Trimin1|351449|estExt_Genemark1.C_Ctg_900075 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|351449
Unique NameTrimin1|351449|estExt_Genemark1.C_Ctg_900075
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length410
Homology
BLAST of jgi.p|Trimin1|351449 vs. uniprot
Match: A0A835YS62_9STRA (Vacuolar protein sorting-associated protein 26-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS62_9STRA)

HSP 1 Score: 623 bits (1606), Expect = 3.440e-222
Identity = 410/410 (100.00%), Postives = 410/410 (100.00%), Query Frame = 0
Query:    1 MLASHILAFVPPSIIVRSTSRTFLGVTEQIHKAEVALRSCACCGDVTGLDLVHTTYDLPLLSDHCQLAARRGHLGALQWLRGHDCPWDDGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNFEAWFGLQPVATTLLEFDGAAVSAPHAASNHRYCHRRCGYKHAGVAXXXXXXXXXXXXXXXXXERRPSRAPPPGDKKALERVPIFVGSXXXXXXXXXXXRNEVNGAARPVSGAVTVLVAPGKKVDHMGIKVEMIGQIELYYDRGNHYKFSSLVRELDTANSLVGNRQFLFDFSNVDKPYESYSGLNVRLRYFVRVTITRNYGTITKDFEFAVQNVEPEEPVMNPSLKMEVGIEECLHIEFEYDKSKYHLRDVIIGK 410
            MLASHILAFVPPSIIVRSTSRTFLGVTEQIHKAEVALRSCACCGDVTGLDLVHTTYDLPLLSDHCQLAARRGHLGALQWLRGHDCPWDDGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNFEAWFGLQPVATTLLEFDGAAVSAPHAASNHRYCHRRCGYKHAGVAXXXXXXXXXXXXXXXXXERRPSRAPPPGDKKALERVPIFVGSXXXXXXXXXXXRNEVNGAARPVSGAVTVLVAPGKKVDHMGIKVEMIGQIELYYDRGNHYKFSSLVRELDTANSLVGNRQFLFDFSNVDKPYESYSGLNVRLRYFVRVTITRNYGTITKDFEFAVQNVEPEEPVMNPSLKMEVGIEECLHIEFEYDKSKYHLRDVIIGK
Sbjct:    1 MLASHILAFVPPSIIVRSTSRTFLGVTEQIHKAEVALRSCACCGDVTGLDLVHTTYDLPLLSDHCQLAARRGHLGALQWLRGHDCPWDDGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNFEAWFGLQPVATTLLEFDGAAVSAPHAASNHRYCHRRCGYKHAGVAXXXXXXXXXXXXXXXXXERRPSRAPPPGDKKALERVPIFVGSXXXXXXXXXXXRNEVNGAARPVSGAVTVLVAPGKKVDHMGIKVEMIGQIELYYDRGNHYKFSSLVRELDTANSLVGNRQFLFDFSNVDKPYESYSGLNVRLRYFVRVTITRNYGTITKDFEFAVQNVEPEEPVMNPSLKMEVGIEECLHIEFEYDKSKYHLRDVIIGK 410          
BLAST of jgi.p|Trimin1|351449 vs. uniprot
Match: A0A836CB39_9STRA (Vacuolar protein sorting-associated protein 26-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB39_9STRA)

HSP 1 Score: 352 bits (904), Expect = 2.900e-117
Identity = 189/254 (74.41%), Postives = 189/254 (74.41%), Query Frame = 0
Query:  157 AWFGLQPVATTLLEFDGAAVSAPHAASNHRYCHRRCGYKHAGVAXXXXXXXXXXXXXXXXXERRPSRAPPPGDKKALERVPIFVGSXXXXXXXXXXXRNEVNGAARPVSGAVTVLVAPGKKVDHMGIKVEMIGQIELYYDRGNHYKFSSLVRELDTANSLVGNRQFLFDFSNVDKPYESYSGLNVRLRYFVRVTITRNYGTITKDFEFAVQNVEPEEPVMNPSLKMEVGIEECLHIEFEYDKSKYHLRDVIIGK 410
            AWFGLQP AT LLEFDGA                                           ERRPSRAPPPGDKKALERVPIFVGS                    PVSGAVTVLVAPGKKVDHMGIKVEMIGQIELYYDRGNHYKFSSLVRELDTANSLVGNRQFLFDFSNVDKPYESYSGLNVRLRYFVRVTITRNYGTITKDFEFAVQNVEPEEPVMNPSLKMEVGIEECLHIEFEYDKSKYHLRDVIIGK
Sbjct:    2 AWFGLQPGATVLLEFDGA-------------------------------------------ERRPSRAPPPGDKKALERVPIFVGS-------------------EPVSGAVTVLVAPGKKVDHMGIKVEMIGQIELYYDRGNHYKFSSLVRELDTANSLVGNRQFLFDFSNVDKPYESYSGLNVRLRYFVRVTITRNYGTITKDFEFAVQNVEPEEPVMNPSLKMEVGIEECLHIEFEYDKSKYHLRDVIIGK 193          
BLAST of jgi.p|Trimin1|351449 vs. uniprot
Match: D8LS34_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS34_ECTSI)

HSP 1 Score: 242 bits (617), Expect = 5.420e-74
Identity = 121/193 (62.69%), Postives = 146/193 (75.65%), Query Frame = 0
Query:  218 ERRPSRAPPPGDKKALERVPIFVGSXXXXXXXXXXXRNEVNGAARPVSGAVTVLVAPGKKVDHMGIKVEMIGQIELYYDRGNHYKFSSLVRELDTANSLVGNRQFLFDFSNVDKPYESYSGLNVRLRYFVRVTITRNYGTITKDFEFAVQNVEPEEPVMNPSLKMEVGIEECLHIEFEYDKSKYHLRDVIIGK 410
            ++RP++   PGD++A E +PIF GS                     VSG  TVLVAPGKKVDH+GIK E+IGQIELYYDRGNHY+FSS+VRELDTA +LVGNRQ+ FDF+  +KPYESYSGLNVRLRYFVRVTI+     +TK+ +F VQN++ +EP    SLKMEVGIE+CLHIEFEYDKS YHL+DV+IGK
Sbjct:   21 DKRPTKPSTPGDRRASEALPIFEGS-------------------EAVSGTATVLVAPGKKVDHLGIKAELIGQIELYYDRGNHYEFSSVVRELDTAGALVGNRQYRFDFNLAEKPYESYSGLNVRLRYFVRVTISTRGKNVTKEMDFVVQNIQ-QEPEALDSLKMEVGIEDCLHIEFEYDKSAYHLQDVVIGK 193          
BLAST of jgi.p|Trimin1|351449 vs. uniprot
Match: A0A7S2UYV3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UYV3_9STRA)

HSP 1 Score: 204 bits (520), Expect = 1.840e-59
Identity = 100/149 (67.11%), Postives = 122/149 (81.88%), Query Frame = 0
Query:  264 VSGAVTVLVAPGKKVDHMGIKVEMIGQIELYYDRGNHYKFSSLVRELDTANSLVG-NRQFLFDFSNVDKPYESYSGLNVRLRYFVRVTITRNYGT-ITKDFEFAVQNVEPEEPVMNPSLKMEVGIEECLHIEFEYDKSKYHLRDVIIGK 410
            VSG V V++ PGK+++H GIKVEMIGQIE++YDRGN Y F+S+VREL+ A  + G +R + FDFS VDKPYESYSG+NVRLRYFVRVTITR+YG+ I K+ EF VQ    EE  M  +LKMEVGIE+CLHIEFEYDK++YHL DVI+GK
Sbjct:   47 VSGTVDVVLPPGKRLEHQGIKVEMIGQIEMFYDRGNSYDFTSIVRELEAAGVMEGGSRNYTFDFSTVDKPYESYSGINVRLRYFVRVTITRSYGSNIIKEEEFLVQTPSTEETAMTNTLKMEVGIEDCLHIEFEYDKNRYHLADVILGK 195          
BLAST of jgi.p|Trimin1|351449 vs. uniprot
Match: A0A6A7GAN3_9CRUS (Membrane coat complex Retromer (Fragment) n=2 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7GAN3_9CRUS)

HSP 1 Score: 193 bits (491), Expect = 7.920e-55
Identity = 92/148 (62.16%), Postives = 119/148 (80.41%), Query Frame = 0
Query:  264 VSGAVTVLVAPGKKVDHMGIKVEMIGQIELYYDRGNHYKFSSLVRELDTANSLVGNRQFLFDFSNVDKPYESYSGLNVRLRYFVRVTITRNYGT-ITKDFEFAVQNVEPEEPVMNPSLKMEVGIEECLHIEFEYDKSKYHLRDVIIGK 410
            V G + +  +  K+++H GIKVE+IGQ+EL YDRGNHY F+SL+RELD    L   + F F+F+NV+K YE+Y+G+NVRLRYFVRV I+R+YG+ I K+ +FAVQNV P+ P +N +LKMEVGIE+CLHIEFEYDKSKYHL DVI+GK
Sbjct:   66 VGGKIYIAPSGSKRLEHTGIKVELIGQVELAYDRGNHYVFTSLIRELDAPGILTAEKTFSFEFANVEKQYETYNGVNVRLRYFVRVKISRSYGSNIKKEIDFAVQNVRPD-PEINNTLKMEVGIEDCLHIEFEYDKSKYHLDDVIVGK 212          
BLAST of jgi.p|Trimin1|351449 vs. uniprot
Match: UPI000644875E (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644875E)

HSP 1 Score: 192 bits (487), Expect = 3.540e-54
Identity = 102/184 (55.43%), Postives = 129/184 (70.11%), Query Frame = 0
Query:  229 DKKALERVPIFVGSXXXXXXXXXXXRNEVNGAARPVSGAVTV-LVAPGKKVDHMGIKVEMIGQIELYYDRGNHYKFSSLVRELDTANSLVGNRQFLFDFSNVDKPYESYSGLNVRLRYFVRVTITRNYGT-ITKDFEFAVQNVEPEEPVMNPSLKMEVGIEECLHIEFEYDKSKYHLRDVIIGK 410
            DK  +E++ +FVG+                     VSG V + L    K+++H GIKVE +GQIEL+YDRGNHY+F+SLVREL  A  LV N+ F FDF NV+K YESY+G NVRLRYFVR+TI RNYG+ I K+F+  V N   + P +N ++KMEVGIE+CLHIEFEY+KSKYHL+DVIIGK
Sbjct:   32 DKGKMEKLFVFVGN-------------------EQVSGKVAINLKDKSKRIEHKGIKVEFVGQIELFYDRGNHYEFTSLVRELAPAGELVENKTFQFDFLNVEKQYESYNGTNVRLRYFVRLTIGRNYGSNIVKEFDIWVINFN-KPPDVNSNIKMEVGIEDCLHIEFEYNKSKYHLKDVIIGK 195          
BLAST of jgi.p|Trimin1|351449 vs. uniprot
Match: A0A6S8R4Z0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8R4Z0_9STRA)

HSP 1 Score: 189 bits (480), Expect = 1.380e-53
Identity = 89/152 (58.55%), Postives = 117/152 (76.97%), Query Frame = 0
Query:  260 AARPVSGAVTVLVAPGKKVDHMGIKVEMIGQIELYYDRGNHYKFSSLVRELDTANSLVGNRQFLFDFSNVDKPYESYSGLNVRLRYFVRVTITRNYGT-ITKDFEFAVQNVEPEEPVMNPSLKMEVGIEECLHIEFEYDKSKYHLRDVIIGK 410
            A  PV+G V + V  GK+++H GIK+E +GQIEL++DRG +Y F+ ++RELD    L+G +++ FD S+ +KPYESY+GLNVRLRYFVRVT+TR Y + + K+ EF VQ  +P  P  N  +KMEVGIEECLHIEFEYDKSKYHL DV++GK
Sbjct:   41 AVEPVTGVVEIRVPAGKRLEHQGIKIECVGQIELFHDRGTYYDFTCVLRELDVPGVLMGQQRYAFDLSHAEKPYESYNGLNVRLRYFVRVTVTRGYASSLIKEQEFIVQVSQPA-PETNTPVKMEVGIEECLHIEFEYDKSKYHLADVVVGK 191          
BLAST of jgi.p|Trimin1|351449 vs. uniprot
Match: A0A7S2SHM1_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2SHM1_9STRA)

HSP 1 Score: 189 bits (480), Expect = 2.280e-53
Identity = 87/150 (58.00%), Postives = 119/150 (79.33%), Query Frame = 0
Query:  261 ARPVSGAVTVLVAPGKKVDHMGIKVEMIGQIELYYDRGNHYKFSSLVRELDTANSLVGNRQFLFDFSNVDKPYESYSGLNVRLRYFVRVTITRNYGTITKDFEFAVQNVEPEEPVMNPSLKMEVGIEECLHIEFEYDKSKYHLRDVIIGK 410
            + P+ G V V +  GKK++H+GIK+E+IG+IE+ YDRGN Y+F+SLVRELD   +L   + + F+F NV K YESY+GLNV LRYF+RVT+++ YGT TK+ +F V+N++PE P +N S+KMEVGIEECLHIEFEY+KSKYH  + ++GK
Sbjct:   61 SEPIRGEVQV-IPKGKKLEHVGIKIELIGEIEMLYDRGNRYEFTSLVRELDAPGTLYSEKSYPFNFDNVPKQYESYNGLNVLLRYFLRVTVSKPYGTSTKEQDFWVENLQPE-PAINNSIKMEVGIEECLHIEFEYEKSKYHANEAVVGK 208          
BLAST of jgi.p|Trimin1|351449 vs. uniprot
Match: F4PXD9_CAVFA (Vacuolar protein sorting-associated protein 26 n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PXD9_CAVFA)

HSP 1 Score: 189 bits (480), Expect = 4.160e-53
Identity = 99/184 (53.80%), Postives = 127/184 (69.02%), Query Frame = 0
Query:  229 DKKALERVPIFVGSXXXXXXXXXXXRNEVNGAARPVSGAVTV-LVAPGKKVDHMGIKVEMIGQIELYYDRGNHYKFSSLVRELDTANSLVGNRQFLFDFSNVDKPYESYSGLNVRLRYFVRVTITRNYG-TITKDFEFAVQNVEPEEPVMNPSLKMEVGIEECLHIEFEYDKSKYHLRDVIIGK 410
            DK  +E++ +FVG+                    PVSG V + L    KK++H GIKVE +GQIELYYDRGNHY+F+SLVREL  A  L  N+ F +DF NV+K YESY+G N RLRYFVR+TI+R+Y   I K+++  V N   + P +N ++KMEVGIE+CLHIEFEY+KSKYHL+DVIIGK
Sbjct:   33 DKGKVEKLFVFVGN-------------------EPVSGKVAITLKDKAKKIEHKGIKVEFVGQIELYYDRGNHYEFTSLVRELAPAGELTENKTFTYDFMNVEKQYESYNGTNTRLRYFVRLTISRSYAPNIIKEYDIWVINYN-KPPEVNSNIKMEVGIEDCLHIEFEYNKSKYHLKDVIIGK 196          
BLAST of jgi.p|Trimin1|351449 vs. uniprot
Match: K3Z8A5_SETIT (Uncharacterized protein n=39 Tax=Poaceae TaxID=4479 RepID=K3Z8A5_SETIT)

HSP 1 Score: 187 bits (475), Expect = 9.480e-53
Identity = 88/148 (59.46%), Postives = 114/148 (77.03%), Query Frame = 0
Query:  264 VSGAVTVLVAPGKKVDHMGIKVEMIGQIELYYDRGNHYKFSSLVRELDTANSLVGNRQFLFDFSNVDKPYESYSGLNVRLRYFVRVTITRNY-GTITKDFEFAVQNVEPEEPVMNPSLKMEVGIEECLHIEFEYDKSKYHLRDVIIGK 410
            +SG V++   PGK+++HMG+K+E++GQIELY+DRGN Y F+SLVRELD    +   + + F+FS V+ PYESY+G NVRLRY ++VTI RNY G I +  +F V+N  P  P +N S+KMEVGIE+CLHIEFEY KSKYHL DVIIGK
Sbjct:   48 ISGEVSIAPVPGKRIEHMGVKIELLGQIELYFDRGNFYDFTSLVRELDVPGEIYERKTYPFEFSTVEMPYESYNGTNVRLRYILKVTIGRNYVGNIVEYRDFCVRNYSPV-PTINNSIKMEVGIEDCLHIEFEYSKSKYHLNDVIIGK 194          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351449 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YS62_9STRA3.440e-222100.00Vacuolar protein sorting-associated protein 26-dom... [more]
A0A836CB39_9STRA2.900e-11774.41Vacuolar protein sorting-associated protein 26-dom... [more]
D8LS34_ECTSI5.420e-7462.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2UYV3_9STRA1.840e-5967.11Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6A7GAN3_9CRUS7.920e-5562.16Membrane coat complex Retromer (Fragment) n=2 Tax=... [more]
UPI000644875E3.540e-5455.43hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A6S8R4Z0_9STRA1.380e-5358.55Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2SHM1_9STRA2.280e-5358.00Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
F4PXD9_CAVFA4.160e-5353.80Vacuolar protein sorting-associated protein 26 n=1... [more]
K3Z8A5_SETIT9.480e-5359.46Uncharacterized protein n=39 Tax=Poaceae TaxID=447... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR028934Vacuolar protein sorting protein 26 relatedPFAMPF03643Vps26coord: 255..410
e-value: 6.6E-56
score: 189.3
IPR028934Vacuolar protein sorting protein 26 relatedPANTHERPTHR12233VACUOLAR PROTEIN SORTING 26 RELATEDcoord: 263..410
IPR014752Arrestin-like, C-terminalGENE3D2.60.40.640coord: 252..370
e-value: 1.0E-37
score: 130.9
IPR014752Arrestin-like, C-terminalGENE3D2.60.40.640coord: 373..410
e-value: 5.2E-14
score: 53.8
NoneNo IPR availablePANTHERPTHR12233:SF1VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 26coord: 263..410
NoneNo IPR availableSUPERFAMILY140860Pseudo ankyrin repeat-likecoord: 64..147

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_90contigContig_90:600233..609209 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351449mRNA_11475Tribonema minus UTEX_B_3156 mRNAContig_90 600233..609209 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|351449|estExt_Genemark1.C_Ctg_900075 ID=Trimin1|351449|estExt_Genemark1.C_Ctg_900075|Name=jgi.p|Trimin1|351449|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=410bp
MLASHILAFVPPSIIVRSTSRTFLGVTEQIHKAEVALRSCACCGDVTGLD
LVHTTYDLPLLSDHCQLAARRGHLGALQWLRGHDCPWDDGTCNSAAYCGS
LAVLQWARANGCGWNEETCTYAAEGGQLEVLQWAHINGCPWNEDTCSNAA
RRGNFEAWFGLQPVATTLLEFDGAAVSAPHAASNHRYCHRRCGYKHAGVA
WFGLQPGATVLLEFDGAERRPSRAPPPGDKKALERVPIFVGSEKALERVL
MFVRNEVNGAARPVSGAVTVLVAPGKKVDHMGIKVEMIGQIELYYDRGNH
YKFSSLVRELDTANSLVGNRQFLFDFSNVDKPYESYSGLNVRLRYFVRVT
ITRNYGTITKDFEFAVQNVEPEEPVMNPSLKMEVGIEECLHIEFEYDKSK
YHLRDVIIGK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR028934Vps26-related
IPR014752Arrestin-like_C