Trimin1|351031|estExt_Genemark1.C_Ctg_780054 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|351031
Unique NameTrimin1|351031|estExt_Genemark1.C_Ctg_780054
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length382
Homology
BLAST of jgi.p|Trimin1|351031 vs. uniprot
Match: A0A835YL83_9STRA (Mis18 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL83_9STRA)

HSP 1 Score: 655 bits (1691), Expect = 4.460e-236
Identity = 381/381 (100.00%), Postives = 381/381 (100.00%), Query Frame = 0
Query:    1 MGVPRPPPLNVGGVGGGGDGGMLXXXXNGGIVRTPAHRSNHFAVRRPPVVFQCSQCSFILGHTTASEVLDSQKVKLGLQEFVQVEAAPGTSLHAVMTVSHAKYDEGSGFRQLACANAKCKSLVGRTYYSTPLHMDHLRGVYLLCAPAITSYELSAEHSEPQPNFNLSPRGPPLLNGASAAAAAPVHEGAGSGGEAQLAHATDMGDAEAAVALAGAAASAKAFQGESTSKRLQNHWAEATGLAAAAVANLATPSDDNCYTPRNSRASTTVKTEGPWHTSPRAAAAXXXXXXXXXXXXXXXXXXXXVDARLSSSAAERHNLKFASARSSSSHGLSTAGPSGGHTGSPVTAGYHRSGAAAXXXXXXXXXXSQPLSPIEPWTTVQ 381
            MGVPRPPPLNVGGVGGGGDGGMLXXXXNGGIVRTPAHRSNHFAVRRPPVVFQCSQCSFILGHTTASEVLDSQKVKLGLQEFVQVEAAPGTSLHAVMTVSHAKYDEGSGFRQLACANAKCKSLVGRTYYSTPLHMDHLRGVYLLCAPAITSYELSAEHSEPQPNFNLSPRGPPLLNGASAAAAAPVHEGAGSGGEAQLAHATDMGDAEAAVALAGAAASAKAFQGESTSKRLQNHWAEATGLAAAAVANLATPSDDNCYTPRNSRASTTVKTEGPWHTSPRAAAAXXXXXXXXXXXXXXXXXXXXVDARLSSSAAERHNLKFASARSSSSHGLSTAGPSGGHTGSPVTAGYHRSGAAAXXXXXXXXXXSQPLSPIEPWTTVQ
Sbjct:    1 MGVPRPPPLNVGGVGGGGDGGMLXXXXNGGIVRTPAHRSNHFAVRRPPVVFQCSQCSFILGHTTASEVLDSQKVKLGLQEFVQVEAAPGTSLHAVMTVSHAKYDEGSGFRQLACANAKCKSLVGRTYYSTPLHMDHLRGVYLLCAPAITSYELSAEHSEPQPNFNLSPRGPPLLNGASAAAAAPVHEGAGSGGEAQLAHATDMGDAEAAVALAGAAASAKAFQGESTSKRLQNHWAEATGLAAAAVANLATPSDDNCYTPRNSRASTTVKTEGPWHTSPRAAAAXXXXXXXXXXXXXXXXXXXXVDARLSSSAAERHNLKFASARSSSSHGLSTAGPSGGHTGSPVTAGYHRSGAAAXXXXXXXXXXSQPLSPIEPWTTVQ 381          
BLAST of jgi.p|Trimin1|351031 vs. uniprot
Match: A0A5D6YEM6_9STRA (Mis18 domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YEM6_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 3.120e-7
Identity = 38/108 (35.19%), Postives = 58/108 (53.70%), Query Frame = 0
Query:   48 PVVFQCSQCSFILGHTTASEVLDSQKVKLGLQEFVQVE--AAPGTSLHAVMTVSHAKYDEGSGFRQLACANAKCKSLVGRTYYSTPLHMDHLRGVYLLCAPAITSYEL 153
            PVVFQC  C  + G + A    +++ + + L     V   A P TS            D GS F++L CA  +C++++GR+Y +TPL +D LRG++     AI SY+L
Sbjct:  170 PVVFQCGTCRSVFGDSYAFVGSNAELLLVTLSAVTNVTTGAEPQTSRDGA--------DAGSSFQELLCA--QCQTVLGRSYLTTPLALDALRGLFSFATTAIASYQL 267          
BLAST of jgi.p|Trimin1|351031 vs. uniprot
Match: A0A8B6F7W3_MYTGA (Kinetochore protein Mis18 n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6F7W3_MYTGA)

HSP 1 Score: 62.0 bits (149), Expect = 4.490e-7
Identity = 38/107 (35.51%), Postives = 54/107 (50.47%), Query Frame = 0
Query:   49 VVFQCSQCSFILGHTTASEVLDSQKVKLGLQEFVQVEAAPGTSLHAVMTVSHAKYDEGSGFRQLACANAKCKSLVGRTYYSTPLHMDHLRGVYLLCAPAITSYELSA 155
            +V QCSQCS I+G TTA    D     + L+      A+    +  V+  S    D GS F  L C    C   +GR Y +TP  +DHLRG++ L    +TSY++ +
Sbjct:   27 LVLQCSQCSSIVGDTTAWAFADDVLRTVSLKN-----ASEKVLITEVLDTSKNGTDFGSAFNVLKCE--VCNEEIGRMYRTTPTQLDHLRGLFSLFIDKLTSYQVGS 126          
BLAST of jgi.p|Trimin1|351031 vs. uniprot
Match: A0A6J8BKV4_MYTCO (Mis18 domain-containing protein n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8BKV4_MYTCO)

HSP 1 Score: 62.0 bits (149), Expect = 4.490e-7
Identity = 38/107 (35.51%), Postives = 54/107 (50.47%), Query Frame = 0
Query:   49 VVFQCSQCSFILGHTTASEVLDSQKVKLGLQEFVQVEAAPGTSLHAVMTVSHAKYDEGSGFRQLACANAKCKSLVGRTYYSTPLHMDHLRGVYLLCAPAITSYELSA 155
            +V QCSQCS I+G TTA    D     + L+      A+    +  V+  S    D GS F  L C    C   +GR Y +TP  +DHLRG++ L    +TSY++ +
Sbjct:   27 LVLQCSQCSSIVGDTTAWAFADDVLRTVSLKN-----ASEKVLITEVLETSKNGTDFGSAFNVLKCE--VCNEEIGRMYRTTPTQLDHLRGLFSLFIDKLTSYQVGS 126          
BLAST of jgi.p|Trimin1|351031 vs. uniprot
Match: M9M608_PSEA3 (Mis18 domain-containing protein n=3 Tax=Moesziomyces TaxID=63261 RepID=M9M608_PSEA3)

HSP 1 Score: 59.7 bits (143), Expect = 4.060e-6
Identity = 38/108 (35.19%), Postives = 54/108 (50.00%), Query Frame = 0
Query:   48 PVVFQCSQCSFILGHTTASEVLDSQKVKLGLQEFVQVEAAPGTSLHAVMTVSHAKYDEGSGFRQLACANAKCKSLVGRTYYSTPLHMDHLRGVYLLCAPAITSYELSA 155
            P+VFQC QC  +LG + A    D++   + L +   V +   T      T +    D G+ F  L C    CK+ VGRTY +TP H+D LR    L   A+T+Y L +
Sbjct:  175 PLVFQCRQCFRLLGDSFAFVATDTELGYVVLSDVSDVVSQDTT----FQTSTQPGKDMGATFALLRCGG--CKATVGRTYRTTPRHLDDLRDCASLDVDAVTTYRLGS 276          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351031 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A835YL83_9STRA4.460e-236100.00Mis18 domain-containing protein n=1 Tax=Tribonema ... [more]
A0A5D6YEM6_9STRA3.120e-735.19Mis18 domain-containing protein n=1 Tax=Pythium br... [more]
A0A8B6F7W3_MYTGA4.490e-735.51Kinetochore protein Mis18 n=1 Tax=Mytilus gallopro... [more]
A0A6J8BKV4_MYTCO4.490e-735.51Mis18 domain-containing protein n=1 Tax=Mytilus co... [more]
M9M608_PSEA34.060e-635.19Mis18 domain-containing protein n=3 Tax=Moesziomyc... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004910Yippee/Mis18/CereblonPFAMPF03226Yippee-Mis18coord: 49..161
e-value: 4.2E-12
score: 46.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 321..341
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 159..200
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 257..274
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 295..381
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 257..278
IPR034752Mis18 domainPROSITEPS51793MIS18coord: 48..153
score: 24.472347

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_78contigContig_78:534737..539230 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351031mRNA_12553Tribonema minus UTEX_B_3156 mRNAContig_78 534443..539230 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|351031|estExt_Genemark1.C_Ctg_780054 ID=Trimin1|351031|estExt_Genemark1.C_Ctg_780054|Name=jgi.p|Trimin1|351031|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=382bp
MGVPRPPPLNVGGVGGGGDGGMLGVGGNGGIVRTPAHRSNHFAVRRPPVV
FQCSQCSFILGHTTASEVLDSQKVKLGLQEFVQVEAAPGTSLHAVMTVSH
AKYDEGSGFRQLACANAKCKSLVGRTYYSTPLHMDHLRGVYLLCAPAITS
YELSAEHSEPQPNFNLSPRGPPLLNGASAAAAAPVHEGAGSGGEAQLAHA
TDMGDAEAAVALAGAAASAKAFQGESTSKRLQNHWAEATGLAAAAVANLA
TPSDDNCYTPRNSRASTTVKTEGPWHTSPRAAAAAAAAAAVPAPVAAPPP
LPPPVDARLSSSAAERHNLKFASARSSSSHGLSTAGPSGGHTGSPVTAGY
HRSGAAAAAAAAAAAAASQPLSPIEPWTTVQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004910Yippee/Mis18/Cereblon
IPR034752Mis18