Trimin1|351585|estExt_Genemark1.C_Ctg_940035 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|351585
Unique NameTrimin1|351585|estExt_Genemark1.C_Ctg_940035
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length370
Homology
BLAST of jgi.p|Trimin1|351585 vs. uniprot
Match: A0A836C813_9STRA (Poly(A)-specific ribonuclease n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C813_9STRA)

HSP 1 Score: 741 bits (1912), Expect = 3.680e-270
Identity = 369/369 (100.00%), Postives = 369/369 (100.00%), Query Frame = 0
Query:    1 MDPVPHQQTERGRLDGDSRYKGPDGKLVEIRNVWADNLEEEMAKIREVVEKYPYIAMDTEFPGVVARPLGDVSQSDYQYQTLRCNVDLLKIIQLGLSFANEKGEFAEGCCCWQFNFKFSLDEDMYAQDSIDLLKQSGLEFRDHCARGIDVIDFGELLIASGLVLVDNVTWISFHSGYDFGYLLGKVLTSSALPGQEKDFFTLLKMYFPRLYDIKYLMANQDGFHGGLNKLGDDLAVERIGQKHQAGSDSLLTAQVFFKIVDTKFNGMSNLSREKYNLELFGYGNNNTVYRPALQQQPAATAAMMTPNKPATSYTVSSNSNGTANVGTAFASNGLITMSVASGGGGGYGAPLPDGILLPPAPGQESDERY 369
            MDPVPHQQTERGRLDGDSRYKGPDGKLVEIRNVWADNLEEEMAKIREVVEKYPYIAMDTEFPGVVARPLGDVSQSDYQYQTLRCNVDLLKIIQLGLSFANEKGEFAEGCCCWQFNFKFSLDEDMYAQDSIDLLKQSGLEFRDHCARGIDVIDFGELLIASGLVLVDNVTWISFHSGYDFGYLLGKVLTSSALPGQEKDFFTLLKMYFPRLYDIKYLMANQDGFHGGLNKLGDDLAVERIGQKHQAGSDSLLTAQVFFKIVDTKFNGMSNLSREKYNLELFGYGNNNTVYRPALQQQPAATAAMMTPNKPATSYTVSSNSNGTANVGTAFASNGLITMSVASGGGGGYGAPLPDGILLPPAPGQESDERY
Sbjct:    1 MDPVPHQQTERGRLDGDSRYKGPDGKLVEIRNVWADNLEEEMAKIREVVEKYPYIAMDTEFPGVVARPLGDVSQSDYQYQTLRCNVDLLKIIQLGLSFANEKGEFAEGCCCWQFNFKFSLDEDMYAQDSIDLLKQSGLEFRDHCARGIDVIDFGELLIASGLVLVDNVTWISFHSGYDFGYLLGKVLTSSALPGQEKDFFTLLKMYFPRLYDIKYLMANQDGFHGGLNKLGDDLAVERIGQKHQAGSDSLLTAQVFFKIVDTKFNGMSNLSREKYNLELFGYGNNNTVYRPALQQQPAATAAMMTPNKPATSYTVSSNSNGTANVGTAFASNGLITMSVASGGGGGYGAPLPDGILLPPAPGQESDERY 369          
BLAST of jgi.p|Trimin1|351585 vs. uniprot
Match: A0A835Z498_9STRA (Poly(A)-specific ribonuclease n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z498_9STRA)

HSP 1 Score: 556 bits (1433), Expect = 2.770e-197
Identity = 279/351 (79.49%), Postives = 304/351 (86.61%), Query Frame = 0
Query:   19 RYKGPDGKLVEIRNVWADNLEEEMAKIREVVEKYPYIAMDTEFPGVVARPLGDVSQSDYQYQTLRCNVDLLKIIQLGLSFANEKGEFAEGCCCWQFNFKFSLDEDMYAQDSIDLLKQSGLEFRDHCARGIDVIDFGELLIASGLVLVDNVTWISFHSGYDFGYLLGKVLTSSALPGQEKDFFTLLKMYFPRLYDIKYLMANQDGFHGGLNKLGDDLAVERIGQKHQAGSDSLLTAQVFFKIVDTKFNGMSNLSREKYNLELFGYGNNNTVYRPALQQQPAATAAMMTPNKPATSYTVSSNSNGTANVGTAFASNGLITMSVASGGGGGYGAPLPDGILLPPAPGQESDERY 369
            RY GPDGK +EIRNVW DNLEEEMAKIREVVE YPY+AMDTEFPGVVARP+GD  QSDYQYQTLRCNVDLLKIIQLGLSFANEKGEFAEGCCCWQFNFKFSL EDMYAQDSIDLLKQSG+ F  H ARGIDV++FGELL+ SGLVLVDNVTW+SFHSGYDFGYLL KVLTS ALPGQEK+FF LLK+YFPRLYDIKYLMA+QDGFHGGLNKLGDDL+VERIGQKHQAGSDSLLTAQVFFKIV+TKFNGMSNLSREKYN ELFGYGNNNTVYRP             TP K A SYT+++NSNG AN+  AFA+NG+++MS  +G G    APLPD ILLPP P +E ++ Y
Sbjct:   23 RYTGPDGKYLEIRNVWVDNLEEEMAKIREVVETYPYVAMDTEFPGVVARPIGDFGQSDYQYQTLRCNVDLLKIIQLGLSFANEKGEFAEGCCCWQFNFKFSLGEDMYAQDSIDLLKQSGINFDQHEARGIDVLEFGELLMTSGLVLVDNVTWVSFHSGYDFGYLL-KVLTSCALPGQEKEFFHLLKLYFPRLYDIKYLMASQDGFHGGLNKLGDDLSVERIGQKHQAGSDSLLTAQVFFKIVETKFNGMSNLSREKYNSELFGYGNNNTVYRPGQN-------VTSTPTKAAVSYTITANSNGAANLSAAFAANGVVSMS--NGAGAYANAPLPDDILLPPVPIEEGEDAY 363          
BLAST of jgi.p|Trimin1|351585 vs. uniprot
Match: A0A6H5JI77_9PHAE (Poly(A)-specific ribonuclease n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI77_9PHAE)

HSP 1 Score: 404 bits (1038), Expect = 1.670e-135
Identity = 197/286 (68.88%), Postives = 235/286 (82.17%), Query Frame = 0
Query:   12 GRLDGDSRYKGPDGKLVEIRNVWADNLEEEMAKIREVVEKYPYIAMDTEFPGVVARPLGDVSQSDYQYQTLRCNVDLLKIIQLGLSFANEKGEFAE-GCCCWQFNFKFSLDEDMYAQDSIDLLKQSGLEFRDHCARGIDVIDFGELLIASGLVLVDNVTWISFHSGYDFGYLLGKVLTSSALPGQEKDFFTLLKMYFPRLYDIKYLMANQDGFHGGLNKLGDDLAVERIGQKHQAGSDSLLTAQVFFKIVDTKFNGMSNL----SREKYNLELFGYGNNNT-VYRP 291
            G  +   +++ PDG+LVEIRNVWADNLE EM  IRE+V+ YPY+AMDTEFPGVVARP+GD +Q D+QYQTLRCNVD+LK+IQLGLSFANEKGE  E GCC WQFNF F+L EDMYA DSI+LLK SG++F+ H  RGID+ DFGELL+ SGLVL+ NVTW+SFHSGYDFGYL+ K+LT S LP QE DFF LL++YFP++YDIKYL+++QDGFHGGLNKL DDL VERIG  HQAGSDSLLT QVF K+ D  FNG++NL    SR K+  +L+GYG N T +YRP
Sbjct:   42 GVAEASEKHRAPDGRLVEIRNVWADNLETEMVIIRELVQDYPYVAMDTEFPGVVARPVGDFNQPDFQYQTLRCNVDMLKMIQLGLSFANEKGELPEDGCCTWQFNFAFNLSEDMYAHDSIELLKNSGIDFQGHERRGIDLQDFGELLMTSGLVLLPNVTWLSFHSGYDFGYLI-KLLTCSNLPTQESDFFDLLQLYFPKIYDIKYLVSSQDGFHGGLNKLADDLKVERIGPMHQAGSDSLLTEQVFLKVADVYFNGVANLDLGKSRGKFAGQLYGYGGNQTGIYRP 326          
BLAST of jgi.p|Trimin1|351585 vs. uniprot
Match: D8LIU5_ECTSI (Poly(A)-specific ribonuclease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIU5_ECTSI)

HSP 1 Score: 399 bits (1025), Expect = 1.500e-134
Identity = 194/274 (70.80%), Postives = 228/274 (83.21%), Query Frame = 0
Query:   19 RYKGPDGKLVEIRNVWADNLEEEMAKIREVVEKYPYIAMDTEFPGVVARPLGDVSQSDYQYQTLRCNVDLLKIIQLGLSFANEKGEFAE-GCCCWQFNFKFSLDEDMYAQDSIDLLKQSGLEFRDHCARGIDVIDFGELLIASGLVLVDNVTWISFHSGYDFGYLLGKVLTSSALPGQEKDFFTLLKMYFPRLYDIKYLMANQDGFHGGLNKLGDDLAVERIGQKHQAGSDSLLTAQVFFKIVDTKFNGMSNL----SREKYNLELFGYGNNNT 287
            +++ PDG+LVEIRNVWADNLE EM  IRE+VE YPY+AMDTEFPGVVARP+GD +Q D+QYQTLRCNVD+LK+IQLGLSFANEKGE  E GCC WQFNF F+L EDMYA DSI LLK SG++F+ H  RGID+ DFGELL+ SGLVL+ NVTW+SFHSGYDFGYL+ K+LT S LP QE DFF LL++YFP++YDIKYL+++QDGFHGGLNKL DDL VERIG  HQAGSDSLLT QVF K+ D  FNG++NL    SR K+  +L+GYG N T
Sbjct:   46 KHRAPDGRLVEIRNVWADNLETEMVIIRELVEDYPYVAMDTEFPGVVARPVGDFNQPDFQYQTLRCNVDMLKMIQLGLSFANEKGELPEDGCCTWQFNFAFNLSEDMYAHDSIQLLKNSGIDFQGHERRGIDLQDFGELLMTSGLVLLPNVTWLSFHSGYDFGYLI-KLLTCSNLPTQESDFFDLLQLYFPKIYDIKYLVSSQDGFHGGLNKLADDLKVERIGPMHQAGSDSLLTEQVFLKVADVYFNGVANLDQGKSRGKFAGQLYGYGGNQT 318          
BLAST of jgi.p|Trimin1|351585 vs. uniprot
Match: A0A7S2V6J5_9STRA (Poly(A)-specific ribonuclease (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6J5_9STRA)

HSP 1 Score: 382 bits (980), Expect = 1.880e-129
Identity = 187/273 (68.50%), Postives = 219/273 (80.22%), Query Frame = 0
Query:   20 YKGPDGKLVEIRNVWADNLEEEMAKIREVVEKYPYIAMDTEFPGVVARPLGDVSQSDYQYQTLRCNVDLLKIIQLGLSFANEKGEFAEGCCCWQFNFKFSLDEDMYAQDSIDLLKQSGLEFRDHCARGIDVIDFGELLIASGLVLVDNVTWISFHSGYDFGYLLGKVLTSSALPGQEKDFFTLLKMYFPRLYDIKYLMANQDGFHGGLNKLGDDLAVERIGQKHQAGSDSLLTAQVFFKIVDTKFN-GMSNLSREKYNLELFGYGNNNTVYRP 291
            Y  P+GK VEIR+VWA NLE+EMA IRE+V +YP+IAMDTEFPGVVARP  D + SDY YQTLRCNVDLLKIIQLG++FA++ GE AEGC CWQFNFKF+L EDMYAQDSIDLLK SG+EF  H   GIDV  FGELLI SGLVL+DNV WISFHSGYDFGYLL K+LT  ALP +E  FF LL++YFP +YDIKYLM   DG HGGLNKL +D+ VERIG  HQAGSDSLLTAQ FF++++ +F+  +S     K+  EL+G G N+TVY+P
Sbjct:    1 YTAPNGKSVEIRDVWASNLEQEMACIRELVPRYPFIAMDTEFPGVVARPASDYNSSDYMYQTLRCNVDLLKIIQLGIAFADKNGEIAEGCACWQFNFKFNLSEDMYAQDSIDLLKASGIEFTRHEKYGIDVHHFGELLITSGLVLMDNVKWISFHSGYDFGYLL-KILTCQALPAEEAHFFELLRLYFPCIYDIKYLMTICDGIHGGLNKLAEDIKVERIGPMHQAGSDSLLTAQAFFRLIELRFSVPISEWDDSKFRGELYGLGGNHTVYKP 272          
BLAST of jgi.p|Trimin1|351585 vs. uniprot
Match: W7TF71_9STRA (Poly(A)-specific ribonuclease n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TF71_9STRA)

HSP 1 Score: 371 bits (952), Expect = 3.550e-124
Identity = 179/275 (65.09%), Postives = 217/275 (78.91%), Query Frame = 0
Query:   20 YKGPDGKLVEIRNVWADNLEEEMAKIREVVEKYPYIAMDTEFPGVVARPLGDVSQSDYQYQTLRCNVDLLKIIQLGLSFANEKGEFAEGCCCWQFNFKFSLDEDMYAQDSIDLLKQSGLEFRDHCARGIDVIDFGELLIASGLVLVDNVTWISFHSGYDFGYLLGKVLTSSALPGQEKDFFTLLKMYFPRLYDIKYLMANQDGFHGGLNKLGDDLAVERIGQKHQAGSDSLLTAQVFFKIVDTKFNGMSNLSREKYNLELFGYGNNNTVYRPALQ 294
            Y G DGK +EIR VW +NL++EM  +REVVE+YPY+AMDTEFPGVVARP+GDVS SDYQY+TL+CNVDLLKIIQLGLSFA+  G     C  WQFNF+FSL +D+YA+DSI+LLKQSG++F  H + GIDV  FGELL+ SGLVL+D V WISFHSGYDFGYLL KVLT +ALP  E  FF LL+ YFP  YDIKYLM    G HGGL ++ ++L+V R+G  HQAGSDSLLTAQ FF++    F+G++NLS EK+  ELFG G+N+TVYR  +Q
Sbjct:   25 YTGQDGKRMEIREVWLENLDKEMVAVREVVEQYPYVAMDTEFPGVVARPVGDVSASDYQYKTLKCNVDLLKIIQLGLSFADSDGNSPPECPTWQFNFRFSLSDDIYAEDSIELLKQSGIDFSKHESHGIDVFRFGELLMTSGLVLMDEVRWISFHSGYDFGYLL-KVLTCAALPSDENGFFDLLRTYFPCFYDIKYLMTACQGLHGGLQRIAEELSVARVGPMHQAGSDSLLTAQTFFRLCAVSFDGLNNLSDEKFKGELFGLGHNHTVYRSKMQ 298          
BLAST of jgi.p|Trimin1|351585 vs. uniprot
Match: K8YSH1_NANGC (Poly(A)-specific ribonuclease n=2 Tax=Monodopsidaceae TaxID=425072 RepID=K8YSH1_NANGC)

HSP 1 Score: 371 bits (952), Expect = 4.930e-122
Identity = 179/275 (65.09%), Postives = 217/275 (78.91%), Query Frame = 0
Query:   20 YKGPDGKLVEIRNVWADNLEEEMAKIREVVEKYPYIAMDTEFPGVVARPLGDVSQSDYQYQTLRCNVDLLKIIQLGLSFANEKGEFAEGCCCWQFNFKFSLDEDMYAQDSIDLLKQSGLEFRDHCARGIDVIDFGELLIASGLVLVDNVTWISFHSGYDFGYLLGKVLTSSALPGQEKDFFTLLKMYFPRLYDIKYLMANQDGFHGGLNKLGDDLAVERIGQKHQAGSDSLLTAQVFFKIVDTKFNGMSNLSREKYNLELFGYGNNNTVYRPALQ 294
            Y G DGK +EIR VW +NL++EM  +REVVE+YPY+AMDTEFPGVVARP+GDVS SDYQY+TL+CNVDLLKIIQLGLSFA+  G     C  WQFNF+FSL +D+YA+DSI+LLKQSG++F  H + GIDV  FGELL+ SGLVL+D V WISFHSGYDFGYLL KVLT +ALP  E  FF LL+ YFP  YDIKYLM    G HGGL ++ ++L+V R+G  HQAGSDSLLTAQ FF++    F+G++NLS EK+  ELFG G+N+TVYR  +Q
Sbjct:  178 YTGQDGKRMEIREVWLENLDKEMVAVREVVEQYPYVAMDTEFPGVVARPVGDVSASDYQYKTLKCNVDLLKIIQLGLSFADSDGNSPPECPTWQFNFRFSLSDDIYAEDSIELLKQSGIDFSKHESHGIDVFRFGELLMTSGLVLMDEVRWISFHSGYDFGYLL-KVLTCAALPSDENGFFDLLRTYFPCFYDIKYLMTACQGLHGGLQRIAEELSVARVGPMHQAGSDSLLTAQTFFRLCAVSFDGLNNLSDEKFKGELFGLGHNHTVYRSKMQ 451          
BLAST of jgi.p|Trimin1|351585 vs. uniprot
Match: A0A7S2SP02_9STRA (Poly(A)-specific ribonuclease n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SP02_9STRA)

HSP 1 Score: 360 bits (925), Expect = 2.460e-120
Identity = 176/282 (62.41%), Postives = 222/282 (78.72%), Query Frame = 0
Query:   11 RGRLDGDSRYKGPDGKLVEIRNVWADNLEEEMAKIREVVEKYPYIAMDTEFPGVVARPLGDVSQSDYQYQTLRCNVDLLKIIQLGLSFANEKGEFAEGCCCWQFNFKFSLDEDMYAQDSIDLLKQSGLEFRDHCARGIDVIDFGELLIASGLVLVDNVTWISFHSGYDFGYLLGKVLTSSALPGQEKDFFTLLKMYFPRLYDIKYLMANQDGFHGGLNKLGDDLAVERIGQKHQAGSDSLLTAQVFFKIVDTKFNGMSNLSRE-KYNLELFGYGNNNTVYRP 291
            R +  G   + GP+GK+VEIR+VW  NL+EEMA IR++V  YP++AMDTEFPGVVARP+ D    DYQYQTLRCNVDLLKIIQLG++F+NEKGE   GC  WQFNFKF+++EDMYAQDSIDLL ++G++F  H   GIDV+ FGEL+I SGLVLVD+V WISFHSGYDFGYLL K+LT SALPG E++FF +LK+YFP  +DIKY++ + +  HGGL K+ DDL  +RIG  HQAGSDSL+TA  FF++ + +F G S++ ++ K+  ELFG G N TVYRP
Sbjct:   45 RSKNKGSGVFPGPNGKMVEIRDVWGHNLDEEMANIRKIVVDYPFVAMDTEFPGVVARPITDQYAHDYQYQTLRCNVDLLKIIQLGIAFSNEKGEHPPGCVSWQFNFKFNIEEDMYAQDSIDLLMEAGIDFDRHEEEGIDVMYFGELMITSGLVLVDSVRWISFHSGYDFGYLL-KLLTCSALPGGEQEFFEVLKIYFPYYFDIKYMVHSTE-LHGGLQKIADDLNCQRIGPMHQAGSDSLITAATFFRLSEERFGGPSSVEKDHKFVNELFGLGGNCTVYRP 324          
BLAST of jgi.p|Trimin1|351585 vs. uniprot
Match: A0A7S2F743_9STRA (Poly(A)-specific ribonuclease n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F743_9STRA)

HSP 1 Score: 353 bits (907), Expect = 5.440e-118
Identity = 177/290 (61.03%), Postives = 212/290 (73.10%), Query Frame = 0
Query:    3 PVPHQQTERGRLDGD-SRYKGPDGKLVEIRNVWADNLEEEMAKIREVVEKYPYIAMDTEFPGVVARPLGDVSQSDYQYQTLRCNVDLLKIIQLGLSFANEKGEFAEGCCCWQFNFKFSLDEDMYAQDSIDLLKQSGLEFRDHCARGIDVIDFGELLIASGLVLVDNVTWISFHSGYDFGYLLGKVLTSSALPGQEKDFFTLLKMYFPRLYDIKYLMANQDGFHGGLNKLGDDLAVERIGQKHQAGSDSLLTAQVFFKIVDTKFNGMSNLSREKYNLELFGYGNNNTVYRP 291
            P P    E+    G  S + GP+GKLVEIR+VW  NL+ EMA +R+ VE YPYIAMDTEFPGVVARP+ D   +DYQYQTLRCNVDLLKIIQLG++  NEKG+  + C  WQFNFKF+L EDMYAQDSIDLLK++G++F+ H   GIDV  FGEL+  SGLVLV+NV WISFHSGYDFGYLL K+LT  ALP  E +FF LLK YFP LYDIK+++   +  HGGL K+ DDL  +RIG  HQAGSD+LLTA  +FK+     +  +    +KY  ELFG G N TVYRP
Sbjct:    8 PPPSASMEQRNTKGSGSIFPGPNGKLVEIRDVWRSNLDSEMALVRKCVEDYPYIAMDTEFPGVVARPITDQYANDYQYQTLRCNVDLLKIIQLGIALVNEKGDHPDDCVAWQFNFKFNLQEDMYAQDSIDLLKEAGIDFKRHETEGIDVNYFGELMTTSGLVLVENVRWISFHSGYDFGYLL-KLLTCVALPSNESEFFELLKFYFPYLYDIKFMINGMNDLHGGLQKIADDLHAQRIGPMHQAGSDALLTADTYFKLCARLESDSAQDYDQKYENELFGLGGNCTVYRP 296          
BLAST of jgi.p|Trimin1|351585 vs. uniprot
Match: A0A7S1YCK0_9STRA (Poly(A)-specific ribonuclease n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1YCK0_9STRA)

HSP 1 Score: 351 bits (901), Expect = 8.120e-117
Identity = 170/272 (62.50%), Postives = 210/272 (77.21%), Query Frame = 0
Query:   25 GKLVEIRNVWADNLEEEMAKIREVVEKYPYIAMDTEFPGVVARPLGDVSQSDYQYQTLRCNVDLLKIIQLGLSFANEKGEFAEGCCCWQFNFKFSLDEDMYAQDSIDLLKQSGLEFRDHCARGIDVIDFGELLIASGLVLVDNVTWISFHSGYDFGYLLGKVLTSSALPGQEKDFFTLLKMYFPRLYDIKYLMANQDGFHGGLNKLGDDLAVERIGQKHQAGSDSLLTAQVFFKIVDTKF----NGMSNLSREKYNLELFGYGNNNTVYRPA 292
            G+ +EIRNVWA+N+EEEM  IRE++EKYPY+AMDTEFPGVVARP+ +   +DY Y++L+CNVDLLKIIQLGLSFA+ +G FA  C CWQFNFKFSL +DM+AQDSIDLL  SG+ F DH  RGID + FGELL+ SGLVL D V W+SFHSGYD+GYLL K+LT+  LP  EK+FF  L++YFP +YDIKY+ +  DG  GGL KL DDL  +R+G +HQAGSDSLLT   +F +   KF    NG+S +S  KY  ELFGYG+N+TV + A
Sbjct:   59 GEKLEIRNVWAENVEEEMYHIRELIEKYPYVAMDTEFPGVVARPVSETFTTDYHYKSLKCNVDLLKIIQLGLSFADAEGNFAPQCPCWQFNFKFSLQDDMFAQDSIDLLVNSGISFEDHATRGIDPLLFGELLMVSGLVLDDRVKWVSFHSGYDYGYLL-KLLTTKDLPADEKNFFENLRIYFPTIYDIKYMTSLVDGHFGGLQKLADDLGCQRLGAEHQAGSDSLLTMSTYFALAKKKFTVSSNGISRISDHKYKNELFGYGSNHTVRKSA 329          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351585 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C813_9STRA3.680e-270100.00Poly(A)-specific ribonuclease n=1 Tax=Tribonema mi... [more]
A0A835Z498_9STRA2.770e-19779.49Poly(A)-specific ribonuclease n=1 Tax=Tribonema mi... [more]
A0A6H5JI77_9PHAE1.670e-13568.88Poly(A)-specific ribonuclease n=1 Tax=Ectocarpus s... [more]
D8LIU5_ECTSI1.500e-13470.80Poly(A)-specific ribonuclease n=1 Tax=Ectocarpus s... [more]
A0A7S2V6J5_9STRA1.880e-12968.50Poly(A)-specific ribonuclease (Fragment) n=1 Tax=F... [more]
W7TF71_9STRA3.550e-12465.09Poly(A)-specific ribonuclease n=1 Tax=Nannochlorop... [more]
K8YSH1_NANGC4.930e-12265.09Poly(A)-specific ribonuclease n=2 Tax=Monodopsidac... [more]
A0A7S2SP02_9STRA2.460e-12062.41Poly(A)-specific ribonuclease n=1 Tax=Rhizochromul... [more]
A0A7S2F743_9STRA5.440e-11861.03Poly(A)-specific ribonuclease n=1 Tax=Dictyocha sp... [more]
A0A7S1YCK0_9STRA8.120e-11762.50Poly(A)-specific ribonuclease n=1 Tax=Grammatophor... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 20..286
e-value: 8.9E-90
score: 302.5
IPR006941Ribonuclease CAF1PFAMPF04857CAF1coord: 33..148
e-value: 2.2E-10
score: 40.4
NoneNo IPR availablePANTHERPTHR10797:SF0POP2, ISOFORM Ecoord: 17..290
IPR039637CCR4-NOT transcription complex subunit 7/8/Pop2PANTHERPTHR10797CCR4-NOT TRANSCRIPTION COMPLEX SUBUNITcoord: 17..290
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 30..268

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_94contigContig_94:177374..181707 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351585mRNA_7948Tribonema minus UTEX_B_3156 mRNAContig_94 177190..181707 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|351585|estExt_Genemark1.C_Ctg_940035 ID=Trimin1|351585|estExt_Genemark1.C_Ctg_940035|Name=jgi.p|Trimin1|351585|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=370bp
MDPVPHQQTERGRLDGDSRYKGPDGKLVEIRNVWADNLEEEMAKIREVVE
KYPYIAMDTEFPGVVARPLGDVSQSDYQYQTLRCNVDLLKIIQLGLSFAN
EKGEFAEGCCCWQFNFKFSLDEDMYAQDSIDLLKQSGLEFRDHCARGIDV
IDFGELLIASGLVLVDNVTWISFHSGYDFGYLLGKVLTSSALPGQEKDFF
TLLKMYFPRLYDIKYLMANQDGFHGGLNKLGDDLAVERIGQKHQAGSDSL
LTAQVFFKIVDTKFNGMSNLSREKYNLELFGYGNNNTVYRPALQQQPAAT
AAMMTPNKPATSYTVSSNSNGTANVGTAFASNGLITMSVASGGGGGYGAP
LPDGILLPPAPGQESDERY*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036397RNaseH_sf
IPR006941RNase_CAF1
IPR039637CNOT7/CNOT8/Pop2
IPR012337RNaseH-like_sf