Trimin1|350491|estExt_Genemark1.C_Ctg_640065 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|350491
Unique Name	Trimin1\|350491\|estExt_Genemark1.C_Ctg_640065
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	719

Homology

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BLAST of jgi.p|Trimin1|350491 vs. uniprot
Match: A0A836C9W8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9W8_9STRA)

HSP 1 Score: 1160 bits (3001), Expect = 0.000e+0
Identity = 718/718 (100.00%), Postives = 718/718 (100.00%), Query Frame = 0

Query:    1 MQPDSHAGGDLEAQRDSRHATHEDEVIERVSASLAALAAAAHDTYATVRYPARYAFALCATRWWDRLYLCLLLLYAVAAPLHLTVTERSAEGSASALASXXXARIAHALLAMAALVAVPAVGAAVLRVTLPGAFRICAAHQGHDIGVFFALACKCLPGYVATPHASAAAQTAGSRTAGGAASDGQANPTSDPSPSRGGSGWQCLVCKRDNAYPEWWAGRGVEDVRMVLQRKEVDKRQIRAHFTAFTRYPQCVKCFTPCNYTGRSPAFDAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMESSVAASEMDYDIGYGVKPPRWHAAWRKARRFVRRFTARRRVSHKEPMLFFSKRLMREAEVQFMPDLPWEGLHHSGTFRVGDRIESYANVGQWTPRRTAAARTMPAFTRXXXXXXXXXXXXXXXXXXXXXXGAPPSYDVLYDDSARARHVFPHALRRARPPQQPQLVTLFYACVLFPLVALPLTGAAAYSXXXXXXXXXXXXXXXXXXXXXXXXIQLALAAAANKRAGARLCVTLGTLLLLPWVTLLAFGLLCLARSAGTTDLPWTAALFAPALVLAAAGAPASRCVRPFYGRIWAALSAPWLLFLLTLALKLDGTSGLWPIFSRIPWLGVFAPLQALVLALLALHALLPLVWEVTALVPPRGKGAAGGARTWVRSFKLKFAAGGGGGLRPR 718
            MQPDSHAGGDLEAQRDSRHATHEDEVIERVSASLAALAAAAHDTYATVRYPARYAFALCATRWWDRLYLCLLLLYAVAAPLHLTVTERSAEGSASALASXXXARIAHALLAMAALVAVPAVGAAVLRVTLPGAFRICAAHQGHDIGVFFALACKCLPGYVATPHASAAAQTAGSRTAGGAASDGQANPTSDPSPSRGGSGWQCLVCKRDNAYPEWWAGRGVEDVRMVLQRKEVDKRQIRAHFTAFTRYPQCVKCFTPCNYTGRSPAFDAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMESSVAASEMDYDIGYGVKPPRWHAAWRKARRFVRRFTARRRVSHKEPMLFFSKRLMREAEVQFMPDLPWEGLHHSGTFRVGDRIESYANVGQWTPRRTAAARTMPAFTRXXXXXXXXXXXXXXXXXXXXXXGAPPSYDVLYDDSARARHVFPHALRRARPPQQPQLVTLFYACVLFPLVALPLTGAAAYSXXXXXXXXXXXXXXXXXXXXXXXXIQLALAAAANKRAGARLCVTLGTLLLLPWVTLLAFGLLCLARSAGTTDLPWTAALFAPALVLAAAGAPASRCVRPFYGRIWAALSAPWLLFLLTLALKLDGTSGLWPIFSRIPWLGVFAPLQALVLALLALHALLPLVWEVTALVPPRGKGAAGGARTWVRSFKLKFAAGGGGGLRPR
Sbjct:    1 MQPDSHAGGDLEAQRDSRHATHEDEVIERVSASLAALAAAAHDTYATVRYPARYAFALCATRWWDRLYLCLLLLYAVAAPLHLTVTERSAEGSASALASXXXARIAHALLAMAALVAVPAVGAAVLRVTLPGAFRICAAHQGHDIGVFFALACKCLPGYVATPHASAAAQTAGSRTAGGAASDGQANPTSDPSPSRGGSGWQCLVCKRDNAYPEWWAGRGVEDVRMVLQRKEVDKRQIRAHFTAFTRYPQCVKCFTPCNYTGRSPAFDAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMESSVAASEMDYDIGYGVKPPRWHAAWRKARRFVRRFTARRRVSHKEPMLFFSKRLMREAEVQFMPDLPWEGLHHSGTFRVGDRIESYANVGQWTPRRTAAARTMPAFTRXXXXXXXXXXXXXXXXXXXXXXGAPPSYDVLYDDSARARHVFPHALRRARPPQQPQLVTLFYACVLFPLVALPLTGAAAYSXXXXXXXXXXXXXXXXXXXXXXXXIQLALAAAANKRAGARLCVTLGTLLLLPWVTLLAFGLLCLARSAGTTDLPWTAALFAPALVLAAAGAPASRCVRPFYGRIWAALSAPWLLFLLTLALKLDGTSGLWPIFSRIPWLGVFAPLQALVLALLALHALLPLVWEVTALVPPRGKGAAGGARTWVRSFKLKFAAGGGGGLRPR 718

[Close]

BLAST of jgi.p|Trimin1|350491 vs. uniprot
Match: A0A6H5L3X8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3X8_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 1.450e-23
Identity = 124/496 (25.00%), Postives = 178/496 (35.89%), Query Frame = 0

Query:  213 PEWWAGRGVEDVRMVLQRKEVDKRQIRAHFTAFTRYPQCVKCFTPCNYTGRSPAFDAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMESSVAASEMDYDIGYGVKPPRWHA-AWRKARRFVRRFTA----RRRVSHK------------EPMLFFSKRLMREAEVQFMPDLPWEGLHHSGTFRVGDRIESYANVGQWTPRRTAAARTMPAFTRXXXXXXXXXXXXXXXXXXXXXXGAPPSYDVLYDDSARARHVFPHALRRARPPQQPQLVTLFYACVLFPLVALPLTGAAAYSXXXXXXXXXXXXXXXXXXXXXXXXIQLALAAAA--------NKRAGARLCVTLGTLLLLPWVTLLAFGLLCLARSAGTTDL-PWTAALFAPALVLAAAGAPASRCVRPFYGRIWAALSAPWLLFLLTLALKLDGTSG-LWPIFSRIPWLGVFAPLQALVLALLALHALLPLVWEV 681
            P+ W GR  +DV +V++RK VD R +   F      P C KC TP NY+ R+                                                               S+ A   M+ + G GV     H     KA RF+R   +    RR  S K            EP L++ +   R+    F P+L        G + VG R+  +A    W P   AA+R                                 +YDV YD+   A+HVF H +R        +L   +Y   L    A PL G+  +S                            LA A         N+  G  +      +  LP ++L   G L + ++ G      W   L  P+++ +  G   +  V P YG+ WA  S+ WLLFLL +AL+LDG  G   P F ++ WLGV+ PL   +L L+A H  LP VW++
Sbjct:    3 PDEWDGRTGKDVHVVIKRKAVDTRAMYGLFKTKPGVPLCSKCHTPFNYSWRN----------------------GGGSDKLMQQRQQRLLDAALSRPTSAASTAVAAGSATDPALSAAADGLMNAENG-GVAAAAVHRRVLAKAARFIRGIYSQCRRRRAASSKTFDGRGGADAVEEPELWYGREFRRQLMTYFKPELSRPAAS-GGRYPVGARVACFAGKDAWYPGAVAASRENN------------------------------TYDVRYDNGDIAQHVFSHMIRFEPVHADSRLTCCYYGLALAAAAAWPLAGSWYFSSTSAATDAATSAAALVALPALVVGTAGTLAVAFQIWEIYADNRSTGLCVATKFAVIFALPSMSLTLVGGLAVVKALGPASAGSWVEMLLLPSMLFSLTGGGYAHAVSPAYGKAWAMASSLWLLFLLLVALRLDGERGDARPAFGKMRWLGVYFPLWVFLLMLIAAHEALPYVWDI 444

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|350491 vs. uniprot

BLAST of jgi.p|Trimin1|350491 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A836C9W8_9STRA	0.000e+0	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A6H5L3X8_9PHAE	1.450e-23	25.00	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 279..325
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 172..194
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 265..325

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_64	contig	Contig_64:547937..555457 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|350491	mRNA_10135	Tribonema minus UTEX_B_3156	mRNA	Contig_64 547937..555458 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|350491|estExt_Genemark1.C_Ctg_640065 ID=Trimin1|350491|estExt_Genemark1.C_Ctg_640065|Name=jgi.p|Trimin1|350491|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=719bp
MQPDSHAGGDLEAQRDSRHATHEDEVIERVSASLAALAAAAHDTYATVRY
PARYAFALCATRWWDRLYLCLLLLYAVAAPLHLTVTERSAEGSASALASA
SAARIAHALLAMAALVAVPAVGAAVLRVTLPGAFRICAAHQGHDIGVFFA
LACKCLPGYVATPHASAAAQTAGSRTAGGAASDGQANPTSDPSPSRGGSG
WQCLVCKRDNAYPEWWAGRGVEDVRMVLQRKEVDKRQIRAHFTAFTRYPQ
CVKCFTPCNYTGRSPAFDAPPPPPQQPQLSTSTSRSPGGTTASSTLSSSA
RASLKKSAQRQRPQQRQQLLLQQSSMESSVAASEMDYDIGYGVKPPRWHA
AWRKARRFVRRFTARRRVSHKEPMLFFSKRLMREAEVQFMPDLPWEGLHH
SGTFRVGDRIESYANVGQWTPRRTAAARTMPAFTRDRIESYANVGQWTPG
RIAAARTGAPPSYDVLYDDSARARHVFPHALRRARPPQQPQLVTLFYACV
LFPLVALPLTGAAAYSGAARAAAAAAPVATAAALMVAAVLIQLALAAAAN
KRAGARLCVTLGTLLLLPWVTLLAFGLLCLARSAGTTDLPWTAALFAPAL
VLAAAGAPASRCVRPFYGRIWAALSAPWLLFLLTLALKLDGTSGLWPIFS
RIPWLGVFAPLQALVLALLALHALLPLVWEVTALVPPRGKGAAGGARTWV
RSFKLKFAAGGGGGLRPR*