Trimin1|351448|estExt_Genemark1.C_Ctg_900074 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|351448
Unique Name	Trimin1\|351448\|estExt_Genemark1.C_Ctg_900074
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	104

Homology

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BLAST of jgi.p|Trimin1|351448 vs. uniprot
Match: A0A835YHQ2_9STRA (Cyclin-dependent kinases regulatory subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHQ2_9STRA)

HSP 1 Score: 224 bits (572), Expect = 1.060e-74
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0

Query:    1 MGTRIEYSDKYQDSNWEYRHVILPKELARGLPNTRLLQEEEWRLLGVQQSRGWVHYAIHRPEPHILLFHRPLGTDPLSGQVDPEKEREAKEGYAEHLLLNMRR 103
            MGTRIEYSDKYQDSNWEYRHVILPKELARGLPNTRLLQEEEWRLLGVQQSRGWVHYAIHRPEPHILLFHRPLGTDPLSGQVDPEKEREAKEGYAEHLLLNMRR
Sbjct:    1 MGTRIEYSDKYQDSNWEYRHVILPKELARGLPNTRLLQEEEWRLLGVQQSRGWVHYAIHRPEPHILLFHRPLGTDPLSGQVDPEKEREAKEGYAEHLLLNMRR 103

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BLAST of jgi.p|Trimin1|351448 vs. uniprot
Match: D7G7T5_ECTSI (Cyclin-dependent kinases regulatory subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7T5_ECTSI)

HSP 1 Score: 163 bits (412), Expect = 3.580e-50
Identity = 72/101 (71.29%), Postives = 86/101 (85.15%), Query Frame = 0

Query:    1 MGTRIEYSDKYQDSNWEYRHVILPKELARGLPNTRLLQEEEWRLLGVQQSRGWVHYAIHRPEPHILLFHRPLGTDPLSGQVDPEKEREAKEGYAEHLLLNM 101
            M  RIEYS+KYQD ++EYRHVILPK+LA+GLP +R+L E+EWR LGVQQSRGW+HYAIHRPEPHILLF RPLGTDP+SG+VDP  E+EAK+ Y + L   M
Sbjct:    1 MAARIEYSEKYQDDSFEYRHVILPKDLAKGLPKSRVLTEQEWRGLGVQQSRGWMHYAIHRPEPHILLFKRPLGTDPVSGKVDPVLEQEAKKAYQQELADKM 101

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BLAST of jgi.p|Trimin1|351448 vs. uniprot
Match: A0A7S2BBH9_9STRA (Cyclin-dependent kinases regulatory subunit n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BBH9_9STRA)

HSP 1 Score: 162 bits (411), Expect = 8.660e-50
Identity = 71/98 (72.45%), Postives = 82/98 (83.67%), Query Frame = 0

Query:    4 RIEYSDKYQDSNWEYRHVILPKELARGLPNTRLLQEEEWRLLGVQQSRGWVHYAIHRPEPHILLFHRPLGTDPLSGQVDPEKEREAKEGYAEHLLLNM 101
            RIEYS+KYQD  +EYRHVILPKELA+ LP  RLL E+EWR +GVQQSRGW HYAIHRPEPHILLF RPLGTDP++G++DP  EREAK+ Y  +L LN 
Sbjct:   22 RIEYSEKYQDDKYEYRHVILPKELAKNLPKARLLSEQEWRGIGVQQSRGWAHYAIHRPEPHILLFRRPLGTDPVTGKIDPALEREAKDAYQNNLELNQ 119

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BLAST of jgi.p|Trimin1|351448 vs. uniprot
Match: W7T145_9STRA (Cyclin-dependent kinases regulatory subunit n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T145_9STRA)

HSP 1 Score: 159 bits (402), Expect = 9.330e-49
Identity = 72/97 (74.23%), Postives = 81/97 (83.51%), Query Frame = 0

Query:    1 MGTRIEYSDKYQDSNWEYRHVILPKELARGLPNTRLLQEEEWRLLGVQQSRGWVHYAIHRPEPHILLFHRPLGTDPLSGQVDPEKEREAKEGYAEHL 97
            M +RIEYS+KY D N EYRHVILPKE+AR LP  RLL E EWR +GVQQSRGW HYAIHRPEPHILLF RPLGTDP++G+V+ E EREAKE YAE +
Sbjct:    1 MASRIEYSEKYMDDNHEYRHVILPKEIARSLPKQRLLTESEWRGIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPVTGKVNAELEREAKEKYAESM 97

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BLAST of jgi.p|Trimin1|351448 vs. uniprot
Match: A0A7S2BWV6_9STRA (Cyclin-dependent kinases regulatory subunit n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BWV6_9STRA)

HSP 1 Score: 159 bits (401), Expect = 2.320e-48
Identity = 71/103 (68.93%), Postives = 84/103 (81.55%), Query Frame = 0

Query:    1 MGTRIEYSDKYQDSNWEYRHVILPKELARGLPNTRLLQEEEWRLLGVQQSRGWVHYAIHRPEPHILLFHRPLGTDPLSGQVDPEKEREAKEGYAEHLLLNMRR 103
            M +RIEYS+KY D  +EYRHVILPKELA+ LP  RLL E+EWR +GVQQSRGW HYAIHRPEPHILLF RPLGTDP++G+VD E ER+AK+ Y   L +N R+
Sbjct:   20 MASRIEYSEKYTDDAFEYRHVILPKELAKNLPKARLLGEQEWRGIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPVTGKVDVELERDAKDAYNASLAVNQRK 122

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BLAST of jgi.p|Trimin1|351448 vs. uniprot
Match: A0A7S3MEH0_9STRA (Cyclin-dependent kinases regulatory subunit n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MEH0_9STRA)

HSP 1 Score: 156 bits (395), Expect = 1.090e-47
Identity = 71/103 (68.93%), Postives = 82/103 (79.61%), Query Frame = 0

Query:    1 MGTR-IEYSDKYQDSNWEYRHVILPKELARGLPNTRLLQEEEWRLLGVQQSRGWVHYAIHRPEPHILLFHRPLGTDPLSGQVDPEKEREAKEGYAEHLLLNMR 102
            M T+ IEYS+KYQD  +EYRHVILPK+ AR LP  R L E EWR +GVQQSRGW HYA H+PEPHILLF RPLGTDP+SG+VDPE EREA+E Y + L +N R
Sbjct:    1 MSTKQIEYSEKYQDGKYEYRHVILPKDSARNLPKNRTLTELEWRNIGVQQSRGWEHYACHKPEPHILLFRRPLGTDPVSGEVDPELEREAREKYQQELAVNQR 103

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BLAST of jgi.p|Trimin1|351448 vs. uniprot
Match: A0A7S1UE56_9STRA (Cyclin-dependent kinases regulatory subunit n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UE56_9STRA)

HSP 1 Score: 157 bits (396), Expect = 2.010e-47
Identity = 69/100 (69.00%), Postives = 82/100 (82.00%), Query Frame = 0

Query:    2 GTRIEYSDKYQDSNWEYRHVILPKELARGLPNTRLLQEEEWRLLGVQQSRGWVHYAIHRPEPHILLFHRPLGTDPLSGQVDPEKEREAKEGYAEHLLLNM 101
             +RIEYS+KY D ++EYRHVILPKELA+ +P TR+L E+EWR LGVQQSRGW HYAIHRPEPHILLF RPLGTDP +G+VD + +REAKE Y   L  N+
Sbjct:   35 ASRIEYSEKYNDEDFEYRHVILPKELAKSIPKTRILAEQEWRNLGVQQSRGWEHYAIHRPEPHILLFRRPLGTDPTTGRVDADLQREAKESYLRTLRENL 134

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BLAST of jgi.p|Trimin1|351448 vs. uniprot
Match: A0A7R9U1M9_9STRA (Cyclin-dependent kinases regulatory subunit n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U1M9_9STRA)

HSP 1 Score: 157 bits (396), Expect = 2.210e-47
Identity = 70/100 (70.00%), Postives = 81/100 (81.00%), Query Frame = 0

Query:    2 GTRIEYSDKYQDSNWEYRHVILPKELARGLPNTRLLQEEEWRLLGVQQSRGWVHYAIHRPEPHILLFHRPLGTDPLSGQVDPEKEREAKEGYAEHLLLNM 101
             +RIEYS+KY D ++EYRHVILPKELA+ L  T+LL + EWR LGVQQSRGW HYAIHRPEPHILLF RPLGTDP +G+VDPE +REAKE Y   L  N+
Sbjct:   38 ASRIEYSEKYNDQDFEYRHVILPKELAKRLSKTKLLSDAEWRELGVQQSRGWEHYAIHRPEPHILLFRRPLGTDPTTGRVDPEAQREAKEAYMRSLTENL 137

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BLAST of jgi.p|Trimin1|351448 vs. uniprot
Match: A0A6H5L2I6_9PHAE (Cyclin-dependent kinases regulatory subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L2I6_9PHAE)

HSP 1 Score: 155 bits (391), Expect = 4.170e-47
Identity = 70/100 (70.00%), Postives = 84/100 (84.00%), Query Frame = 0

Query:    4 RIEYSDKYQDSNWEYRHVILPKELARGLPNTRLLQEEEWRLLGVQQSRGWVHYAIHRPEPHILLFHRPLGTDPLSGQVDPEKEREAKEGYAEHLLLNMRR 103
            RI+YS+KY D ++EYRHVILPKE A+ LP +RLL E+EWR LGVQQSRGW HYA+H PEPHILLF RPLGT+P++G+VDPE EREAKE YAE L   +R+
Sbjct:    3 RIDYSEKYVDGSFEYRHVILPKETAKILPQSRLLTEDEWRHLGVQQSRGWQHYAVHTPEPHILLFRRPLGTNPVTGRVDPELEREAKEKYAEELSDGIRK 102

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BLAST of jgi.p|Trimin1|351448 vs. uniprot
Match: A0A6S9ANL1_9STRA (Cyclin-dependent kinases regulatory subunit n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S9ANL1_9STRA)

HSP 1 Score: 154 bits (389), Expect = 8.950e-47
Identity = 70/92 (76.09%), Postives = 78/92 (84.78%), Query Frame = 0

Query:    2 GTRIEYSDKYQDSNWEYRHVILPKELARGLPNTRLLQEEEWRLLGVQQSRGWVHYAIHRPEPHILLFHRPLGTDPLSGQVDPEKEREAKEGY 93
             +RIEYS+KY D+  EYRHVILPK+LA+ LP  RLL E EWR +GVQQSRGW+HYAIHRPEPHILLF RPLGTDP SGQVDPE EREA+E Y
Sbjct:    4 ASRIEYSEKYADTANEYRHVILPKDLAKTLPKNRLLSESEWRGIGVQQSRGWMHYAIHRPEPHILLFRRPLGTDPQSGQVDPELEREAREEY 95

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|351448 vs. uniprot

BLAST of jgi.p|Trimin1|351448 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A835YHQ2_9STRA	1.060e-74	100.00	Cyclin-dependent kinases regulatory subunit n=1 Ta...	[more]
D7G7T5_ECTSI	3.580e-50	71.29	Cyclin-dependent kinases regulatory subunit n=2 Ta...	[more]
A0A7S2BBH9_9STRA	8.660e-50	72.45	Cyclin-dependent kinases regulatory subunit n=1 Ta...	[more]
W7T145_9STRA	9.330e-49	74.23	Cyclin-dependent kinases regulatory subunit n=2 Ta...	[more]
A0A7S2BWV6_9STRA	2.320e-48	68.93	Cyclin-dependent kinases regulatory subunit n=1 Ta...	[more]
A0A7S3MEH0_9STRA	1.090e-47	68.93	Cyclin-dependent kinases regulatory subunit n=1 Ta...	[more]
A0A7S1UE56_9STRA	2.010e-47	69.00	Cyclin-dependent kinases regulatory subunit n=2 Ta...	[more]
A0A7R9U1M9_9STRA	2.210e-47	70.00	Cyclin-dependent kinases regulatory subunit n=1 Ta...	[more]
A0A6H5L2I6_9PHAE	4.170e-47	70.00	Cyclin-dependent kinases regulatory subunit n=2 Ta...	[more]
A0A6S9ANL1_9STRA	8.950e-47	76.09	Cyclin-dependent kinases regulatory subunit n=2 Ta...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000789	Cyclin-dependent kinase, regulatory subunit	PRINTS	PR00296	CYCLINKINASE	coord: 56..70 score: 77.44 coord: 41..55 score: 78.97 coord: 4..18 score: 55.38 coord: 19..33 score: 54.36
IPR000789	Cyclin-dependent kinase, regulatory subunit	SMART	SM01084	CKS_2	coord: 4..73 e-value: 4.6E-41 score: 152.4
IPR000789	Cyclin-dependent kinase, regulatory subunit	PFAM	PF01111	CKS	coord: 5..71 e-value: 1.5E-34 score: 118.1
IPR036858	Cyclin-dependent kinase, regulatory subunit superfamily	GENE3D	3.30.170.10		coord: 1..81 e-value: 6.2E-36 score: 124.6
IPR036858	Cyclin-dependent kinase, regulatory subunit superfamily	SUPERFAMILY	55637	Cell cycle regulatory proteins	coord: 4..75
None	No IPR available	PANTHER	PTHR23415:SF29	CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT	coord: 1..84
None	No IPR available	PANTHER	PTHR23415	CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7	coord: 1..84

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_90	contig	Contig_90:594888..598629 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|351448	mRNA_11474	Tribonema minus UTEX_B_3156	mRNA	Contig_90 594888..598842 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|351448|estExt_Genemark1.C_Ctg_900074 ID=Trimin1|351448|estExt_Genemark1.C_Ctg_900074|Name=jgi.p|Trimin1|351448|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=104bp
MGTRIEYSDKYQDSNWEYRHVILPKELARGLPNTRLLQEEEWRLLGVQQS
RGWVHYAIHRPEPHILLFHRPLGTDPLSGQVDPEKEREAKEGYAEHLLLN
MRR*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000789	Cyclin-dep_kinase_reg-sub
IPR036858	Cyclin-dep_kinase_reg-sub_sf