Trimin1|351244|estExt_Genemark1.C_Ctg_840038 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|351244
Unique Name	Trimin1\|351244\|estExt_Genemark1.C_Ctg_840038
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	430

Homology

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BLAST of jgi.p|Trimin1|351244 vs. uniprot
Match: A0A835YID5_9STRA (PDZ domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YID5_9STRA)

HSP 1 Score: 640 bits (1651), Expect = 2.140e-228
Identity = 429/429 (100.00%), Postives = 429/429 (100.00%), Query Frame = 0

Query:    1 MPFDALKKLLKKPIAESLSDSGARAAPAEGAPADAGNLELTFTEDVLGMKLQEADGRVVVTGVVEGSQAQRLGVATGDVLLQLEGQAVHTCSGFAEVVQAIGRPVHVTVGKRRAAAAASVGDAFAASFRKMQDSANTNFEQAKAKVAAXXXXXXLSADARAAQREAVLRAAEARTKAWDHRLQRKRAANAXXXXXXXXXXXXXXXXXXXXXXXXAHPETQRVVELCRSQEAAMAAQLGYDPFKSVTVAHAEARQAXXXXXXXXXXXXXXXXXXXXXXXNGDSPDAAAVALAVEESEQMEALALMEEVDAALSLILSHSGDXXXXXXXXXXXXXDDAARAAVETLHKLLSNMATKREDKFRRVRVSNRAFAERVAAVPGGVDVMVCAGFQLLSDEAEAYLFYAEPLAPPSLRLRVALHRLALVRRALGTA 429
            MPFDALKKLLKKPIAESLSDSGARAAPAEGAPADAGNLELTFTEDVLGMKLQEADGRVVVTGVVEGSQAQRLGVATGDVLLQLEGQAVHTCSGFAEVVQAIGRPVHVTVGKRRAAAAASVGDAFAASFRKMQDSANTNFEQAKAKVAAXXXXXXLSADARAAQREAVLRAAEARTKAWDHRLQRKRAANAXXXXXXXXXXXXXXXXXXXXXXXXAHPETQRVVELCRSQEAAMAAQLGYDPFKSVTVAHAEARQAXXXXXXXXXXXXXXXXXXXXXXXNGDSPDAAAVALAVEESEQMEALALMEEVDAALSLILSHSGDXXXXXXXXXXXXXDDAARAAVETLHKLLSNMATKREDKFRRVRVSNRAFAERVAAVPGGVDVMVCAGFQLLSDEAEAYLFYAEPLAPPSLRLRVALHRLALVRRALGTA
Sbjct:    1 MPFDALKKLLKKPIAESLSDSGARAAPAEGAPADAGNLELTFTEDVLGMKLQEADGRVVVTGVVEGSQAQRLGVATGDVLLQLEGQAVHTCSGFAEVVQAIGRPVHVTVGKRRAAAAASVGDAFAASFRKMQDSANTNFEQAKAKVAAXXXXXXLSADARAAQREAVLRAAEARTKAWDHRLQRKRAANAXXXXXXXXXXXXXXXXXXXXXXXXAHPETQRVVELCRSQEAAMAAQLGYDPFKSVTVAHAEARQAXXXXXXXXXXXXXXXXXXXXXXXNGDSPDAAAVALAVEESEQMEALALMEEVDAALSLILSHSGDXXXXXXXXXXXXXDDAARAAVETLHKLLSNMATKREDKFRRVRVSNRAFAERVAAVPGGVDVMVCAGFQLLSDEAEAYLFYAEPLAPPSLRLRVALHRLALVRRALGTA 429

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BLAST of jgi.p|Trimin1|351244 vs. uniprot
Match: A0A7S3HTB3_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HTB3_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 7.310e-5
Identity = 25/55 (45.45%), Postives = 39/55 (70.91%), Query Frame = 0

Query:  335 DAARAAVETLHKLLSNMATKRED-KFRRVRVSNRAFAERVAAVPGGVDVMVCAGF 388
            +  + AV T+ +++ N+A   ED K R +RVSN+AF  +VAAVPGG +++V AG+
Sbjct:    4 ERGKVAVSTVSRMIQNLAAAPEDPKLRSIRVSNKAFQSKVAAVPGGAELLVAAGY 58

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|351244 vs. uniprot

BLAST of jgi.p|Trimin1|351244 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A835YID5_9STRA	2.140e-228	100.00	PDZ domain-containing protein n=1 Tax=Tribonema mi...	[more]
A0A7S3HTB3_9STRA	7.310e-5	45.45	Hypothetical protein n=1 Tax=Spumella elongata Tax...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001478	PDZ domain	SMART	SM00228	pdz_new	coord: 45..113 e-value: 0.0049 score: 26.1
IPR001478	PDZ domain	PROSITE	PS50106	PDZ	coord: 37..113 score: 9.3303
None	No IPR available	SMART	SM00580	PGNneu	coord: 339..402 e-value: 4.5E-4 score: 29.5
None	No IPR available	GENE3D	1.20.58.2190		coord: 333..412 e-value: 9.3E-15 score: 56.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 256..280
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 139..215
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 165..186
None	No IPR available	CDD	cd00136	PDZ	coord: 47..109 e-value: 2.22942E-7 score: 45.7593
None	No IPR available	CDD	cd09212	PUB	coord: 336..418 e-value: 5.04526E-17 score: 73.9556
IPR018997	PUB domain	PFAM	PF09409	PUB	coord: 335..404 e-value: 9.2E-13 score: 48.0
IPR041489	PDZ domain 6	PFAM	PF17820	PDZ_6	coord: 59..109 e-value: 5.3E-7 score: 29.5
IPR036034	PDZ superfamily	GENE3D	2.30.42.10		coord: 29..120 e-value: 1.5E-9 score: 39.8
IPR036034	PDZ superfamily	SUPERFAMILY	50156	PDZ domain-like	coord: 45..111
IPR036339	PUB-like domain superfamily	SUPERFAMILY	143503	PUG domain-like	coord: 335..417

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_84	contig	Contig_84:281058..284243 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|351244	mRNA_12116	Tribonema minus UTEX_B_3156	mRNA	Contig_84 280414..284254 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|351244|estExt_Genemark1.C_Ctg_840038 ID=Trimin1|351244|estExt_Genemark1.C_Ctg_840038|Name=jgi.p|Trimin1|351244|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=430bp
MPFDALKKLLKKPIAESLSDSGARAAPAEGAPADAGNLELTFTEDVLGMK
LQEADGRVVVTGVVEGSQAQRLGVATGDVLLQLEGQAVHTCSGFAEVVQA
IGRPVHVTVGKRRAAAAASVGDAFAASFRKMQDSANTNFEQAKAKVAAPP
PPPPLSADARAAQREAVLRAAEARTKAWDHRLQRKRAANAASSQSPEPPG
GEGREAAAAAAAAAAHPETQRVVELCRSQEAAMAAQLGYDPFKSVTVAHA
EARQAAAAAAAPPPPPPTAAHPAAAAAANGDSPDAAAVALAVEESEQMEA
LALMEEVDAALSLILSHSGDGDGSSGGGGGGGGDDAARAAVETLHKLLSN
MATKREDKFRRVRVSNRAFAERVAAVPGGVDVMVCAGFQLLSDEAEAYLF
YAEPLAPPSLRLRVALHRLALVRRALGTA*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001478	PDZ
IPR018997	PUB_domain
IPR041489	PDZ_6
IPR036034	PDZ_sf
IPR036339	PUB-like_dom_sf