Trimin1|351417|estExt_Genemark1.C_Ctg_900009 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|351417
Unique NameTrimin1|351417|estExt_Genemark1.C_Ctg_900009
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length567
Homology
BLAST of jgi.p|Trimin1|351417 vs. uniprot
Match: A0A835YHH8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHH8_9STRA)

HSP 1 Score: 780 bits (2013), Expect = 5.600e-279
Identity = 565/566 (99.82%), Postives = 565/566 (99.82%), Query Frame = 0
Query:    1 MRRSLIDSKAAIQTHGQGRCCWSPERCVAAXXXXXXSPEGNSRRKGSCLCCGRTGTIPQTAASKAAKPLRRAMLPPRMQMWALEGLCLVETSKRPKLSVHFAEDPTVVLGYADPDYDRRSIKVDLTRTPYALFHKDYYLMNRPAEYSPKHTGKEGRSSSLSDDEEELHTEGEGSSSDDEARAEEVVRQKRMISLERRRALRPNFSGIWKRSRIEGFIELLAFSGVPRKAALAAAQKRPVHIIDHDDDYFRLIIKNGLVKSDAHYIIGDEPRIEKSGATDYEVVLDWGHGTANGRAESLVLTSISVNAKTGGSDSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAIEMIAVRTLEDGGDVLVLQQIVRKPATGEEARARHIFKRITARNSGALSAKPSTPRGGKPAVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTQLKPAFFAAPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASACGGSGEAGTCDTAXXXXXXXVAALSEALAQLKCXXXXXXXXXXXXXXXXAGAPMVVSASQA 566
            MRRSLIDSKAAIQTHGQGRCCWSPERCVAAXXXXXXSPEGNSRRKGSCLCCGRTGTIPQTAASKAAKPLRRAMLPPRMQMWALEGLCLVETSKRPKLSVHFAEDPTVVLGYADPDYDRRSIKVDLTRTPYALFHKDYYLMNRPAEYSPKHTGKEGRSSSLSDDEEELHTEGEGSSSDDEARAEEVVRQKRMISLERRRALRPNFSGIWKRSRIEGFIELLAFSGVPRKAALAAAQKRPVHIIDHDDDYFRLIIKNGLVKSDAHYIIGDEPRIEKSGATDYEVVLDWGHGTANGRAESLVLTSISVNAKTGGSDSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAIEMIAVRTLEDGGDVLVLQQIVRKPATGEEARARHIFKRITARNSGALSAKPSTPRGGKPAVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTQLKPAFFAAPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASACGGSGEAGTCDTAXXXXXXXVAALSEALAQLKCXXXXXXXXXXXXXXX AGAPMVVSASQA
Sbjct:    1 MRRSLIDSKAAIQTHGQGRCCWSPERCVAAXXXXXXSPEGNSRRKGSCLCCGRTGTIPQTAASKAAKPLRRAMLPPRMQMWALEGLCLVETSKRPKLSVHFAEDPTVVLGYADPDYDRRSIKVDLTRTPYALFHKDYYLMNRPAEYSPKHTGKEGRSSSLSDDEEELHTEGEGSSSDDEARAEEVVRQKRMISLERRRALRPNFSGIWKRSRIEGFIELLAFSGVPRKAALAAAQKRPVHIIDHDDDYFRLIIKNGLVKSDAHYIIGDEPRIEKSGATDYEVVLDWGHGTANGRAESLVLTSISVNAKTGGSDSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAIEMIAVRTLEDGGDVLVLQQIVRKPATGEEARARHIFKRITARNSGALSAKPSTPRGGKPAVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTQLKPAFFAAPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASACGGSGEAGTCDTAXXXXXXXVAALSEALAQLKCXXXXXXXXXXXXXXXEAGAPMVVSASQA 566          
BLAST of jgi.p|Trimin1|351417 vs. uniprot
Match: A0A836CAN9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAN9_9STRA)

HSP 1 Score: 202 bits (515), Expect = 1.410e-56
Identity = 140/299 (46.82%), Postives = 165/299 (55.18%), Query Frame = 0
Query:  119 RSIKVDLTRTPYALFHKDYYLMNRPAEYSPKHT-GKEGRSSS--LSDDEEELHTEGEGSSSDDE---ARA--------------------EEVVRQKRMISLERRR---ALRPNFSGIWKRSRIEGFIELLAFSGVPRKAALAAAQKRPVHIIDHDDDYFRLIIKNGLVKSDAHYIIGDEPRIEKSGATDYEVVLDWGHGTANGRAESLVLTSISVNAKTGGSDSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAIEMIAVRTLEDGGDVLVLQQIVRKPATGEEARARHIFKRIT 388
            RS++VDL+R+PYALFHKD+Y    P EYSPK +  +EG  +    S DEE+L TEGE SSS+D+   AR                           +R  S E RR   A RP+FSG+WKR+R+EGFIELLAFSGVPRKAAL+AAQ+R VHIIDHDDDYFRLI+KNGL K D HYII      EK         L +            +  +                                          AA +EMIAVRTLEDGG  LVLQQIVR+PATGEEARARHIFKR+T
Sbjct:   16 RSVEVDLSRSPYALFHKDFYFKTHPQEYSPKSSRAREGAHAPNWTSSDEEDLATEGELSSSEDDDCGARGGGSSXXXXXXXXXXXXXXXXXXXAMHRRTPSAELRRRAAAARPDFSGVWKRARVEGFIELLAFSGVPRKAALSAAQRRAVHIIDHDDDYFRLIVKNGLTKVDGHYII------EK---------LKFXXXXXXXXXXXXIAAA------------------------------------------AAPLEMIAVRTLEDGGATLVLQQIVRRPATGEEARARHIFKRLT 257          
BLAST of jgi.p|Trimin1|351417 vs. uniprot
Match: D7G864_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G864_ECTSI)

HSP 1 Score: 153 bits (387), Expect = 2.190e-37
Identity = 122/381 (32.02%), Postives = 169/381 (44.36%), Query Frame = 0
Query:   90 ETSKRPKLSVHFAEDPTVVLGYADP--DYDRRSIKVDLTRTPYALFHKDYYLMNR----------------PA-----------------------------------EYSPKHTGKEGRS----------SSLSDDEEELHT--EGEGSSSDDEARAEE--------------VVRQKRMISLERRRALRPNFSGIWKRSRIEGFIELLAFSGVPRKAALAAAQKRPVHIIDHDDDYFRLIIKNGLVKSDAHYIIGDEPRIEKSGATDYEVVLDWGHGTANGRAESLVLTSISVNAKTGGSDSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAIEMIAVRTLEDGGDVLVLQQIVRKPATGEEARARHIFKRITARN 391
            E    P+ +V F   P   +  AD   DY+RRSI VDL++TP+ALF +D  +M +                PA                                   + SP     E R            S S +  E HT  E + + +D  + A++              VV Q+++       A  P F G+WKR+  EG+ ELL  SGVP++A   A +K PVHIIDHD  YFRLI+KNGL K D  + IGDEP+ +  G   YEV ++W H + +GR + L LTSI   A                                         E+IA+R+L +GGD +VL QIVR+PA G E RA+H FKR+T+++
Sbjct:   67 ELDASPRRTVRFPHQPISAIWVADSVLDYNRRSIVVDLSKTPFALFRRDAVMMKQARTSVDPSAPLPPPGPPALSPPRLRAAAAACXXXXXXXXXRSPVGSSDAAADSDASPSPPSAERRRPGGDRLAKLWESESSESSEGHTDLETDDTETDWHSDADDCCSVGSGTEEAPPCVVEQQQLRRGSNSEAGSPAFYGVWKRTSSEGYEELLLSSGVPKRAVAMAMKKHPVHIIDHDGSYFRLIVKNGLSKVDNTFFIGDEPKQDIIGKQSYEVSMNWAHLSGHGREDELALTSICHQAGE---------------------------------------EVIAIRSLHEGGDQMVLTQIVRRPAEGYEVRAKHFFKRVTSKS 408          
BLAST of jgi.p|Trimin1|351417 vs. uniprot
Match: A0A835ZCE6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCE6_9STRA)

HSP 1 Score: 104 bits (259), Expect = 5.240e-20
Identity = 68/137 (49.64%), Postives = 73/137 (53.28%), Query Frame = 0
Query:  274 KSGATDYEVVLDWGHGTANGRAESLVLTSISVNAKTGGSDSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAIEMIAVRTLEDGGDVLVLQQIVRKPATGEEARARHIFKRITARNSGALSAKPSTPRGGKPAVA 410
            K+  TDYEVVLDWGHGTANG AE LVL S++ NAK GG  S                              AAAIE+IAVRTLEDGGDVLVL Q    P   +  RA HI  R   R  G    KP  PRG KPAVA
Sbjct:   55 KTSTTDYEVVLDWGHGTANGPAEPLVLASVTFNAKAGGDSSGGG---------------------------AAAIELIAVRTLEDGGDVLVLHQTGEWPIIRKRMRAPHIQARRRPR--GTHVVKPCMPRGRKPAVA 162          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351417 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A835YHH8_9STRA5.600e-27999.82Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CAN9_9STRA1.410e-5646.82Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7G864_ECTSI2.190e-3732.02Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZCE6_9STRA5.240e-2049.64Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 310..341
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 147..164
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 146..184

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_90contigContig_90:65028..68506 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351417mRNA_11406Tribonema minus UTEX_B_3156 mRNAContig_90 64855..68676 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|351417|estExt_Genemark1.C_Ctg_900009 ID=Trimin1|351417|estExt_Genemark1.C_Ctg_900009|Name=jgi.p|Trimin1|351417|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=567bp
MRRSLIDSKAAIQTHGQGRCCWSPERCVAAAAAAAASPEGNSRRKGSCLC
CGRTGTIPQTAASKAAKPLRRAMLPPRMQMWALEGLCLVETSKRPKLSVH
FAEDPTVVLGYADPDYDRRSIKVDLTRTPYALFHKDYYLMNRPAEYSPKH
TGKEGRSSSLSDDEEELHTEGEGSSSDDEARAEEVVRQKRMISLERRRAL
RPNFSGIWKRSRIEGFIELLAFSGVPRKAALAAAQKRPVHIIDHDDDYFR
LIIKNGLVKSDAHYIIGDEPRIEKSGATDYEVVLDWGHGTANGRAESLVL
TSISVNAKTGGSDSNGSGGGGGSSDGGGSDGGGGSGGGSSGSGGAAAIEM
IAVRTLEDGGDVLVLQQIVRKPATGEEARARHIFKRITARNSGALSAKPS
TPRGGKPAVAVAAAVAAAAEAAAAACDSSTEGAECEAAAAAAAVAVATQL
KPAFFAAPAAATAAEAEVPAAQEDAAAAAAQGEEQDAAAAAAAAAAAAAA
AVASACGGSGEAGTCDTAAAAQAAPVAALSEALAQLKCAGSAVAAAAPAA
GGGEAGAPMVVSASQA*
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