Trimin1|350977|estExt_Genemark1.C_Ctg_770007 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|350977
Unique NameTrimin1|350977|estExt_Genemark1.C_Ctg_770007
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length556
Homology
BLAST of jgi.p|Trimin1|350977 vs. uniprot
Match: A0A836C949_9STRA (mRNA export factor GLE1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C949_9STRA)

HSP 1 Score: 1075 bits (2779), Expect = 0.000e+0
Identity = 555/555 (100.00%), Postives = 555/555 (100.00%), Query Frame = 0
Query:    1 MSTAVADAHEHNLGSTSDALRADVSSEEDTETLHITSARNDQQPRRLSSGNGFSVEGFEAWSEEKDRTAAVAVASKTGRRRATADLLLQFRALHVDFEEKLKAQQDEQEWELEALRHQRRTAMQNLSGEVRLALSTERQAKDQLITSAREMLGPSFPLVPHTGEPSAEALRHELDVDALLSMLSSANPVWIRFKGDKEVKEVTLRADRVSIYLKKLREHVEQLQLQQAQDLLDNHPLEAKAQKQAAEDQEKQAKARASKDPGIKRSRMNFRKLFSGAFNKVGNDPEQIKQAVKDIFEKGHGELKQAEADGWGPDATTFYIYSVAEQIVKRATGDQFNASDYEQAFQISCVTVDLCMLIGPQLWTQLIAMIQRDCPMLVPTVVQDSSGMSDDQWKAATGFRADDTVDTYVKRCKNLTILMAAIAVTPPVTHNMATAAGAAHPWPMKQAWVWLARLLNQIQVFAQGSDTVKMPMATGPVLESFIKIAGHDMQSAFGKQFTKLLHTISTEVKGRLLANEDVPHLLDAVLDETEKNGWRVAAPKGRKQLERYRTWGQTD 555
            MSTAVADAHEHNLGSTSDALRADVSSEEDTETLHITSARNDQQPRRLSSGNGFSVEGFEAWSEEKDRTAAVAVASKTGRRRATADLLLQFRALHVDFEEKLKAQQDEQEWELEALRHQRRTAMQNLSGEVRLALSTERQAKDQLITSAREMLGPSFPLVPHTGEPSAEALRHELDVDALLSMLSSANPVWIRFKGDKEVKEVTLRADRVSIYLKKLREHVEQLQLQQAQDLLDNHPLEAKAQKQAAEDQEKQAKARASKDPGIKRSRMNFRKLFSGAFNKVGNDPEQIKQAVKDIFEKGHGELKQAEADGWGPDATTFYIYSVAEQIVKRATGDQFNASDYEQAFQISCVTVDLCMLIGPQLWTQLIAMIQRDCPMLVPTVVQDSSGMSDDQWKAATGFRADDTVDTYVKRCKNLTILMAAIAVTPPVTHNMATAAGAAHPWPMKQAWVWLARLLNQIQVFAQGSDTVKMPMATGPVLESFIKIAGHDMQSAFGKQFTKLLHTISTEVKGRLLANEDVPHLLDAVLDETEKNGWRVAAPKGRKQLERYRTWGQTD
Sbjct:    1 MSTAVADAHEHNLGSTSDALRADVSSEEDTETLHITSARNDQQPRRLSSGNGFSVEGFEAWSEEKDRTAAVAVASKTGRRRATADLLLQFRALHVDFEEKLKAQQDEQEWELEALRHQRRTAMQNLSGEVRLALSTERQAKDQLITSAREMLGPSFPLVPHTGEPSAEALRHELDVDALLSMLSSANPVWIRFKGDKEVKEVTLRADRVSIYLKKLREHVEQLQLQQAQDLLDNHPLEAKAQKQAAEDQEKQAKARASKDPGIKRSRMNFRKLFSGAFNKVGNDPEQIKQAVKDIFEKGHGELKQAEADGWGPDATTFYIYSVAEQIVKRATGDQFNASDYEQAFQISCVTVDLCMLIGPQLWTQLIAMIQRDCPMLVPTVVQDSSGMSDDQWKAATGFRADDTVDTYVKRCKNLTILMAAIAVTPPVTHNMATAAGAAHPWPMKQAWVWLARLLNQIQVFAQGSDTVKMPMATGPVLESFIKIAGHDMQSAFGKQFTKLLHTISTEVKGRLLANEDVPHLLDAVLDETEKNGWRVAAPKGRKQLERYRTWGQTD 555          
BLAST of jgi.p|Trimin1|350977 vs. uniprot
Match: A0A482WSV3_LAOST (mRNA export factor GLE1 n=1 Tax=Laodelphax striatellus TaxID=195883 RepID=A0A482WSV3_LAOST)

HSP 1 Score: 78.6 bits (192), Expect = 1.390e-11
Identity = 57/204 (27.94%), Postives = 99/204 (48.53%), Query Frame = 0
Query:  313 PDATTFYIYSVAEQIVKRATGDQFNASDYEQAFQISCVTVDLCMLIGPQLWTQLIAMIQRDCPMLVPTVVQDSSGMSDDQWKAATGFRADD----TVDTYVKRCKNLTILMAAIAVTPPVTHNMATAAGAAHPWPMKQAWVWLARLLNQIQVFAQGSDTVKMPMATGPVLESFIKIAGHDMQSAFGKQFTKLLHTISTEVKGRL 512
            P    F    +A++ V +  GDQ  +S  E AF I+ + V L     P+    L+A  QR+CP L+P ++    G SD+++    G++  D    + D ++KR      L AA+ +T P     +      HP  +K+ W WLA +LN ++     S T+ + M         + +AG ++   +G QF K+LH + +++  R+
Sbjct:  461 PLGIKFCTNIMAKKFVNQ--GDQTVSSKPEAAFAIAGIAVSLWHEF-PEFGALLLAHFQRECPYLIPALMPQLEGQSDEEYYKVLGYQYVDGKVESQDKFLKRMSGFVRLYAALIITNPRYRGKSP-----HPLGLKEGWRWLAAILN-LEPRCDLSATLILDM---------LDVAGSELHRCYGVQFQKILHLLCSDILPRI 646          
BLAST of jgi.p|Trimin1|350977 vs. uniprot
Match: UPI00193E5957 (nucleoporin GLE1 isoform X2 n=2 Tax=Nilaparvata lugens TaxID=108931 RepID=UPI00193E5957)

HSP 1 Score: 68.6 bits (166), Expect = 1.950e-8
Identity = 54/204 (26.47%), Postives = 95/204 (46.57%), Query Frame = 0
Query:  313 PDATTFYIYSVAEQIVKRATGDQFNASDYEQAFQISCVTVDLCMLIGPQLWTQLIAMIQRDCPMLVPTVVQDSSGMSDDQWKAATGFRADD----TVDTYVKRCKNLTILMAAIAVTPPVTHNMATAAGAAHPWPMKQAWVWLARLLNQIQVFAQGSDTVKMPMATGPVLESFIKIAGHDMQSAFGKQFTKLLHTISTEVKGRL 512
            P    F    +A++ V +  GDQ  +S  E AF I+ + V L     P     L A  QR+CP L+P ++    G SD+++     ++  D    + D ++KR      L AA+ ++ P +          HP  + + W WLA ++N ++     S T+ + M         + +AG ++   +G QF K+LH + +E+  R+
Sbjct:  464 PLGIKFCTNLMAKKFVSQ--GDQTVSSKPEAAFAIAGIAVSLWYEF-PDFGELLKAHFQRECPYLIPALMPQLEGQSDEEYYKVLAYQYIDGKVESQDKFLKRMSGFMKLYAAMIISKPRSRPRPD-----HPLGLSEGWRWLAAIMN-LEPRCDISATLILIM---------LDVAGSELLRCYGAQFRKILHLLCSEILPRI 649          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|350977 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A836C949_9STRA0.000e+0100.00mRNA export factor GLE1 n=1 Tax=Tribonema minus Ta... [more]
A0A482WSV3_LAOST1.390e-1127.94mRNA export factor GLE1 n=1 Tax=Laodelphax striate... [more]
UPI00193E59571.950e-826.47nucleoporin GLE1 isoform X2 n=2 Tax=Nilaparvata lu... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 98..118
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 234..261
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 36..50
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..51
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 236..261
IPR038506GLE1-like superfamilyGENE3D1.25.40.510coord: 237..535
e-value: 2.2E-37
score: 130.5
IPR012476mRNA export factor GLE1-likePFAMPF07817GLE1coord: 250..504
e-value: 2.4E-28
score: 99.1
IPR012476mRNA export factor GLE1-likePANTHERPTHR12960GLE-1-RELATEDcoord: 94..526

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_77contigContig_77:49368..62682 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350977mRNA_12441Tribonema minus UTEX_B_3156 mRNAContig_77 49368..62955 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|350977|estExt_Genemark1.C_Ctg_770007 ID=Trimin1|350977|estExt_Genemark1.C_Ctg_770007|Name=jgi.p|Trimin1|350977|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=556bp
MSTAVADAHEHNLGSTSDALRADVSSEEDTETLHITSARNDQQPRRLSSG
NGFSVEGFEAWSEEKDRTAAVAVASKTGRRRATADLLLQFRALHVDFEEK
LKAQQDEQEWELEALRHQRRTAMQNLSGEVRLALSTERQAKDQLITSARE
MLGPSFPLVPHTGEPSAEALRHELDVDALLSMLSSANPVWIRFKGDKEVK
EVTLRADRVSIYLKKLREHVEQLQLQQAQDLLDNHPLEAKAQKQAAEDQE
KQAKARASKDPGIKRSRMNFRKLFSGAFNKVGNDPEQIKQAVKDIFEKGH
GELKQAEADGWGPDATTFYIYSVAEQIVKRATGDQFNASDYEQAFQISCV
TVDLCMLIGPQLWTQLIAMIQRDCPMLVPTVVQDSSGMSDDQWKAATGFR
ADDTVDTYVKRCKNLTILMAAIAVTPPVTHNMATAAGAAHPWPMKQAWVW
LARLLNQIQVFAQGSDTVKMPMATGPVLESFIKIAGHDMQSAFGKQFTKL
LHTISTEVKGRLLANEDVPHLLDAVLDETEKNGWRVAAPKGRKQLERYRT
WGQTD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR038506GLE1-like_sf
IPR012476GLE1