Trimin1|351515|estExt_Genemark1.C_Ctg_920047 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|351515
Unique NameTrimin1|351515|estExt_Genemark1.C_Ctg_920047
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length328
Homology
BLAST of jgi.p|Trimin1|351515 vs. uniprot
Match: A0A836C876_9STRA (Scd6-like Sm domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C876_9STRA)

HSP 1 Score: 629 bits (1622), Expect = 2.240e-227
Identity = 327/327 (100.00%), Postives = 327/327 (100.00%), Query Frame = 0
Query:    1 MSSQQLIGSRISLISKKDIRYEGILYGIDVENSSVTLQDVKSWGTENRVEGPQVPASDEIFGCIVFRGQDIKDLHVHDTPAEAPKPAQPMVAPPPGALGPPPVPAQEQQQRADTGKLEGGGKPAKYQPPHKKPNFKPKGEGGKRGGDSAPPGPSGPHAIPGKTVGTGDHLMARPNRGGGGIAVESEEFDFQAALSQFDKDAERTEIYGVGTAADAAGGLDGGEALALXXXXXXXPKKYNKSSFFDEISCDALDGRHRVPGFTERKLNTETFGATGVNTGNRQDRVLNLVIKEQHLLARYQGRGRGGYRGGYRSYNQRSGSGTQGTST 327
            MSSQQLIGSRISLISKKDIRYEGILYGIDVENSSVTLQDVKSWGTENRVEGPQVPASDEIFGCIVFRGQDIKDLHVHDTPAEAPKPAQPMVAPPPGALGPPPVPAQEQQQRADTGKLEGGGKPAKYQPPHKKPNFKPKGEGGKRGGDSAPPGPSGPHAIPGKTVGTGDHLMARPNRGGGGIAVESEEFDFQAALSQFDKDAERTEIYGVGTAADAAGGLDGGEALALXXXXXXXPKKYNKSSFFDEISCDALDGRHRVPGFTERKLNTETFGATGVNTGNRQDRVLNLVIKEQHLLARYQGRGRGGYRGGYRSYNQRSGSGTQGTST
Sbjct:    1 MSSQQLIGSRISLISKKDIRYEGILYGIDVENSSVTLQDVKSWGTENRVEGPQVPASDEIFGCIVFRGQDIKDLHVHDTPAEAPKPAQPMVAPPPGALGPPPVPAQEQQQRADTGKLEGGGKPAKYQPPHKKPNFKPKGEGGKRGGDSAPPGPSGPHAIPGKTVGTGDHLMARPNRGGGGIAVESEEFDFQAALSQFDKDAERTEIYGVGTAADAAGGLDGGEALALXXXXXXXPKKYNKSSFFDEISCDALDGRHRVPGFTERKLNTETFGATGVNTGNRQDRVLNLVIKEQHLLARYQGRGRGGYRGGYRSYNQRSGSGTQGTST 327          
BLAST of jgi.p|Trimin1|351515 vs. uniprot
Match: D7FK17_ECTSI (Novel Sm-like protein with long N-and C-terminal domains n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK17_ECTSI)

HSP 1 Score: 163 bits (413), Expect = 2.790e-44
Identity = 132/327 (40.37%), Postives = 162/327 (49.54%), Query Frame = 0
Query:    3 SQQLIGSRISLISKKDIRYEGILYGIDVENSSVTLQDVKSWGTENRVEGPQ-VPASDEIFGCIVFRGQDIKDLHVHDTP-AEAPKPAQPM----------------VAPPPGALGPPPVPAQEQQQRADTGKLEG------------GGKPAKYQPPHKKPNFKPKGEGGKRGGDSAPP----GPSGPH--------AIPGKTVGTGDHLM-ARPNRGGGGIAVESEEFDFQAALSQFDKDAERTEIYGVGTAADAAGGLDGGEALALXXXXXXXPKKYNKSSFFDEISCDALDGRHRVPGFT--ERKLNTETFGATGV--NTGNRQ 282
            S  L+GSRISLIS+KDIR+EGIL  +D EN+SVTLQ+VKSWGTE R+EG Q +P SD +  C+ FRG+DIKDLHVH+T  A AP PA P+                VAP   A G     A   +  A+ G +E             G KP +YQPPHK PN+KP            PP    GP G          A+PG+    G+HL+  R              FDF+A L++FDK+                                       KSSFFDEISCDALDGR  +PG    ER  NTETFGAT V  + G+R+
Sbjct:    2 SGDLVGSRISLISRKDIRWEGILVQVDRENASVTLQNVKSWGTEGRLEGDQQIPPSDHLHACVNFRGEDIKDLHVHETAEAPAPPPAAPVQXXXXXXXXXXXVATRVAPDVAAGGG----AGGVRAAAENGDVEAEDAPGSSTMRDQGLKPGRYQPPHKNPNWKP------------PPTVQRGPPGXXXXXXXXXXALPGQ----GNHLLNRRTXXXXXXXXXXXXXFDFEAGLAKFDKE---------------------------------------KSSFFDEISCDALDGRGHMPGGRGGERTRNTETFGATSVALSAGSRR 269          
BLAST of jgi.p|Trimin1|351515 vs. uniprot
Match: B7FYW7_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FYW7_PHATC)

HSP 1 Score: 140 bits (354), Expect = 3.830e-36
Identity = 117/311 (37.62%), Postives = 153/311 (49.20%), Query Frame = 0
Query:    1 MSSQQLIGSRISLISKKDIRYEGILYGIDVENSSVTLQDVKSWGTENRVEGPQ----VPASDEIFGCIVFRGQDIKDLHVHDTPAEAPKPAQPMVAPP--PGALGPPPVPAQEQ--QQRADTGKLEGGGK-----PAKYQPPHKKPNFKPKGEGGKRGGDSAPPGPSGPHAIPGKTVGTGDHLMARPNRG----GGGIAVESEEFDFQAALSQFDKDAERTEIYGVGTAADAAGGLDGGEALALXXXXXXXPKKYNKSSFFDEISCDALDGR----HRVPGFTERKLNTETFGATGVNTGNRQDRVLNLVI 290
            M+   LIG  ISLISKK+IRYEG+LY I+ +N++V LQ+V+S+GTE R    Q    V  SD++   ++FRGQDIKDLHVH+  AEA  PA P   P   P    P P P         A T K E   +     P K        N +P+G+ G               A PG    TG  L+ R  RG    G  +    ++FDFQ+ L QF K+ E  +        +AA  LD G            P  Y K  FFD ISCDA+D +    +R+ G  ER LNTETFGA  ++  NR    L+ ++
Sbjct:    1 MAQNPLIGKNISLISKKNIRYEGVLYSINEQNATVALQNVRSFGTEGREATEQWLAFVGPSDDVHPFLMFRGQDIKDLHVHEAGAEAVTPAPPPPEPTSKPAVQAPIPAPTHSXVXXXXAATTKPEAAPQNSATIPQKSMERGHNDNRRPRGKSG---------------AAPG----TGASLLNRKARGVVTEGDAVQPPRDDFDFQSNLEQFKKEDEEAD--------EAAETLDRG------------PSAYAKDDFFDSISCDAIDKQSGVNNRLRGAEERSLNTETFGAVALD--NRSSLKLDAML 270          
BLAST of jgi.p|Trimin1|351515 vs. uniprot
Match: A0A7S2JUH1_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JUH1_9STRA)

HSP 1 Score: 122 bits (306), Expect = 1.620e-28
Identity = 109/312 (34.94%), Postives = 149/312 (47.76%), Query Frame = 0
Query:    1 MSSQQLIGSRISLISKKDIRYEGILYGIDVENSSVTLQDVKSWGTENRVE-----GPQVPASDEIFGCIVFRGQDIKDLHVHDTPAEAPK----PAQPMVAPPPGALGPPPVPAQEQQQRADTGKLEGGGKPAKYQPPHKKPNFKPKGEGGK-------RGGDSAPPGPSGPHAIP--------------GKTVGTGDHLMARPNRG--GGGIAVESEEFDFQAALSQFDKDAERTEIYGVGTAADAAGGLDGGEALALXXXXXXXPKKYNKSSFFDEISCDALD---GRH-RVPGFTERKLNTETFGATGV 276
            M++  L+GSRISLISKKDIRYEG LY I+  +++V LQ+V+S+GTE R +     G  +P    +   ++FRG DIKDLHVH+  ++A K    P+ P +     A  PP V A +Q     T   +    P       K+P+ KP+ +  K           S+  G   P                   + VGTG  L+ R   G   G      E+FD ++A ++FDKDAE  +I G           +  E +            Y K  FFDEISCD  D   G H R+ G  ERK+NTETFGA  +
Sbjct:    1 MANNPLLGSRISLISKKDIRYEGTLYSINETDATVALQNVRSFGTEGREKRDDAAGTFIPPQATVHPYLLFRGMDIKDLHVHEKASDAAKKEDVPSDPAIL---SATAPPEV-ANKQASADSTAAKKKVDTPGNDDVFDKEPDTKPEKKTTKTLTKADSNASXSSAKGQREPSQXXXXXXXXXXXXXXXKNELVGTGASLLNRKVLGTVDGEAPKVGEDFDLESATAKFDKDAEYEQING-----------ENPEPIE---------SSYKKDDFFDEISCDVTDKMNGVHTRLRGAEERKVNTETFGAVSL 288          
BLAST of jgi.p|Trimin1|351515 vs. uniprot
Match: A0A6H5KDD7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDD7_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 1.030e-27
Identity = 78/163 (47.85%), Postives = 95/163 (58.28%), Query Frame = 0
Query:    3 SQQLIGSRISLISKKDIRYEGILYGIDVENSSVTLQDVKSWGTENRVEGPQ-VPASDEIFGCIVFRGQDIKDLHVHDTPAEAPKP----------------------AQPMVAPPPGALGPPPVPAQEQQQRADTGK-----LEGGGKPAKYQPPHKKPNFKP 137
            S  L+GSRISLIS+KDIR+EGIL  +D EN+SVTLQ+VKSWGTE R+EG Q +P SD +  C+ FRG+DIKDLHVH+T AEAP P                        P VA   G  G     A+     A+         + G KP +YQPPHK PN+KP
Sbjct:    2 SGDLVGSRISLISRKDIRWEGILVQVDRENASVTLQNVKSWGTEGRLEGDQQIPPSDHLHACVNFRGEDIKDLHVHET-AEAPTPPPAAXXXXXXXXXXXXXXXXTRVAPDVAAGGGGAGGVRAAAENGDVEAEDSPGSPTMRDQGLKPGRYQPPHKNPNWKP 163          
BLAST of jgi.p|Trimin1|351515 vs. uniprot
Match: A0A1V9Z4Q3_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z4Q3_9STRA)

HSP 1 Score: 116 bits (291), Expect = 3.350e-26
Identity = 112/324 (34.57%), Postives = 142/324 (43.83%), Query Frame = 0
Query:    7 IGSRISLISKKDIRYEGILYGIDVENSSVTLQDVKSWGTENRVEGPQVPASDEIFGCIVFRGQDIKDLHVHDTPAEAPKPAQPM-------------------------------VAPP------PGALG------PPPVPAQEQQQRADTGKLEGGGKPAKYQPPHKKPNFKPKGEGGKRGGDSAPPGPSGPHAIPGKTV-GTGDHLMARPNR--GGGGIAVESE---EFDFQAALSQFDKDAERTEIYGVGTAADAAGGLDGGEALALXXXXXXXPKKYNKSSFFDEISCDALDGRHRVPG----FTERKLNTETFGATGVN 277
            IGSRISLISK DIRYEG+L+ ID   S V LQ+V+S+GTE R     +P SD +     F+  +IKDLHV +  A  P P  PM                                AP       PGA+       P P+P Q+Q   +   +L      A  +P   + N  P           +P  P    A   +T+ G G HL+ R  R  GG     ESE   +FDF   L  F+K+ E  ++            +D  +A+            Y KSSFFD ISCDALD    V G      ERKLNTETFGA G+N
Sbjct:   12 IGSRISLISKTDIRYEGLLFNIDTRQSMVALQNVRSFGTEGR-RPDHIPPSDTVLQYATFKASEIKDLHVCEAAAPMPPPP-PMQYQXXXXXXXXXXXXXXXXXXXXXXXXXXXKAAPASSTLLTPGAMSNAQQAVPKPLPVQQQSPASAVPEL------ANVEPKQVQVNSTP-----------SPRQPIRHEAESHRTIPGMGGHLLKRKERRIGGDTSMTESELAADFDFSVGLHDFNKEQEYNKMS-----------MDNADAVRPVLKG-----SYQKSSFFDTISCDALDRLEGVNGRMRAHEERKLNTETFGAVGLN 300          
BLAST of jgi.p|Trimin1|351515 vs. uniprot
Match: A0A7S2DIJ2_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DIJ2_9STRA)

HSP 1 Score: 118 bits (295), Expect = 4.430e-26
Identity = 124/375 (33.07%), Postives = 159/375 (42.40%), Query Frame = 0
Query:    6 LIGSRISLISKKDIRYEGILYGIDVENSSVTLQDVKSWGTENRVEGPQVPASDEIFGCIVFRGQDIKDLHVHD---TPAEAP-------KPAQPMVAPPPG----------ALGPP---------------------------------------------------------PVPAQE--QQQRADTG---KLEGGGKPAK---YQPPHKKPNFKPKGEGGK---RGGDSAPPGPSGPHAIPGKTVGTGDHLMARPNRG-----GGGIAVE-SEEFDFQAALSQFDKDAERTEIYGVGTAADAAGGLDGGEALALXXXXXXXPKKYNKS-SFFDEISCDALD-GRHRVPGFT---ERKLNTETFGATGVNTGNR 281
            LIGSRISLISKKDIRY G LY I+   ++V LQDV+S+GTE+R     VP +D I+  I FRG DI DLH+HD   T  E P       KP  P   P P           A+ PP                                                         P+ +Q      +A+ G   +LE GG+       +PP+K     P+G  G+   R   S P  P    +  G   GTG  L+ R  +G        ++ E SE+FDF +A   FDK  E  ++   G++  A G                  KKYN S SFFDE+SCDALD G  R    T   E+K N+ETFGA G+    R
Sbjct:   10 LIGSRISLISKKDIRYVGFLYDINTSEATVALQDVRSFGTEHRPVPQFVPPADTIYPFIKFRGSDINDLHIHDSQPTDGEGPLQQLMGGKPQPPQQEPAPALLTGLGGFPTAISPPGVLSTASLAPGPLLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSASFGSFAATVAPITSQTLTHTAKAENGGAAQLEVGGRSGTDSIRRPPNKGRGGAPQGSSGRNAPRMQSSNPKVPGASGSRSGAMPGTGASLLTRKPKGLDKEHRNALSAEMSEDFDFSSAAEDFDKKKEAEKLAARGSSITAEGDSS---------------KKYNPSASFFDELSCDALDRGGKRFDSQTRLDEQKKNSETFGAVGLQDNRR 369          
BLAST of jgi.p|Trimin1|351515 vs. uniprot
Match: A0A662XUA1_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XUA1_9STRA)

HSP 1 Score: 116 bits (290), Expect = 6.130e-26
Identity = 112/342 (32.75%), Postives = 140/342 (40.94%), Query Frame = 0
Query:    7 IGSRISLISKKDIRYEGILYGIDVENSSVTLQDVKSWGTENRVEGPQVPASDEIFGCIVFRGQDIKDLHVHDTPAEAPKPA--QPMVA-------PPPGALGP-----------------PPVPAQEQQQRADTGKLEGGGKPAKYQPP--------------------------------HKKPNFKPKGEGGKRGGDSAPPGPSGPHAIPGKTVGTGDHLMARPNR---------GGGGIAVESEEFDFQAALSQFDKDAERTEIYGVGTAADAAGGLDGGEALALXXXXXXXPKKYNKSSFFDEISCDALDG----RHRVPGFTERKLNTETFGATGVN 277
            IGSRISLISK DIRYEG L+ ID   S V LQ V+S+GTE R     VP S ++     F+  +I+DLHV +     P+PA  QP          PPP   GP                 P  P         + ++     P + QPP                                +  PN +   +GG + G +A    +G   IPG     G HL+ R  R         GG G A  S EF+F   L+ FDK  E +++                               Y KSSFFD ISCDALD     R R+ G  ERKLNTETFGA G+N
Sbjct:   28 IGSRISLISKTDIRYEGFLFNIDTRQSMVALQSVRSFGTEGR-RAEHVPPSPQVLQYATFKASEIQDLHVCEAAPPPPQPAASQPQPQSYAQPSYPPPMPSGPXXXXXXXXXXXXXXXXAPSKPTLLTPGSVSSAQMHQTPSPRQAQPPVAMYSQQPMQPSYDQHQXXXXXXXQSAPRASYNSNPNRR---QGGSQSGQAAN---NGMRTIPGM----GGHLLKRKERRVPGGNAEVGGVGPAAASGEFNFAEGLNDFDKQEEFSKLD--------------------EEVKPETKGSYQKSSFFDTISCDALDRLEGQRSRITGAEERKLNTETFGAVGLN 338          
BLAST of jgi.p|Trimin1|351515 vs. uniprot
Match: A0A1Y1YN51_9FUNG (Uncharacterized protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1YN51_9FUNG)

HSP 1 Score: 115 bits (287), Expect = 1.000e-25
Identity = 122/371 (32.88%), Postives = 166/371 (44.74%), Query Frame = 0
Query:    1 MSSQQLIGSRISLISKKDIRYEGILYGIDVENSSVTLQDVKSWGTENRVEGP--QVPASDEIFGCIVFRGQDIKDLHVHDTPAEAPKPAQPMVAPPPGAL---GPPPVPAQEQQQRADTGK-LEGGGKPAKYQP--PHKKPNFKPKGEGGKRGGDSAPPGPSGPHAIPG--------KTVGTGDHLMARPNRGGGG----------IAVESEEFDFQAALSQFDKDAERTEIYGVGTAADAAGGLDGGEALALXXXXXXXPKKYNKS-SFFDEISCDAL------DGRHRVPGFTERK--------LNTETFGATGVNTGNRQDRVLNLVIKEQHLLARYQGRGRGGY------------RGGYRSYNQRS 318
            MS++  IGS ISLIS+ DIRY GIL+ I+ + S++ L+ V+S+GTE R   P  ++ ASD +F  IVFRG D+KDL+V + P   P P  P V   P  L    PP  P  +     D  +  E GG   + QP  P++   +       ++ G  A   P    +  G        +  G G HL     RG G           I + S +FDF+++ ++FDK     EI             +  E           P  YNKS SFFD ISC+A       DGR R+  F ER+        LN ETFG T V++                  +RY+GRGRGG+            RGGY   N R+
Sbjct:    1 MSAEGFIGSTISLISRSDIRYVGILHSINAQESTIALEKVRSFGTEGRKGNPAEEIAASDHVFEYIVFRGSDVKDLNVCEAP---PAPQPPAVPNDPAILQTTAPPQPPGFQNYGNNDVNRPKETGGSFGQPQPAYPNRAQQY------WQQPGHDASAEPQSKESAGGIEQNGASDRLPGMGGHLTHNNRRGRGNRRHNGRDRNNIPIPSSDFDFESSNAKFDKTELLKEI-------------EDDEVPEQPVEPSTQPF-YNKSTSFFDNISCEAKERMDNNDGRPRL-SFNERRERQHHERQLNLETFGQTSVDS------------------SRYRGRGRGGHXXXXXXXXXRXXRGGYNHNNYRN 329          
BLAST of jgi.p|Trimin1|351515 vs. uniprot
Match: A0A1E7FG51_9STRA (TFG domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FG51_9STRA)

HSP 1 Score: 113 bits (283), Expect = 5.050e-25
Identity = 107/314 (34.08%), Postives = 142/314 (45.22%), Query Frame = 0
Query:    1 MSSQQLIGSRISLISKKDIRYEGILYGIDVENSSVTLQDVKSWGTENRVEGPQVPA----SDEIFGCIVFRGQDIKDLHVHDTPAEAPKPAQPMVAPPPGALGP-PPVPAQEQQQRADTGKLE---GGGKPAKYQP--PHKKPNFKPKGEGGKRGGDSAPPGPSGPHAIPGK---------------TVGTGDHLMARPNRG----GGGIAVESEEFDFQAALSQFDKDAERTEIYGVGTAADAAGGLDGGEALALXXXXXXXPKKYNKSSFFDEISCDALDGR----HRVPGFTERKLNTETFGATGVNTGNR 281
            M+   L+G+RISLISKK+IRYEGILY I+  NS++ LQ+VKS+GTE R E     A     + I   ++FRG DIKDLHVH+   ++   +Q         + P P     E+  + DT   E       P K     P  K   +P G   K    S     +                        VGTG  L+ R  RG    G G      EFD QA L++FDK  +                 + G+ +A           Y K+ FFD ISCDA+D +    +R+ G  ER LNTETFGAT +N+  R
Sbjct:    1 MAQNPLLGNRISLISKKNIRYEGILYSINETNSTLALQNVKSYGTEGRDETDPATAFVAPQEGIHAYLLFRGCDIKDLHVHEQQQDSSDASQETSKSETQPVDPVPTTKLTEKTCKRDTTDKEIQNPSAVPVKSSTSAPATKKESQPAGSTKKERPVSDNTTATXXXXXXXXXXXXXXXXXXRRHPAAVGTGASLLNRKARGTVQGGPGPENPEGEFDIQAKLNEFDK-GDXXXXXXXXXXXXXXXXXEAGDEMAHPESISGSSSHYEKNDFFDSISCDAIDKKSGVDNRLRGKDERNLNTETFGATALNSQRR 313          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351515 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C876_9STRA2.240e-227100.00Scd6-like Sm domain-containing protein n=1 Tax=Tri... [more]
D7FK17_ECTSI2.790e-4440.37Novel Sm-like protein with long N-and C-terminal d... [more]
B7FYW7_PHATC3.830e-3637.62Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A7S2JUH1_9STRA1.620e-2834.94Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A6H5KDD7_9PHAE1.030e-2747.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1V9Z4Q3_9STRA3.350e-2634.57Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A7S2DIJ2_9STRA4.430e-2633.07Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A662XUA1_9STRA6.130e-2632.75Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A1Y1YN51_9FUNG1.000e-2532.88Uncharacterized protein n=1 Tax=Basidiobolus meris... [more]
A0A1E7FG51_9STRA5.050e-2534.08TFG domain-containing protein n=1 Tax=Fragilariops... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025609Lsm14-like, N-terminalSMARTSM01271LSM14_2coord: 1..102
e-value: 5.5E-43
score: 158.8
IPR025609Lsm14-like, N-terminalPFAMPF12701LSM14coord: 5..78
e-value: 4.2E-29
score: 100.4
IPR025609Lsm14-like, N-terminalCDDcd01736LSm14_Ncoord: 4..76
e-value: 4.37681E-35
score: 120.385
IPR019050FDF domainSMARTSM01199FDF_2coord: 182..275
e-value: 2.7E-18
score: 76.8
IPR019050FDF domainPFAMPF09532FDFcoord: 185..273
e-value: 5.2E-6
score: 27.3
NoneNo IPR availableGENE3D2.30.30.100coord: 1..81
e-value: 2.7E-31
score: 109.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 307..327
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 75..180
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 86..102
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 313..327
NoneNo IPR availablePANTHERPTHR13586SCD6 PROTEIN-RELATEDcoord: 107..317
NoneNo IPR availablePANTHERPTHR13586SCD6 PROTEIN-RELATEDcoord: 4..127
NoneNo IPR availablePANTHERPTHR13586:SF0TRAILER HITCH, ISOFORM Hcoord: 107..317
coord: 4..127
IPR025761FFD boxPROSITEPS51513FFDcoord: 236..251
score: 12.905633
IPR025762DFDF domainPROSITEPS51512DFDFcoord: 176..212
score: 9.074968
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 5..80

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_92contigContig_92:496550..502083 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351515mRNA_14617Tribonema minus UTEX_B_3156 mRNAContig_92 496149..502235 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|351515|estExt_Genemark1.C_Ctg_920047 ID=Trimin1|351515|estExt_Genemark1.C_Ctg_920047|Name=jgi.p|Trimin1|351515|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=328bp
MSSQQLIGSRISLISKKDIRYEGILYGIDVENSSVTLQDVKSWGTENRVE
GPQVPASDEIFGCIVFRGQDIKDLHVHDTPAEAPKPAQPMVAPPPGALGP
PPVPAQEQQQRADTGKLEGGGKPAKYQPPHKKPNFKPKGEGGKRGGDSAP
PGPSGPHAIPGKTVGTGDHLMARPNRGGGGIAVESEEFDFQAALSQFDKD
AERTEIYGVGTAADAAGGLDGGEALALAAAPAPAPKKYNKSSFFDEISCD
ALDGRHRVPGFTERKLNTETFGATGVNTGNRQDRVLNLVIKEQHLLARYQ
GRGRGGYRGGYRSYNQRSGSGTQGTST*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR025609Lsm14-like_N
IPR019050FDF_dom
IPR025761FFD_box
IPR025762DFDF
IPR010920LSM_dom_sf