Trimin1|350564|estExt_Genemark1.C_Ctg_660055 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|350564
Unique Name	Trimin1\|350564\|estExt_Genemark1.C_Ctg_660055
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	532

Homology

[Close]

BLAST of jgi.p|Trimin1|350564 vs. uniprot
Match: A0A835YWD8_9STRA (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWD8_9STRA)

HSP 1 Score: 833 bits (2153), Expect = 1.990e-301
Identity = 531/531 (100.00%), Postives = 531/531 (100.00%), Query Frame = 0

Query:    1 MSDVFVRSEDTVERACDNCYIHKRRCTGDGVPPCAACVQKGLDCSYSPSYDRAPARTVHLCDRTCASMTPHRTRRCLPPSALAPXXXXXXXXXXRAVRTSRPXXXXTLDADADDEAALPLKRPSTXXXXXXXXXXXXTRPPLPPGAGGWDAAAWGCGSDQLAAPLTHVPRLSPSSATGLLGLREHHFLAAFVSAYAATLIQYEAEFQPAIVEIMRAAGXXXXXXXXXXXSGRGDLPLADAAPPSAPQASLCSLWTAISVGAGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRRFGAMVQGASVYAPEVRGYLRCAERAAHAAHQREGPTLTTLHAFMMLTNVYVMLEDFNKLGVYLETTTDIAKSNPNPSPAHESETAGGAPHPSVSRAPFVYISPHARDXXXXXXXXXXXXXXSIARAHARALARLHDRDELHATVSVPPPLQENTWFLLESSAADSQPGRGAALRLAPGLIARSGHNTHLEASLLNAVADCELYGSEGAHTLLSGRHLRG 531
            MSDVFVRSEDTVERACDNCYIHKRRCTGDGVPPCAACVQKGLDCSYSPSYDRAPARTVHLCDRTCASMTPHRTRRCLPPSALAPXXXXXXXXXXRAVRTSRPXXXXTLDADADDEAALPLKRPSTXXXXXXXXXXXXTRPPLPPGAGGWDAAAWGCGSDQLAAPLTHVPRLSPSSATGLLGLREHHFLAAFVSAYAATLIQYEAEFQPAIVEIMRAAGXXXXXXXXXXXSGRGDLPLADAAPPSAPQASLCSLWTAISVGAGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRRFGAMVQGASVYAPEVRGYLRCAERAAHAAHQREGPTLTTLHAFMMLTNVYVMLEDFNKLGVYLETTTDIAKSNPNPSPAHESETAGGAPHPSVSRAPFVYISPHARDXXXXXXXXXXXXXXSIARAHARALARLHDRDELHATVSVPPPLQENTWFLLESSAADSQPGRGAALRLAPGLIARSGHNTHLEASLLNAVADCELYGSEGAHTLLSGRHLRG
Sbjct:    1 MSDVFVRSEDTVERACDNCYIHKRRCTGDGVPPCAACVQKGLDCSYSPSYDRAPARTVHLCDRTCASMTPHRTRRCLPPSALAPXXXXXXXXXXRAVRTSRPXXXXTLDADADDEAALPLKRPSTXXXXXXXXXXXXTRPPLPPGAGGWDAAAWGCGSDQLAAPLTHVPRLSPSSATGLLGLREHHFLAAFVSAYAATLIQYEAEFQPAIVEIMRAAGXXXXXXXXXXXSGRGDLPLADAAPPSAPQASLCSLWTAISVGAGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRRFGAMVQGASVYAPEVRGYLRCAERAAHAAHQREGPTLTTLHAFMMLTNVYVMLEDFNKLGVYLETTTDIAKSNPNPSPAHESETAGGAPHPSVSRAPFVYISPHARDXXXXXXXXXXXXXXSIARAHARALARLHDRDELHATVSVPPPLQENTWFLLESSAADSQPGRGAALRLAPGLIARSGHNTHLEASLLNAVADCELYGSEGAHTLLSGRHLRG 531

[Close]

BLAST of jgi.p|Trimin1|350564 vs. uniprot
Match: A0A836CEN4_9STRA (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEN4_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 1.220e-8
Identity = 62/211 (29.38%), Postives = 81/211 (38.39%), Query Frame = 0

Query:   12 VERACDNCYIHKRRCTGDGVPPCAACVQKGLDCSYSPSYDRAPARTVHLCDRTCASMTPHRTRRCLPPSALAPXXXXXXXXXXRAVRTSRPXXXXTLDADADDEAALPLKRPSTXXXXXXXXXXXXTRPPLPPGAGGWD-----AAAWGCGSDQLAAPLTHVPRLSPSSATGLLGLREHHFLAAFVSAYAATLIQYEAEFQPAIVEIMRAA 217
            V+ ACD+C+  KR+C+G    PC+ C  KG+ C +S    R P R   + +                                              DAD  D+AA                      P L  G+GG       + A        + PLT  PR+SPS+ATGLLGLREH FL A+  AYA      E E Q AI ++M  A
Sbjct:   40 VKAACDHCHRRKRKCSG--TEPCSRCQAKGIVCVFSMRSKRGPKRKRRVSEXXXXXXXXXXXXX-------------------------------XADADYGDDAA----------------SRDTPSPRLDRGSGGSSDQGGTSTAVTLHRAHASRPLTKYPRMSPSAATGLLGLREHGFLNAYCMAYAGIHFVDEPEMQSAIAQLMADA 201

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|350564 vs. uniprot

BLAST of jgi.p|Trimin1|350564 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A835YWD8_9STRA	1.990e-301	100.00	Zn(2)-C6 fungal-type domain-containing protein n=1...	[more]
A0A836CEN4_9STRA	1.220e-8	29.38	Zn(2)-C6 fungal-type domain-containing protein n=1...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001138	Zn(2)-C6 fungal-type DNA-binding domain	SMART	SM00066	gal4_2	coord: 10..55 e-value: 1.6E-4 score: 31.1
IPR001138	Zn(2)-C6 fungal-type DNA-binding domain	PFAM	PF00172	Zn_clus	coord: 14..50 e-value: 5.3E-7 score: 29.7
IPR001138	Zn(2)-C6 fungal-type DNA-binding domain	PROSITE	PS50048	ZN2_CY6_FUNGAL_2	coord: 15..46 score: 9.731999
IPR001138	Zn(2)-C6 fungal-type DNA-binding domain	CDD	cd00067	GAL4	coord: 14..47 e-value: 1.92931E-8 score: 48.0433
IPR036864	Zn(2)-C6 fungal-type DNA-binding domain superfamily	GENE3D	4.10.240.10		coord: 7..68 e-value: 7.9E-7 score: 30.9
IPR036864	Zn(2)-C6 fungal-type DNA-binding domain superfamily	SUPERFAMILY	57701	Zn2/Cys6 DNA-binding domain	coord: 12..51
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 79..96
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 103..118
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 129..143
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 222..241
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..150
None	No IPR available	PANTHER	PTHR13037	FORMIN	coord: 77..461

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_66	contig	Contig_66:446046..450427 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|350564	mRNA_9686	Tribonema minus UTEX_B_3156	mRNA	Contig_66 446046..450427 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|350564|estExt_Genemark1.C_Ctg_660055 ID=Trimin1|350564|estExt_Genemark1.C_Ctg_660055|Name=jgi.p|Trimin1|350564|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=532bp
MSDVFVRSEDTVERACDNCYIHKRRCTGDGVPPCAACVQKGLDCSYSPSY
DRAPARTVHLCDRTCASMTPHRTRRCLPPSALAPPPLPPPPPLQRAVRTS
RPRRRRTLDADADDEAALPLKRPSTGGSSAHQPPPPRTRPPLPPGAGGWD
AAAWGCGSDQLAAPLTHVPRLSPSSATGLLGLREHHFLAAFVSAYAATLI
QYEAEFQPAIVEIMRAAGGGGGGGGSSGGSGRGDLPLADAAPPSAPQASL
CSLWTAISVGAGAAAAQSALLLTKTSQLLLMLLRLLSLLPPLPLTSPPPP
LPPPPPPPPLRRFGAMVQGASVYAPEVRGYLRCAERAAHAAHQREGPTLT
TLHAFMMLTNVYVMLEDFNKLGVYLETTTDIAKSNPNPSPAHESETAGGA
PHPSVSRAPFVYISPHARDRLGVYLETTTDIAKSIARAHARALARLHDRD
ELHATVSVPPPLQENTWFLLESSAADSQPGRGAALRLAPGLIARSGHNTH
LEASLLNAVADCELYGSEGAHTLLSGRHLRG*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001138	Zn2-C6_fun-type_DNA-bd
IPR036864	Zn2-C6_fun-type_DNA-bd_sf