Trimin1|350684|estExt_Genemark1.C_Ctg_680102 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|350684
Unique Name	Trimin1\|350684\|estExt_Genemark1.C_Ctg_680102
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	521

Homology

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BLAST of jgi.p|Trimin1|350684 vs. uniprot
Match: A0A835YNE4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNE4_9STRA)

HSP 1 Score: 847 bits (2187), Expect = 5.700e-307
Identity = 520/520 (100.00%), Postives = 520/520 (100.00%), Query Frame = 0

Query:    1 MEAAAAEDVSHAVAVVPLEDELALICSFEVAFIVNGSSSGGDTPIASLTRAMVVDRRAQQDHNRQRGPWLGGAKNVMKPAGFAETSAEAHAGMVKEGVLALAASVDQPGLACPYEVIRKVRRDPEAEDNEGFCDVTLKKKQGDFTVVLAILQLKRASCSEALALATLNMCRLSRVNRTVVQQRDNVVRNCRRQAHAPWLEAQLSDASALRERVTRDLVHAFVPVLNAKKARIRELAAERDALEEQLAEATAQHGSAAGGDSDAGQATDASGGXXXXKGGDDYDGVGGRGGAQKGEGGGVLAASKPEERXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGGRGDSQGSSSVGLASVLAPARGTIEMSGDALLAQLRFKQEAKPAFTGGGGAGVSDYMMPMPDESERKPVKMMRGRGKRPPPASQSSAAVVVKPEPMEASSPVAAQRGSAAHTDGAAAAXPXXXXXXXXXXXXXXXXXXXXSTEPGSRGGTHHSHPKSAQQTNGAPKKRKSRLGGWMDDSDSE 520
            MEAAAAEDVSHAVAVVPLEDELALICSFEVAFIVNGSSSGGDTPIASLTRAMVVDRRAQQDHNRQRGPWLGGAKNVMKPAGFAETSAEAHAGMVKEGVLALAASVDQPGLACPYEVIRKVRRDPEAEDNEGFCDVTLKKKQGDFTVVLAILQLKRASCSEALALATLNMCRLSRVNRTVVQQRDNVVRNCRRQAHAPWLEAQLSDASALRERVTRDLVHAFVPVLNAKKARIRELAAERDALEEQLAEATAQHGSAAGGDSDAGQATDASGGXXXXKGGDDYDGVGGRGGAQKGEGGGVLAASKPEERXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGGRGDSQGSSSVGLASVLAPARGTIEMSGDALLAQLRFKQEAKPAFTGGGGAGVSDYMMPMPDESERKPVKMMRGRGKRPPPASQSSAAVVVKPEPMEASSPVAAQRGSAAHTDGAAAAXPXXXXXXXXXXXXXXXXXXXXSTEPGSRGGTHHSHPKSAQQTNGAPKKRKSRLGGWMDDSDSE
Sbjct:    1 MEAAAAEDVSHAVAVVPLEDELALICSFEVAFIVNGSSSGGDTPIASLTRAMVVDRRAQQDHNRQRGPWLGGAKNVMKPAGFAETSAEAHAGMVKEGVLALAASVDQPGLACPYEVIRKVRRDPEAEDNEGFCDVTLKKKQGDFTVVLAILQLKRASCSEALALATLNMCRLSRVNRTVVQQRDNVVRNCRRQAHAPWLEAQLSDASALRERVTRDLVHAFVPVLNAKKARIRELAAERDALEEQLAEATAQHGSAAGGDSDAGQATDASGGXXXXKGGDDYDGVGGRGGAQKGEGGGVLAASKPEERXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGGRGDSQGSSSVGLASVLAPARGTIEMSGDALLAQLRFKQEAKPAFTGGGGAGVSDYMMPMPDESERKPVKMMRGRGKRPPPASQSSAAVVVKPEPMEASSPVAAQRGSAAHTDGAAAAXPXXXXXXXXXXXXXXXXXXXXSTEPGSRGGTHHSHPKSAQQTNGAPKKRKSRLGGWMDDSDSE 520

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|350684 vs. uniprot

BLAST of jgi.p|Trimin1|350684 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835YNE4_9STRA	5.700e-307	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 225..252
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 244..345
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 384..520
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 468..504
None	No IPR available	SUPERFAMILY	58022	XRCC4, C-terminal oligomerization domain	coord: 199..244
IPR014751	DNA repair protein XRCC4-like, C-terminal	GENE3D	1.20.5.370		coord: 165..254 e-value: 5.9E-5 score: 25.0
IPR010585	DNA repair protein XRCC4	PFAM	PF06632	XRCC4	coord: 130..272 e-value: 1.9E-6 score: 27.0

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_68	contig	Contig_68:687138..690960 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|350684	mRNA_8544	Tribonema minus UTEX_B_3156	mRNA	Contig_68 687138..691903 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|350684|estExt_Genemark1.C_Ctg_680102 ID=Trimin1|350684|estExt_Genemark1.C_Ctg_680102|Name=jgi.p|Trimin1|350684|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=521bp
MEAAAAEDVSHAVAVVPLEDELALICSFEVAFIVNGSSSGGDTPIASLTR
AMVVDRRAQQDHNRQRGPWLGGAKNVMKPAGFAETSAEAHAGMVKEGVLA
LAASVDQPGLACPYEVIRKVRRDPEAEDNEGFCDVTLKKKQGDFTVVLAI
LQLKRASCSEALALATLNMCRLSRVNRTVVQQRDNVVRNCRRQAHAPWLE
AQLSDASALRERVTRDLVHAFVPVLNAKKARIRELAAERDALEEQLAEAT
AQHGSAAGGDSDAGQATDASGGASDAKGGDDYDGVGGRGGAQKGEGGGVL
AASKPEERERGKTPAPAPAPKVKEEGYGKGGAGAGGLGGRGDSQGSSSVG
LASVLAPARGTIEMSGDALLAQLRFKQEAKPAFTGGGGAGVSDYMMPMPD
ESERKPVKMMRGRGKRPPPASQSSAAVVVKPEPMEASSPVAAQRGSAAHT
DGAAAAAPAAHSGGVSGSGSGGRGSGTASTEPGSRGGTHHSHPKSAQQTN
GAPKKRKSRLGGWMDDSDSE*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR014751	XRCC4-like_C
IPR010585	DNA_repair_prot_XRCC4