Trimin1|351656|estExt_Genemark1.C_Ctg_960014 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|351656
Unique Name	Trimin1\|351656\|estExt_Genemark1.C_Ctg_960014
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	925

Homology

[Close]

BLAST of jgi.p|Trimin1|351656 vs. uniprot
Match: A0A835YGS5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGS5_9STRA)

HSP 1 Score: 1142 bits (2953), Expect = 0.000e+0
Identity = 924/924 (100.00%), Postives = 924/924 (100.00%), Query Frame = 0

Query:    1 MDAEVVTVEEALAHAAPTDVIITTSERVCADRAMDPAAVLTPALVAQLYGLQLYGLQSVVDVQDPLRPALCPLGPRAMPHGICSDGNCPGDDDDGEPGGGXXXXXXXXXXXXXXXXXGAWPRLMPERHLHVHMGLGPVSMGAVLPLLGLGTAPWSLVQPLTGACAPFAESARRRCXXXXXXXXXAHWTTLAAHALRNGTPLLPPLLLYTCARDAAAHVAAAEXXXXXXXXXPACCAERVAXXXXXXXXADDPTGLANHLALSRFTSISVVLGACELMSVATLRQLIARYAXXXXXXXXXXXXXXLISYXXXXXXXXXXXXXXXXXTQHVPPRRDPRRPSQHGSDACVPLLVMQSYVEPRAEDVADELNNDPELXXXXXXXXXXXXXXXXXEMIKDGRMXXXXXXXXXXXXXXXXXXXXXAARVTAIPCILDMLCVSWSMDRHRQVIDGVSEHKIGSIVVLLPRKQVLALWAPLPFEVNVVMPEAAHFLRRRIELLLHGTRAVMVTRXXXXXXXXXXXXXXXXXTQFTVSDALLGLSAGTERCCSLAFLSIVAQCATAADLYFGGGGSGALALLSAXXXXXXXXXXXXXXXXXXXAQQLAARIGDGXXXXXXXXXXXXXXAQLDSSPRLWQYATSPPPRIVSETXXXXXXXXXXXXXPRSMLPHAPSADCDPPSRHDVFAAXXXXXXXXXXXIASTRDSALRVLGGAAPFVDRAWHLHVLPVLQCVLAPAFAGLPAAXXXXXXXXXXXXXXXXXXXXXXXXXXVPLLASGVQAGLPAAAVADVESQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPXXXXXXXXXXXXXXXXXXXXXXXXSVDDVLLQARFLAFMRRDAAEVRSSVVALGTSDGGVASITTPGSMAAVKAAAAAAGRGIAHSGGGAGGIT 924
            MDAEVVTVEEALAHAAPTDVIITTSERVCADRAMDPAAVLTPALVAQLYGLQLYGLQSVVDVQDPLRPALCPLGPRAMPHGICSDGNCPGDDDDGEPGGGXXXXXXXXXXXXXXXXXGAWPRLMPERHLHVHMGLGPVSMGAVLPLLGLGTAPWSLVQPLTGACAPFAESARRRCXXXXXXXXXAHWTTLAAHALRNGTPLLPPLLLYTCARDAAAHVAAAEXXXXXXXXXPACCAERVAXXXXXXXXADDPTGLANHLALSRFTSISVVLGACELMSVATLRQLIARYAXXXXXXXXXXXXXXLISYXXXXXXXXXXXXXXXXXTQHVPPRRDPRRPSQHGSDACVPLLVMQSYVEPRAEDVADELNNDPELXXXXXXXXXXXXXXXXXEMIKDGRMXXXXXXXXXXXXXXXXXXXXXAARVTAIPCILDMLCVSWSMDRHRQVIDGVSEHKIGSIVVLLPRKQVLALWAPLPFEVNVVMPEAAHFLRRRIELLLHGTRAVMVTRXXXXXXXXXXXXXXXXXTQFTVSDALLGLSAGTERCCSLAFLSIVAQCATAADLYFGGGGSGALALLSAXXXXXXXXXXXXXXXXXXXAQQLAARIGDGXXXXXXXXXXXXXXAQLDSSPRLWQYATSPPPRIVSETXXXXXXXXXXXXXPRSMLPHAPSADCDPPSRHDVFAAXXXXXXXXXXXIASTRDSALRVLGGAAPFVDRAWHLHVLPVLQCVLAPAFAGLPAAXXXXXXXXXXXXXXXXXXXXXXXXXXVPLLASGVQAGLPAAAVADVESQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPXXXXXXXXXXXXXXXXXXXXXXXXSVDDVLLQARFLAFMRRDAAEVRSSVVALGTSDGGVASITTPGSMAAVKAAAAAAGRGIAHSGGGAGGIT
Sbjct:    1 MDAEVVTVEEALAHAAPTDVIITTSERVCADRAMDPAAVLTPALVAQLYGLQLYGLQSVVDVQDPLRPALCPLGPRAMPHGICSDGNCPGDDDDGEPGGGXXXXXXXXXXXXXXXXXGAWPRLMPERHLHVHMGLGPVSMGAVLPLLGLGTAPWSLVQPLTGACAPFAESARRRCXXXXXXXXXAHWTTLAAHALRNGTPLLPPLLLYTCARDAAAHVAAAEXXXXXXXXXPACCAERVAXXXXXXXXADDPTGLANHLALSRFTSISVVLGACELMSVATLRQLIARYAXXXXXXXXXXXXXXLISYXXXXXXXXXXXXXXXXXTQHVPPRRDPRRPSQHGSDACVPLLVMQSYVEPRAEDVADELNNDPELXXXXXXXXXXXXXXXXXEMIKDGRMXXXXXXXXXXXXXXXXXXXXXAARVTAIPCILDMLCVSWSMDRHRQVIDGVSEHKIGSIVVLLPRKQVLALWAPLPFEVNVVMPEAAHFLRRRIELLLHGTRAVMVTRXXXXXXXXXXXXXXXXXTQFTVSDALLGLSAGTERCCSLAFLSIVAQCATAADLYFGGGGSGALALLSAXXXXXXXXXXXXXXXXXXXAQQLAARIGDGXXXXXXXXXXXXXXAQLDSSPRLWQYATSPPPRIVSETXXXXXXXXXXXXXPRSMLPHAPSADCDPPSRHDVFAAXXXXXXXXXXXIASTRDSALRVLGGAAPFVDRAWHLHVLPVLQCVLAPAFAGLPAAXXXXXXXXXXXXXXXXXXXXXXXXXXVPLLASGVQAGLPAAAVADVESQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPXXXXXXXXXXXXXXXXXXXXXXXXSVDDVLLQARFLAFMRRDAAEVRSSVVALGTSDGGVASITTPGSMAAVKAAAAAAGRGIAHSGGGAGGIT 924

[Close]

BLAST of jgi.p|Trimin1|351656 vs. uniprot
Match: A0A835Z6S4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6S4_9STRA)

HSP 1 Score: 207 bits (526), Expect = 1.220e-51
Identity = 195/515 (37.86%), Postives = 247/515 (47.96%), Query Frame = 0

Query:    1 MDAEVVTVEEALAHAAPTDVIITTSERVCADRAMD--PAAVLTPALVAQLYGLQLYGL---QSVVDVQDPLRPALCPLGPRAMPHGICSDGNCPGDDDDGEPGGGXXXXXXXXXXXXXXXXXGAWPRLMPERHL-HVHMGLGPVSMGAVLPLLGLGTAPWSLVQPLTGACAPFAESARRRCXXXXXXXXXAHWTTLAAHALRNGTPLLPPLLLYTCARDAAAHVAAAEXXXXXXXXXPACCAERVAXXXXXXXXADDPTGLANHLALSRFTSISVVLGACELMSVATLRQLIARYAXXXXXXXXXXXXXXLISYXXXXXXXXXXXXXXXXXTQHVPPRRDPRRPSQHGSDACVPLLVMQSYVEPRAEDVADELNNDPELXXXXXXXXXXXXXXXXXEMIKDGRMXXXXXXXXXXXXXXXXXXXXXAARVTAIPCILDMLCVSWSMDRHRQVIDGVSEHKIGSIVVLLPRKQVLALWAPLPFEVNVVMPE---AAHFLRRRIELLLHGTRAVMVTR 506
            +DAEV T+ +A+A A+P D++IT S R+      D  PAA+LTPA VAQLYGL        QSVVDV +PL  A  P GPR +P                  GG               XXXG+   +   R L H H+GLGP+S+GAV+P LGL    + LVQP    C  F E+ R RC            T  A H LRNG PLLPP+LLYTC  +A   VA                A  V          DD         LSR TS+SV +GA E+++ A  ++LI ++          XXXXX    XXXXXXXXXXXXXXXXX     P                PL V+QS + P +EDVA  +N D EL                                              + R+ A+P I+DM+C +W MD HRQV++ V+E  +G I++L PR+ + AL  P+PFE NV++PE    AHFLR R E LL+ TRAVM  R
Sbjct:  159 IDAEVTTLPDAMACASPRDIVITASTRLSRHLNADARPAAILTPAQVAQLYGLXXXXXXXXQSVVDVHEPLHIATVPQGPRMLPSA----------------GGAYTPPPTGAGARSPGXXXGS--DVPAARQLVHAHIGLGPISVGAVIPSLGLAGMSFVLVQPPVAECLNFLEAVRSRCATCTLS------TVHAVHFLRNGAPLLPPVLLYTCTDNAIQMVAQGLADEA---------AFGVGQRLIFVLSEDD---FLLERVLSRATSLSVAIGAGEVLAPAQFKELICKHVPPRGAAEGGXXXXXXXXXXXXXXXXXXXXXXXXXXAPGPRP----------------PLFVLQSTIAPSSEDVAARINADAEL----------------------------------------------SQRIHAVPAIVDMICATWVMDTHRQVMNAVTEDAVGQIIMLQPRESIEALPVPVPFEANVILPEDAEVAHFLRLRTERLLYATRAVMAAR 575

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|351656 vs. uniprot

BLAST of jgi.p|Trimin1|351656 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A835YGS5_9STRA	0.000e+0	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A835Z6S4_9STRA	1.220e-51	37.86	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 89..103
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 84..123
None	No IPR available	PANTHER	PTHR45725	FORMIN HOMOLOGY 2 FAMILY MEMBER	coord: 203..913

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_96	contig	Contig_96:111046..124856 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|351656	mRNA_13043	Tribonema minus UTEX_B_3156	mRNA	Contig_96 110542..124856 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|351656|estExt_Genemark1.C_Ctg_960014 ID=Trimin1|351656|estExt_Genemark1.C_Ctg_960014|Name=jgi.p|Trimin1|351656|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=925bp
MDAEVVTVEEALAHAAPTDVIITTSERVCADRAMDPAAVLTPALVAQLYG
LQLYGLQSVVDVQDPLRPALCPLGPRAMPHGICSDGNCPGDDDDGEPGGG
DGDEGGGDGDGGGSGGGGAWPRLMPERHLHVHMGLGPVSMGAVLPLLGLG
TAPWSLVQPLTGACAPFAESARRRCGGGSSGGGGAHWTTLAAHALRNGTP
LLPPLLLYTCARDAAAHVAAAEAAAEAAAEAPACCAERVAATEAATCCAD
DPTGLANHLALSRFTSISVVLGACELMSVATLRQLIARYALGAGELMPVA
TLRQLISYALAAGELMPVATLRQLVTQHVPPRRDPRRPSQHGSDACVPLL
VMQSYVEPRAEDVADELNNDPELYVEPRAEDVADELNNDLEMIKDGRMQS
YTEQRAEDITDELKNDPELAARVTAIPCILDMLCVSWSMDRHRQVIDGVS
EHKIGSIVVLLPRKQVLALWAPLPFEVNVVMPEAAHFLRRRIELLLHGTR
AVMVTRFLRRRIELLLHGTRAVMTQFTVSDALLGLSAGTERCCSLAFLSI
VAQCATAADLYFGGGGSGALALLSATAGDLYFGGGGGGALALLSAQQLAA
RIGDGGGGGGGGGGAAAAAAQLDSSPRLWQYATSPPPRIVSETLWQYAAS
TLPRAAPRSMLPHAPSADCDPPSRHDVFAALWQYAAAAPPRIASTRDSAL
RVLGGAAPFVDRAWHLHVLPVLQCVLAPAFAGLPAAAAAAEAAGAAAASA
ALLPAAAAAAAAVPLLASGVQAGLPAAAVADVESQGGAAAASAGPAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAPAATAAAAAEAEAAAAAYPAT
AAAASVDDVLLQARFLAFMRRDAAEVRSSVVALGTSDGGVASITTPGSMA
AVKAAAAAAGRGIAHSGGGAGGIT*