Trimin1|350486|estExt_Genemark1.C_Ctg_640050 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|350486
Unique NameTrimin1|350486|estExt_Genemark1.C_Ctg_640050
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length104
Homology
BLAST of jgi.p|Trimin1|350486 vs. uniprot
Match: A0A836C9E5_9STRA (CHRD domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9E5_9STRA)

HSP 1 Score: 213 bits (541), Expect = 5.860e-70
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0
Query:    1 TDGPGDATGQGTAKIVLQGQKLCFVLTTNLEGIVAGHIHKGAVGVDGDVFIDLLGALADLIKNPLKACLQLSTAEAQALLTDPAGYYVNVHTDQHPGGAIRSQL 104
            TDGPGDATGQGTAKIVLQGQKLCFVLTTNLEGIVAGHIHKGAVGVDGDVFIDLLGALADLIKNPLKACLQLSTAEAQALLTDPAGYYVNVHTDQHPGGAIRSQL
Sbjct:    1 TDGPGDATGQGTAKIVLQGQKLCFVLTTNLEGIVAGHIHKGAVGVDGDVFIDLLGALADLIKNPLKACLQLSTAEAQALLTDPAGYYVNVHTDQHPGGAIRSQL 104          
BLAST of jgi.p|Trimin1|350486 vs. uniprot
Match: A0A835YML2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YML2_9STRA)

HSP 1 Score: 175 bits (444), Expect = 7.130e-49
Identity = 83/92 (90.22%), Postives = 87/92 (94.57%), Query Frame = 0
Query:    1 TDGPGDATGQGTAKIVLQGQKLCFVLTTNLEGIVAGHIHKGAVGVDGDVFIDLLGALADLIKNPLKACLQLSTAEAQALLTDPAGYYVNVHT 92
            TDGPGDATGQGTAKIVLQGQKLCFVLTTNL+GIVAGHIHKGA G+DGDVFIDLLG LADL KNPLKAC+QLS AEAQALL DPAGYY+NVHT
Sbjct:  481 TDGPGDATGQGTAKIVLQGQKLCFVLTTNLQGIVAGHIHKGAAGIDGDVFIDLLGGLADLTKNPLKACVQLSAAEAQALLADPAGYYINVHT 572          
BLAST of jgi.p|Trimin1|350486 vs. uniprot
Match: A0A836C9W3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9W3_9STRA)

HSP 1 Score: 141 bits (355), Expect = 8.480e-37
Identity = 64/99 (64.65%), Postives = 78/99 (78.79%), Query Frame = 0
Query:    6 DATGQGTAKIVLQGQKLCFVLTTNLEGIVAGHIHKGAVGVDGDVFIDLLGALADLIKNPLKACLQLSTAEAQALLTDPAGYYVNVHTDQHPGGAIRSQL 104
            D  GQGTAK  + G+ LCF + TNL+GIVAGHIH+GA GVDGDV++DL G +ADL  NPL+AC+ L+ A+A+AL+  P  YYVNVHTDQ P GAIRSQL
Sbjct:  268 DPEGQGTAKFAIAGRTLCFTMKTNLKGIVAGHIHQGAAGVDGDVYVDLFGGIADLTANPLQACITLTYAQAKALVKTPTDYYVNVHTDQFPDGAIRSQL 366          
BLAST of jgi.p|Trimin1|350486 vs. uniprot
Match: A0A835YYA4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYA4_9STRA)

HSP 1 Score: 107 bits (268), Expect = 4.890e-27
Identity = 47/82 (57.32%), Postives = 62/82 (75.61%), Query Frame = 0
Query:   11 GTAKIVLQGQKLCFVLTTNLEGIVAGHIHKGAVGVDGDVFIDLLGALADLIKNPLKACLQLSTAEAQALLTDPAGYYVNVHT 92
            G  +  + G+ LCF + TNL+GIVA HIH+GA GVDGDV++DL G +ADL  NPL+AC+ L+ A+A+AL+  P  YYVNVHT
Sbjct:  135 GHRQFAIAGRTLCFTMKTNLQGIVAEHIHEGAAGVDGDVYVDLFGGIADLTANPLQACITLTHAQAKALVKTPTDYYVNVHT 216          
BLAST of jgi.p|Trimin1|350486 vs. uniprot
Match: A0A835YI34_9STRA (CHRD domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YI34_9STRA)

HSP 1 Score: 100 bits (249), Expect = 9.610e-25
Identity = 50/105 (47.62%), Postives = 64/105 (60.95%), Query Frame = 0
Query:    2 DGPGDATGQGTAKIVL-QGQKLCFVLTTNLEGIVAGHIHKGAVGVDGDVFIDLLGALADLIKNPLKACLQLSTAEAQ-ALLTDPAGYYVNVHTDQHPGGAIRSQL 104
            D  GD  G GTA       + +CF + T L+G+ AGHIHKG VG +GDV +DLL  LAD   NPL+ C+ L       A+L +PAG+YVN+H    P GAIR Q+
Sbjct:   59 DPTGDPNGGGTATFFTPDDETICFSIDTTLDGVTAGHIHKGVVGTNGDVVVDLLSVLADTKVNPLEGCVDLGGQRPLLAILENPAGFYVNIHNIDFPKGAIRGQM 163          
BLAST of jgi.p|Trimin1|350486 vs. uniprot
Match: A0A397NQ64_9SPHN (CHRD domain-containing protein n=1 Tax=Hephaestia caeni TaxID=645617 RepID=A0A397NQ64_9SPHN)

HSP 1 Score: 83.2 bits (204), Expect = 3.350e-18
Identity = 47/105 (44.76%), Postives = 56/105 (53.33%), Query Frame = 0
Query:    3 GPGDATGQGTAKIVLQGQKLCFVLTTNLEGI---VAGHIHKGAVGVDGDVFIDLLGALADLIKNPLKACLQLSTAEAQALLTDPAGYYVNVHTDQHPGGAIRSQL 104
            GPGD  G GT K+           T ++ GI    A HIHKGA+GV G   + L    A       K CL +  A A A++ DPAGYYVNVHT  +P GAIR QL
Sbjct:   39 GPGDPDGTGTVKVTADSATNTVCYTLDVRGISAPTAAHIHKGALGVAGPPVLPL----APPTSGRSKECLSVDKALAAAIIADPAGYYVNVHTADYPKGAIRGQL 139          
BLAST of jgi.p|Trimin1|350486 vs. uniprot
Match: A0A535UIK2_9CHLR (CHRD domain-containing protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535UIK2_9CHLR)

HSP 1 Score: 77.4 bits (189), Expect = 5.920e-16
Identity = 41/103 (39.81%), Postives = 53/103 (51.46%), Query Frame = 0
Query:    4 PGDATGQGTAKIVLQGQKLCFVLTTNLEG--IVAGHIHKGAVGVDGDVFIDLLGALADLIKNPLKACLQLSTAEAQALLTDPAGYYVNVHTDQHPGGAIRSQL 104
            PG + G GTAKI + G  LC+ LT N      +AGHIH+G  G  G + + L    A         C  ++   A  +  +P  YYVN+HT  HP GAIR QL
Sbjct:   43 PGPSGGAGTAKITIDGTNLCYDLTWNAATGTPIAGHIHQGPKGASGPIVVTLSPTTAH-------TCTTVAPTIASGIAGNPGNYYVNLHTQDHPDGAIRGQL 138          
BLAST of jgi.p|Trimin1|350486 vs. uniprot
Match: UPI001EF6F767 (CHRD domain-containing protein n=3 Tax=Frankia TaxID=1854 RepID=UPI001EF6F767)

HSP 1 Score: 80.5 bits (197), Expect = 8.130e-16
Identity = 47/104 (45.19%), Postives = 62/104 (59.62%), Query Frame = 0
Query:    5 GDATGQGTAKIVLQGQKLCFVLTTNLEGIVA---GHIHKGAVGVDGDVFIDLLG-ALADLIKNPLKACLQLSTAEAQALLTDPAGYYVNVHTDQHPGGAIRSQL 104
            GD  G  TA I LQG ++ F  +   +GI A   GHIH+GA GV+GDV + L G A+ + +     A      A A AL  DPAG+Y+N+HT + PGGA+R QL
Sbjct:   81 GDPDGSATAIIRLQGDRVTFAFSW--KGIGAPTLGHIHQGAAGVNGDVKVALWGTAVPETVTADAGAVTVSDPAIADALRADPAGFYLNLHTQEFPGGAVRGQL 182          
BLAST of jgi.p|Trimin1|350486 vs. uniprot
Match: UPI001B83835D (CHRD domain-containing protein n=1 Tax=Sphingomonadaceae bacterium LXI357 TaxID=2826939 RepID=UPI001B83835D)

HSP 1 Score: 76.3 bits (186), Expect = 2.020e-15
Identity = 43/105 (40.95%), Postives = 56/105 (53.33%), Query Frame = 0
Query:    3 GPGDATGQGTAKIVLQGQK--LCFVLTT-NLEGIVAGHIHKGAVGVDGDVFIDLLGALADLIKNPLKACLQLSTAEAQALLTDPAGYYVNVHTDQHPGGAIRSQL 104
            GPGD  G GTAK+        +C+ LT  ++    A HIH+GA GV G   + L       +    K CL +    A A++ +P GYYVNVHT  +P GAIR QL
Sbjct:   46 GPGDPDGSGTAKVTADATTGTICYELTVQDISQPTAAHIHQGARGVAGPPVLQLKPP----VTGSSKECLDVDKQLAAAIIANPTGYYVNVHTADYPKGAIRGQL 146          
BLAST of jgi.p|Trimin1|350486 vs. uniprot
Match: A0A5C6ULP5_9SPHN (CHRD domain-containing protein n=2 Tax=Sphingorhabdus soli TaxID=2601267 RepID=A0A5C6ULP5_9SPHN)

HSP 1 Score: 79.3 bits (194), Expect = 2.700e-15
Identity = 43/105 (40.95%), Postives = 55/105 (52.38%), Query Frame = 0
Query:    3 GPGDATGQGTAKIVLQG--QKLCFVLTTNLEGI-VAGHIHKGAVGVDGDVFIDLLGALADLIKNPLKACLQLSTAEAQALLTDPAGYYVNVHTDQHPGGAIRSQL 104
            GPGD  G GTAKI        +C+ +T    G   A H+H+GA GV G   +      A         CL +  A A +++ DP+ YYVNVHT  +PGGAIR QL
Sbjct:  249 GPGDPDGTGTAKITADATTNTVCYDITVQRIGTPTAAHLHRGAAGVSGPPVVTFKAPTAGATSE----CLSVDKALAASIIADPSNYYVNVHTADYPGGAIRGQL 349          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|350486 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C9E5_9STRA5.860e-70100.00CHRD domain-containing protein (Fragment) n=1 Tax=... [more]
A0A835YML2_9STRA7.130e-4990.22Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836C9W3_9STRA8.480e-3764.65Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YYA4_9STRA4.890e-2757.32Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YI34_9STRA9.610e-2547.62CHRD domain-containing protein n=1 Tax=Tribonema m... [more]
A0A397NQ64_9SPHN3.350e-1844.76CHRD domain-containing protein n=1 Tax=Hephaestia ... [more]
A0A535UIK2_9CHLR5.920e-1639.81CHRD domain-containing protein n=1 Tax=Chloroflexi... [more]
UPI001EF6F7678.130e-1645.19CHRD domain-containing protein n=3 Tax=Frankia Tax... [more]
UPI001B83835D2.020e-1540.95CHRD domain-containing protein n=1 Tax=Sphingomona... [more]
A0A5C6ULP5_9SPHN2.700e-1540.95CHRD domain-containing protein n=2 Tax=Sphingorhab... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010895CHRDSMARTSM00754chrd_5coord: 1..104
e-value: 8.3E-4
score: 27.2
IPR010895CHRDPFAMPF07452CHRDcoord: 5..104
e-value: 4.3E-16
score: 59.9

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_64contigContig_64:421123..424756 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350486mRNA_10120Tribonema minus UTEX_B_3156 mRNAContig_64 421121..424756 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|350486|estExt_Genemark1.C_Ctg_640050 ID=Trimin1|350486|estExt_Genemark1.C_Ctg_640050|Name=jgi.p|Trimin1|350486|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=104bp
TDGPGDATGQGTAKIVLQGQKLCFVLTTNLEGIVAGHIHKGAVGVDGDVF
IDLLGALADLIKNPLKACLQLSTAEAQALLTDPAGYYVNVHTDQHPGGAI
RSQL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010895CHRD