Trimin1|351192|estExt_Genemark1.C_Ctg_830009 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|351192
Unique NameTrimin1|351192|estExt_Genemark1.C_Ctg_830009
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length205
Homology
BLAST of jgi.p|Trimin1|351192 vs. uniprot
Match: A0A835YIR5_9STRA (Clathrin light chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIR5_9STRA)

HSP 1 Score: 392 bits (1007), Expect = 9.610e-138
Identity = 204/204 (100.00%), Postives = 204/204 (100.00%), Query Frame = 0
Query:    1 MDNDSDFFGEDQQTPIDATADITPSAEGYTDFGGDYVGGGYKGGGAEDYQQQQDAGQYGSLDGDEMNPAEDGSNGHMAFQGMPAPEEVADNALTRFMGEWEAKLKEKAQAEEAAKQQALQAARGDHDKFFAERELKKETRMNSNRTQEQVFLEQLESDLESENPWERIVSLVDTQAEPSGPFKDTSRIKTMIIQLKNDPIHASA 204
            MDNDSDFFGEDQQTPIDATADITPSAEGYTDFGGDYVGGGYKGGGAEDYQQQQDAGQYGSLDGDEMNPAEDGSNGHMAFQGMPAPEEVADNALTRFMGEWEAKLKEKAQAEEAAKQQALQAARGDHDKFFAERELKKETRMNSNRTQEQVFLEQLESDLESENPWERIVSLVDTQAEPSGPFKDTSRIKTMIIQLKNDPIHASA
Sbjct:    1 MDNDSDFFGEDQQTPIDATADITPSAEGYTDFGGDYVGGGYKGGGAEDYQQQQDAGQYGSLDGDEMNPAEDGSNGHMAFQGMPAPEEVADNALTRFMGEWEAKLKEKAQAEEAAKQQALQAARGDHDKFFAERELKKETRMNSNRTQEQVFLEQLESDLESENPWERIVSLVDTQAEPSGPFKDTSRIKTMIIQLKNDPIHASA 204          
BLAST of jgi.p|Trimin1|351192 vs. uniprot
Match: D7G9H3_ECTSI (Clathrin light chain n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G9H3_ECTSI)

HSP 1 Score: 135 bits (341), Expect = 2.610e-36
Identity = 74/128 (57.81%), Postives = 91/128 (71.09%), Query Frame = 0
Query:   77 MAFQGMPAPEEVADNALTRFMGEWEAKLKEKAQAEEAAKQQALQAARGDHDKFFAERELKKETRMNSNRTQEQVFLEQLESDLESENPWERIVSLVDTQAEPSGPFKDTSRIKTMIIQLKNDPIHASA 204
            M   GMPAPE+V  +AL  FM  W+A L EKA+ E  AK  AL+AA+ D +    ER   KE +M  NR QEQ+FLEQLE +LESENPWER+VSLVDTQ+E    FKDTSR+ +++IQLKNDPI  S+
Sbjct:   95 MPDMGMPAPEDVEPSALDEFMERWQAGLVEKARIEAEAKAAALEAAKADLETHSVERAANKEAKMGQNREQEQIFLEQLEGELESENPWERVVSLVDTQSEVVEDFKDTSRMTSILIQLKNDPIDTSS 222          
BLAST of jgi.p|Trimin1|351192 vs. uniprot
Match: A0A7S3Y6V3_HETAK (Clathrin light chain n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6V3_HETAK)

HSP 1 Score: 107 bits (267), Expect = 6.130e-25
Identity = 62/139 (44.60%), Postives = 90/139 (64.75%), Query Frame = 0
Query:   66 MNPAEDGSNGHMAFQGMPAPEEVADNALTRFMGEWEAKLKEKAQAEEAAKQQALQAARGDHDKFFAERELKKETRMNSNRTQEQVFLEQLESDLESENPWERIVSLVDTQAEPSGPFKDTSRIKTMIIQLKNDPIHASA 204
            ++  +D   G     G P    +   AL  FM +WE +L+EK   EE A ++A Q A+ + D F+A++E   E +M+ NR++EQV LEQLE+DLES+NPWERI +LVD QAE  G   D SR+++++IQLKN+P+   A
Sbjct:  127 LDATQDMMGGAQMMMGEP---HMMRTALDDFMDKWEQELREKRAVEEQAAEEAKQKAKAELDHFYAQKEKTFEAKMSKNRSEEQVLLEQLEADLESDNPWERITNLVDLQAE--GDDVDKSRMRSILIQLKNEPLEVKA 260          
BLAST of jgi.p|Trimin1|351192 vs. uniprot
Match: A0A7R9VTD9_9STRA (Clathrin light chain n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VTD9_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 1.920e-20
Identity = 54/136 (39.71%), Postives = 84/136 (61.76%), Query Frame = 0
Query:   68 PAEDGSNGHMAFQGMPAPEEVADNALTRFMGEWEAKLKEKAQAEEAAKQQALQAARGDHDKFFAERELKKETRMNSNRTQEQVFLEQLESDLESENPWERIVSLVDTQAEPSGPFKDTSRIKTMIIQLKNDPIHAS 203
            P E G+    +    P PEE   + + ++  EW+  LKE+  AE AAK +A++AAR + +KF AER+ ++ETRM  NR  EQ  LE +E+DLE++N W+R+V LV+   +      D  R++ ++I LKN+P  A+
Sbjct:  102 PFEAGAAAEDSLLPEPEPEEKGPSPMQKWNDEWQVTLKERKDAENAAKAEAVEAARVELEKFQAERDARRETRMAKNRADEQDKLEAIEADLENDNSWQRVVKLVELTHDTVEGAADVHRMRDVMITLKNEPARAT 237          
BLAST of jgi.p|Trimin1|351192 vs. uniprot
Match: K0S5A2_THAOC (Clathrin light chain n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S5A2_THAOC)

HSP 1 Score: 92.4 bits (228), Expect = 1.270e-19
Identity = 55/139 (39.57%), Postives = 88/139 (63.31%), Query Frame = 0
Query:   69 AEDGSNGHMAFQGMPAPEEVAD---NALTRFMGEWEAKLKEKAQAEEAAKQQALQAARGDHDKFFAERELKKETRMNSNRTQEQVFLEQLESDLESENPWERIVSLVDTQAEPSGPFKDTSRIKTMIIQLKNDPIHASA 204
            A+D   G MA    PAP  +A    +A+ ++  EW+  L ++ + E A K   ++AAR D +KF AERE ++ETRM  NR+ EQ  LE +E+DLE++N W+R+V +++   + +    DT+R+K +++ LKN+P  ASA
Sbjct:   81 ADDDDGGLMA----PAPVSMAPPEPSAMQKWNEEWQTTLLQRKEEENALKASQVEAARADIEKFQAEREKRRETRMAKNRSDEQDKLEAIEADLENDNSWQRVVKMIELNQDSADGSADTNRMKDVLVLLKNEPDKASA 215          
BLAST of jgi.p|Trimin1|351192 vs. uniprot
Match: A0A7S2UWZ8_9STRA (Clathrin light chain n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWZ8_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 2.280e-19
Identity = 51/119 (42.86%), Postives = 74/119 (62.18%), Query Frame = 0
Query:   82 MPAPEEVADNALTRFMGEWEAKLKEKAQAEEAAKQQALQAARGDHDKFFAERELKKETRMNSNRTQEQVFLEQLESDLESENPWERIVSLVDTQAEPSGPFKDTSRIKTMIIQLKNDPI 200
            +  PE VA  AL  F  +W+ KL EKA+ E    Q+ +Q A+ + DKF+ E+ +++E+R + NR  EQ  LE+LE+DLE EN WER+ SLVD   +      D SR+  +I QLK +P+
Sbjct:   88 LEIPEPVARTALDDFEEQWKEKLAEKAELERQTTQETIQKAKQNLDKFYDEKRVQRESRQSKNRQLEQSMLEKLEADLECENAWERVSSLVDLTLDGGEDAPDQSRMVALITQLKREPL 206          
BLAST of jgi.p|Trimin1|351192 vs. uniprot
Match: A0A2D4BVD7_PYTIN (Clathrin light chain n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BVD7_PYTIN)

HSP 1 Score: 89.7 bits (221), Expect = 2.030e-18
Identity = 59/144 (40.97%), Postives = 83/144 (57.64%), Query Frame = 0
Query:   82 MPAPEEVADNALTRFMGEWEAKLKEKAQAEEAAKQQALQAARGDHDKFFAERELKKETRMNSNRTQEQVFLEQLESDLESENPWERIVSLVDTQA--------------------EPSGPFK-----DTSRIKTMIIQLKNDPI 200
            MPA EE  DN LT+FM ++EA++ +KAQ +E    +  + A+ D D+F  ER  KKE++  +NR QEQ  LE+L +DLESENPWER+VSLVD +                     EP    K     D SR++ + +QLK +P+
Sbjct:   91 MPAVEE--DNELTKFMRQYEAEIAQKAQEQEKVGVECKEKAKKDMDQFQTERSRKKESKQQANRVQEQATLEKLAADLESENPWERVVSLVDLEVNRKQKLAALNNKKDAKNKEPEPVKSSKKEDEEDLSRMRQLFVQLKAEPL 232          
BLAST of jgi.p|Trimin1|351192 vs. uniprot
Match: A0A7S2RJR1_9STRA (Clathrin light chain n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RJR1_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 6.650e-18
Identity = 50/131 (38.17%), Postives = 82/131 (62.60%), Query Frame = 0
Query:   77 MAFQGMPAPEEVADNALT---RFMGEWEAKLKEKAQAEEAAKQQALQAARGDHDKFFAERELKKETRMNSNRTQEQVFLEQLESDLESENPWERIVSLVDTQAEPSGPFKDTSRIKTMIIQLKNDPIHASA 204
            M    +P PE    +  T   ++  EW   L+E+  AE AAK + ++AA+ + ++F  ERE+K+ET+M +NR+ EQ  LE +E+DLE++N W+R+V +V+   + +    D SR+K ++I LKN+P  A A
Sbjct:   99 MTEDNLPEPEAAEPDETTPMAKWNQEWTVTLRERKDAENAAKGEHVEAAQAELERFQTEREVKRETKMTNNRSDEQEKLEAIEADLENDNSWQRVVKMVELNHDAAEGSLDVSRMKDVMIFLKNEPSRAIA 229          
BLAST of jgi.p|Trimin1|351192 vs. uniprot
Match: A0A812V5R7_SYMMI (Clathrin light chain n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812V5R7_SYMMI)

HSP 1 Score: 83.6 bits (205), Expect = 7.470e-17
Identity = 47/125 (37.60%), Postives = 79/125 (63.20%), Query Frame = 0
Query:   81 GMPAPEEVADNALTRFMGEWEAKLKEKAQAEEAAKQQALQAARGDHDKFFAERELKKETRMNSNRTQEQVFLEQLESDLESENPWERIVSLVDTQAE-PSGPFK-DTSRIKTMIIQLKNDPIHAS 203
            GMP PE   ++AL++F  EW  +L+EK + E+AA+++A   A  +   + A+R+ +   +   NR++EQV LEQLESDL+  N W+R+  L++   + P  P + D SR++ + I LKN+P+  +
Sbjct:   27 GMPEPE--VEDALSKFNREWNERLEEKKRKEDAAEEEAKATAAEELANYLAQRQTRMSAKKEVNRSEEQVLLEQLESDLDGANVWDRVSKLIEAGVDVPDDPDRADVSRMRKLFIHLKNEPLETT 149          
BLAST of jgi.p|Trimin1|351192 vs. uniprot
Match: A0A8K1CW16_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CW16_PYTOL)

HSP 1 Score: 84.0 bits (206), Expect = 2.820e-16
Identity = 56/144 (38.89%), Postives = 78/144 (54.17%), Query Frame = 0
Query:   82 MPAPEEVADNALTRFMGEWEAKLKEKAQAEEAAKQQALQAARGDHDKFFAERELKKETRMNSNRTQEQVFLEQLESDLESENPWERIVSLVDTQ--------------------AEPSGPFK-----DTSRIKTMIIQLKNDPI 200
            M  P    +N LT+FM ++E ++  KAQ +E    +  + A+ D ++F AER   KE++  SNR QEQ  LE+L  DLESENPWER+VSLVD +                    AE   P K     D SR++ + +QLK DP+
Sbjct:   81 MSVPVIEEENELTKFMRKYEGEIAAKAQEQEKVGVECKEKAKHDMEQFTAERSRIKESKQQSNRVQEQATLEKLALDLESENPWERVVSLVDLETNRKQKLAALNAKKDGKNKEAEAPKPVKKEEEEDVSRMRQLFVQLKADPL 224          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351192 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YIR5_9STRA9.610e-138100.00Clathrin light chain n=1 Tax=Tribonema minus TaxID... [more]
D7G9H3_ECTSI2.610e-3657.81Clathrin light chain n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A7S3Y6V3_HETAK6.130e-2544.60Clathrin light chain n=1 Tax=Heterosigma akashiwo ... [more]
A0A7R9VTD9_9STRA1.920e-2039.71Clathrin light chain n=1 Tax=Pseudictyota dubia Ta... [more]
K0S5A2_THAOC1.270e-1939.57Clathrin light chain n=1 Tax=Thalassiosira oceanic... [more]
A0A7S2UWZ8_9STRA2.280e-1942.86Clathrin light chain n=1 Tax=Fibrocapsa japonica T... [more]
A0A2D4BVD7_PYTIN2.030e-1840.97Clathrin light chain n=1 Tax=Pythium insidiosum Ta... [more]
A0A7S2RJR1_9STRA6.650e-1838.17Clathrin light chain n=1 Tax=Eucampia antarctica T... [more]
A0A812V5R7_SYMMI7.470e-1737.60Clathrin light chain n=1 Tax=Symbiodinium microadr... [more]
A0A8K1CW16_PYTOL2.820e-1638.89Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 97..125
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 107..149
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..94
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 121..143
NoneNo IPR availablePANTHERPTHR10639:SF7CLATHRIN LIGHT CHAINcoord: 54..200
IPR000996Clathrin light chainPFAMPF01086Clathrin_lg_chcoord: 90..199
e-value: 1.8E-18
score: 67.3
IPR000996Clathrin light chainPANTHERPTHR10639CLATHRIN LIGHT CHAINcoord: 54..200
IPR000996Clathrin light chainPROSITEPS00581CLATHRIN_LIGHT_CHN_2coord: 183..196

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_83contigContig_83:126866..130822 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351192mRNA_11945Tribonema minus UTEX_B_3156 mRNAContig_83 126699..130902 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|351192|estExt_Genemark1.C_Ctg_830009 ID=Trimin1|351192|estExt_Genemark1.C_Ctg_830009|Name=jgi.p|Trimin1|351192|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=205bp
MDNDSDFFGEDQQTPIDATADITPSAEGYTDFGGDYVGGGYKGGGAEDYQ
QQQDAGQYGSLDGDEMNPAEDGSNGHMAFQGMPAPEEVADNALTRFMGEW
EAKLKEKAQAEEAAKQQALQAARGDHDKFFAERELKKETRMNSNRTQEQV
FLEQLESDLESENPWERIVSLVDTQAEPSGPFKDTSRIKTMIIQLKNDPI
HASA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000996Clathrin_L-chain