLARRYLSFLLAVLQTSDSTAALSLAFVRLYELSTSQPMPFLHDAFKGSYRCYRAAAERIGGGRGARVMARGEGAGSSLPLLRECLAELFGVEKPSAYLHAYVYIHELAREAVGAAAEVKKGGGMAREAGPALRRLRSWGFLQSLQLWTSVVTAHPAKSS-----------------LGPLVPPLAKALEITFQLSPGLYGAPRTLALARSAQDLAAAAGVFLPTSHYLVGLLELLHAREARPGATAPSAGGPADGEEAGPGGLTVASGXXXXXXXXXXXXXXXAALDLSAMAGLGKEDLRVAEVRAAVSREAAGLIAREAVCYRWSAGMPE 609          
BLAST of jgi.p|Trimin1|352280 vs. uniprot
Match: D8LEQ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEQ5_ECTSI)

HSP 1 Score: 114 bits (285), Expect = 1.300e-22
Identity = 130/407 (31.94%), Postives = 174/407 (42.75%), Query Frame = 0
Query:  259 KMPRSEAWPRLAGALRAFLEAAPHALLS-------------------AAGAATAEVXXXXXXXXXXXXXLMIPFPELARAALRSAADXXXXXXXXXXXXXXXXXXXXXALSQPLPLFHTALRAAYRAYRLAVERLDGSSGXXXXXXXXXA--TMAALRTGVAELYRHEPAASQLHAFVFLHTMAA-TVEAAEE----GGKAGEA--ATVEVRSWPFLQCVLLWTRVVAAGCSSGGGXXXXXXXXXXXXXXAPMXXXXXXXXXXXXXXXXXXPGAPSLPHRLALARAAQDLAAAAGVFLPAAWMAMGALEVDSLYAVRSAAXXXXXXXXXXXXXXXXXFA------------------------LAAVARLSRDELRDAAAQRALLAEAAALLAREAALYAQSPAHPD 613
            K+ ++EAWPRL GAL +FL +A  ++ +                    +  AT+               L+ PFP LAR  L    D                     + SQP+P  H A + +YR YR A ER+ G  G         A  ++  LR   AEL+  E  ++ LHA+V++H +A   VEAA E    GGKA +A  A   +RSW FLQ + LWT VV A  +                    +                  PG    P  LALAR+AQDLAAAAGVFLP +   +G LE+      R  +     XXXXXXXXXXXX                          L+A+A L +++LR    + A+  EAA L+AREA  Y  S   P+
Sbjct:  224 KLEKAEAWPRLGGALLSFLTSALDSVETEWATSNSVAVEGRADSSKQGSSGATSASLVDGLDRMRNHVPLLFPFPRLARRYLAFLLDVLQTSDNTAALSLAFVRLYELSTSQPMPFLHDAFKGSYRCYRAAAERIGGGRGAGVMAKGDGAGSSLPLLREWFAELFGVEKPSAYLHAYVYIHDLAREAVEAAAEVKKGGGKARDAGPALRRLRSWGFLQSLQLWTSVVTAHPAKSS-----------------LGPLVPPLAKALEITFQLSPGLYGAPRTLALARSAQDLAAAAGVFLPTSHHLVGLLELLHAREARPGSTASSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALDLSAMAGLGKEDLRVVEVRAAVSREAAGLVAREAVCYRWSAGMPE 613          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352280 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835ZBW6_9STRA0.000e+0100.00Noc2p family-domain-containing protein n=1 Tax=Tri... [more]
A0A6H5KR85_9PHAE1.090e-2228.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LEQ5_ECTSI1.300e-2231.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 642..662
NoneNo IPR availableCOILSCoilCoilcoord: 721..726
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 696..726
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..60
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 39..53
NoneNo IPR availablePANTHERPTHR12687:SF4NUCLEOLAR COMPLEX PROTEIN 2 HOMOLOGcoord: 166..679
IPR005343Nucleolar complex protein 2PFAMPF03715Noc2coord: 391..678
e-value: 1.8E-26
score: 93.1
IPR005343Nucleolar complex protein 2PANTHERPTHR12687NUCLEOLAR COMPLEX 2 AND RAD4-RELATEDcoord: 166..679

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_114contigContig_114:150907..153087 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352280mRNA_15055Tribonema minus UTEX_B_3156 mRNAContig_114 150907..153137 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|352280|estExt_Genemark1.C_Ctg_1140020 ID=Trimin1|352280|estExt_Genemark1.C_Ctg_1140020|Name=jgi.p|Trimin1|352280|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=727bp
MGKPASKRTKKFQKKGGLGGIQKNLDKKKQVKAIKRKQAVRAQTREEKAS
EAERTSAAAGAAAAAQRGAASQAPPLPAAVDLDEFMECRSLYAAVEVGGS
GAEEYSVEIDFAGLEEALGARQRKKKRAKPGAPAADAAAAELTVEGVDKL
LARVAADSGGAAAAAAAPLTWLAHAFRAAVLGGDAAAADALPAALRGARG
SAAAAHLIGACLDALPAAFAAQLLPQADAAAAADGGDGEAAAAGVRAASR
SAFLQRHAKMPRSEAWPRLAGALRAFLEAAPHALLSAAGAATAEVAAKAE
AAARAAAPLMIPFPELARAALRSAADALAAARSAAAAARAAAVLRAVALS
QPLPLFHTALRAAYRAYRLAVERLDGSSGSGGGGAAAVATMAALRTGVAE
LYRHEPAASQLHAFVFLHTMAATVEAAEEGGKAGEAATVEVRSWPFLQCV
LLWTRVVAAGCSSGGGGGGTGGGGGGSGSEAPMAPLVAPLAQIIERAARV
APGAPSLPHRLALARAAQDLAAAAGVFLPAAWMAMGALEVDSLYAVRSAA
AAAAAPNGSGGSGGGGGFALAAVARLSRDELRDAAAQRALLAEAAALLAR
EAALYAQSPAHPDYAGRCARALTAAAARLTGGGGGGGRADVAAAMRAAAE
AIERRARDVERARSRLSTHPANVTALEALRPIDGAPAAARLALLDARAGG
GSGGGSGGQKKQKGKAGAPPARALRQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005343Noc2