Trimin1|350905|estExt_Genemark1.C_Ctg_750043 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|350905
Unique Name	Trimin1\|350905\|estExt_Genemark1.C_Ctg_750043
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	660

Homology

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BLAST of jgi.p|Trimin1|350905 vs. uniprot
Match: A0A835YK32_9STRA (DUF2439 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK32_9STRA)

HSP 1 Score: 959 bits (2480), Expect = 0.000e+0
Identity = 659/659 (100.00%), Postives = 659/659 (100.00%), Query Frame = 0

Query:    1 MQAPNGERQVLRCLFTSQLTKKRKTWQDGAVRCCAKRLSVTLYKWSDTLGVTEKTLGESFLNAAEFNAFVTQKEPELEMEKYLVTLEGVTENTYTSNGDSQQSSEGGGAAKKPKLKGWKAPTKVTVPARPSDDDVYERLRQQXXXXXXXXXXXXXXGYSGGMQQRAGAQAAVGNGRCAGAISNGFGRLSSLWDDEGADRTPDDYWQXXXXXXXXXXXXXXXXXXWXXXXXPWQPHLAPDQRRRVSEADVHRSGDGFVEAYHMEQXXXXXXXQGGQAMRPCPGAPADACYTPRDGNVSTSGQLWPHDALSPQAAARAGGYGSRQYADAPPQQPPPLQRGLQPEGVARGAMSQQQQYGAYAAYSQQDEDSGGGFTLDDGSIFDLLESQGAGAAQPAVLSGSSGSGGAERVYGDGGGAAAGRAGWLGQHVHTPPGGRADSGSEGDASASVGWSGRSSVASALLSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGSPRSATELLSLFGVQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGFGDCVPPPRAXXXQPAALHRXXXXXXXXXXXXXQGRWTCACGVQCSAALARCPVCSKLPPGASGGSGDAERPPQMSQCSAAGSSLQLDLGSSDDETS 659
            MQAPNGERQVLRCLFTSQLTKKRKTWQDGAVRCCAKRLSVTLYKWSDTLGVTEKTLGESFLNAAEFNAFVTQKEPELEMEKYLVTLEGVTENTYTSNGDSQQSSEGGGAAKKPKLKGWKAPTKVTVPARPSDDDVYERLRQQXXXXXXXXXXXXXXGYSGGMQQRAGAQAAVGNGRCAGAISNGFGRLSSLWDDEGADRTPDDYWQXXXXXXXXXXXXXXXXXXWXXXXXPWQPHLAPDQRRRVSEADVHRSGDGFVEAYHMEQXXXXXXXQGGQAMRPCPGAPADACYTPRDGNVSTSGQLWPHDALSPQAAARAGGYGSRQYADAPPQQPPPLQRGLQPEGVARGAMSQQQQYGAYAAYSQQDEDSGGGFTLDDGSIFDLLESQGAGAAQPAVLSGSSGSGGAERVYGDGGGAAAGRAGWLGQHVHTPPGGRADSGSEGDASASVGWSGRSSVASALLSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGSPRSATELLSLFGVQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGFGDCVPPPRAXXXQPAALHRXXXXXXXXXXXXXQGRWTCACGVQCSAALARCPVCSKLPPGASGGSGDAERPPQMSQCSAAGSSLQLDLGSSDDETS
Sbjct:    1 MQAPNGERQVLRCLFTSQLTKKRKTWQDGAVRCCAKRLSVTLYKWSDTLGVTEKTLGESFLNAAEFNAFVTQKEPELEMEKYLVTLEGVTENTYTSNGDSQQSSEGGGAAKKPKLKGWKAPTKVTVPARPSDDDVYERLRQQXXXXXXXXXXXXXXGYSGGMQQRAGAQAAVGNGRCAGAISNGFGRLSSLWDDEGADRTPDDYWQXXXXXXXXXXXXXXXXXXWXXXXXPWQPHLAPDQRRRVSEADVHRSGDGFVEAYHMEQXXXXXXXQGGQAMRPCPGAPADACYTPRDGNVSTSGQLWPHDALSPQAAARAGGYGSRQYADAPPQQPPPLQRGLQPEGVARGAMSQQQQYGAYAAYSQQDEDSGGGFTLDDGSIFDLLESQGAGAAQPAVLSGSSGSGGAERVYGDGGGAAAGRAGWLGQHVHTPPGGRADSGSEGDASASVGWSGRSSVASALLSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGSPRSATELLSLFGVQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGFGDCVPPPRAXXXQPAALHRXXXXXXXXXXXXXQGRWTCACGVQCSAALARCPVCSKLPPGASGGSGDAERPPQMSQCSAAGSSLQLDLGSSDDETS 659

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BLAST of jgi.p|Trimin1|350905 vs. uniprot
Match: A0A6H5JZC9_9PHAE (RanBP2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZC9_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 5.170e-22
Identity = 50/78 (64.10%), Postives = 64/78 (82.05%), Query Frame = 0

Query:   12 RCLFTSQLTKKRKTWQDGAVRCCAKRLSVTLYKWSDTLGVTEKTLGESFLNAAEFNAFVTQKEPELEMEKYLVTLEGV 89
            RC++T+Q TKKRKTW DGAV+CC KR  V+LY+WS+ LGVTEK LGE +L   ++ AF+TQ EPELEME Y+V+L+GV
Sbjct:  144 RCMYTNQKTKKRKTWSDGAVKCCPKRQRVSLYRWSEALGVTEKLLGEVYLTVPQYEAFITQGEPELEMELYIVSLDGV 221

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BLAST of jgi.p|Trimin1|350905 vs. uniprot
Match: D8LRG4_ECTSI (RanBP2-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRG4_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 3.770e-20
Identity = 47/71 (66.20%), Postives = 58/71 (81.69%), Query Frame = 0

Query:   10 VLRCLFTSQLTKKRKTWQDGAVRCCAKRLSVTLYKWSDTLGVTEKTLGESFLNAAEFNAFVTQKEPELEME 80
            VLRC++T+Q TKKRKTW DGAV+CC KR  V+LY+WS+ LGVTEK LGE +L   ++ AF+TQ EPELEME
Sbjct:   86 VLRCMYTNQKTKKRKTWSDGAVKCCPKRQRVSLYRWSEALGVTEKLLGEVYLTVPQYEAFITQGEPELEME 156

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|350905 vs. uniprot

BLAST of jgi.p|Trimin1|350905 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
A0A835YK32_9STRA	0.000e+0	100.00	DUF2439 domain-containing protein n=1 Tax=Tribonem...	[more]
A0A6H5JZC9_9PHAE	5.170e-22	64.10	RanBP2-type domain-containing protein n=1 Tax=Ecto...	[more]
D8LRG4_ECTSI	3.770e-20	66.20	RanBP2-type domain-containing protein n=1 Tax=Ecto...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 208..228
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 632..659
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 239..257
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 93..140
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 202..234
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 621..659
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 93..107
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 307..351
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 189..273
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 560..591
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 506..538
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 506..523
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 420..446
IPR018838	Domain of unknown function DUF2439	PFAM	PF10382	DUF2439	coord: 12..93 e-value: 1.1E-10 score: 41.6

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_75	contig	Contig_75:300731..303674 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|350905	mRNA_7628	Tribonema minus UTEX_B_3156	mRNA	Contig_75 300731..303760 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|350905|estExt_Genemark1.C_Ctg_750043 ID=Trimin1|350905|estExt_Genemark1.C_Ctg_750043|Name=jgi.p|Trimin1|350905|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=660bp
MQAPNGERQVLRCLFTSQLTKKRKTWQDGAVRCCAKRLSVTLYKWSDTLG
VTEKTLGESFLNAAEFNAFVTQKEPELEMEKYLVTLEGVTENTYTSNGDS
QQSSEGGGAAKKPKLKGWKAPTKVTVPARPSDDDVYERLRQQEQSAFAAA
AAGGRGGYSGGMQQRAGAQAAVGNGRCAGAISNGFGRLSSLWDDEGADRT
PDDYWQQQQQQQQQQQQQQQQQQDWQQQQPPWQPHLAPDQRRRVSEADVH
RSGDGFVEAYHMEQQQQQQQWQGGQAMRPCPGAPADACYTPRDGNVSTSG
QLWPHDALSPQAAARAGGYGSRQYADAPPQQPPPLQRGLQPEGVARGAMS
QQQQYGAYAAYSQQDEDSGGGFTLDDGSIFDLLESQGAGAAQPAVLSGSS
GSGGAERVYGDGGGAAAGRAGWLGQHVHTPPGGRADSGSEGDASASVGWS
GRSSVASALLSGAAASQQHSAAAPAAAARGGGAPPAGAAAAAAAAAGSPR
SATELLSLFGVQRSRSTGTPPSDSRGAGGGGAAWQASAAARITSDRAARA
ASSQLGMQGGRGFGDCVPPPRAAAAQPAALHRHQQQQQQQQQQRQQGRWT
CACGVQCSAALARCPVCSKLPPGASGGSGDAERPPQMSQCSAAGSSLQLD
LGSSDDETS*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR018838	DUF2439