Trimin1|350447|estExt_Genemark1.C_Ctg_630034 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|350447
Unique Name	Trimin1\|350447\|estExt_Genemark1.C_Ctg_630034
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	1052

Homology

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BLAST of jgi.p|Trimin1|350447 vs. uniprot
Match: A0A836CAA1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAA1_9STRA)

HSP 1 Score: 1466 bits (3794), Expect = 0.000e+0
Identity = 1051/1051 (100.00%), Postives = 1051/1051 (100.00%), Query Frame = 0

Query:    1 MQAVGGRPKVLVDALVFTLAEIPELLVVEVYRGSRNELVGCGAIDSVARVLNGGKRWVTLFVNGAPGGRLQLELETTGGKGRVRVEVPVEVIREVEVIKEVPXXXXXXXQVEVPXXXXXXXXXXXXXPVEVEVEVVREVTRELQAQEVEALCAATCRDSSAPGGVLSHSDGLAVGAALLEYGQFQEAAIVYRTVLERRPLDVEVKVKARTGLGDALRGAGDAANALEACQALAAFETALALAAQSEGATAGQEVGAALVQGSWASEAVPVLRXXXXXXXXXXXXXXXXXXXXXXXDSAGAIAELGLLLVKDGEERQQGLLMEPAERRRPGAHAQAALLLSRVHLELGRLQEHEAAQEALHNYSAAVALDPSCADAYVAAARLLRATDDAGRALAVAKSGNVRLLVQKGLALHALQRVEEAVHVLSNAVTASPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLLQLLQDAVMEANPASPPASSARRVTMVDAPAPEDAGVATGDEQLAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAQRLPEGIVVHIEHTATTPPHTFVPYDDDDTAAAYDSQQHNQSDHGDTGTSGVSXXXXXXAESDSAGSXXAVXXEXXXXXXXXXXXXAHGGASYEQLPSESASAEHADDSAQVAADVXXXXXXXXXXXXXXXXXXXXXXXXXPAADPDSGSGSDGAGSDAVSSAQEVHLPLQEGGAHVVERIKGERGYKPTGEERGVPMDEAEAAALAKRELAEREAAKRSGGGAGGEDRELEHGSGDVTGEGQEAKGAVGDAXXXXXXXXXXXXXXXXXXXXXAAKVEVEIPVAAEESSDAANELEEQAVEVSRQDDDAGGGAAQGAGSAESDAADITASESYAGMGNAYMAKGKPDLALKQFAKAVKRNPGWWGGHSKTAEALATKGDFGRASEATVKSLQAAGATLPEELALTAMQLASTMITKDKAIHSLPILELLVEIVAKSPSAXXXXXXXSNAQVLLASALGMTGNAARATAILESVLKVDPEHELMRECDA 1051
            MQAVGGRPKVLVDALVFTLAEIPELLVVEVYRGSRNELVGCGAIDSVARVLNGGKRWVTLFVNGAPGGRLQLELETTGGKGRVRVEVPVEVIREVEVIKEVPXXXXXXXQVEVPXXXXXXXXXXXXXPVEVEVEVVREVTRELQAQEVEALCAATCRDSSAPGGVLSHSDGLAVGAALLEYGQFQEAAIVYRTVLERRPLDVEVKVKARTGLGDALRGAGDAANALEACQALAAFETALALAAQSEGATAGQEVGAALVQGSWASEAVPVLRXXXXXXXXXXXXXXXXXXXXXXXDSAGAIAELGLLLVKDGEERQQGLLMEPAERRRPGAHAQAALLLSRVHLELGRLQEHEAAQEALHNYSAAVALDPSCADAYVAAARLLRATDDAGRALAVAKSGNVRLLVQKGLALHALQRVEEAVHVLSNAVTASPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLLQLLQDAVMEANPASPPASSARRVTMVDAPAPEDAGVATGDEQLAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAQRLPEGIVVHIEHTATTPPHTFVPYDDDDTAAAYDSQQHNQSDHGDTGTSGVSXXXXXXAESDSAGSXXAVXXEXXXXXXXXXXXXAHGGASYEQLPSESASAEHADDSAQVAADVXXXXXXXXXXXXXXXXXXXXXXXXXPAADPDSGSGSDGAGSDAVSSAQEVHLPLQEGGAHVVERIKGERGYKPTGEERGVPMDEAEAAALAKRELAEREAAKRSGGGAGGEDRELEHGSGDVTGEGQEAKGAVGDAXXXXXXXXXXXXXXXXXXXXXAAKVEVEIPVAAEESSDAANELEEQAVEVSRQDDDAGGGAAQGAGSAESDAADITASESYAGMGNAYMAKGKPDLALKQFAKAVKRNPGWWGGHSKTAEALATKGDFGRASEATVKSLQAAGATLPEELALTAMQLASTMITKDKAIHSLPILELLVEIVAKSPSAXXXXXXXSNAQVLLASALGMTGNAARATAILESVLKVDPEHELMRECDA
Sbjct:    1 MQAVGGRPKVLVDALVFTLAEIPELLVVEVYRGSRNELVGCGAIDSVARVLNGGKRWVTLFVNGAPGGRLQLELETTGGKGRVRVEVPVEVIREVEVIKEVPXXXXXXXQVEVPXXXXXXXXXXXXXPVEVEVEVVREVTRELQAQEVEALCAATCRDSSAPGGVLSHSDGLAVGAALLEYGQFQEAAIVYRTVLERRPLDVEVKVKARTGLGDALRGAGDAANALEACQALAAFETALALAAQSEGATAGQEVGAALVQGSWASEAVPVLRXXXXXXXXXXXXXXXXXXXXXXXDSAGAIAELGLLLVKDGEERQQGLLMEPAERRRPGAHAQAALLLSRVHLELGRLQEHEAAQEALHNYSAAVALDPSCADAYVAAARLLRATDDAGRALAVAKSGNVRLLVQKGLALHALQRVEEAVHVLSNAVTASPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLLQLLQDAVMEANPASPPASSARRVTMVDAPAPEDAGVATGDEQLAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAQRLPEGIVVHIEHTATTPPHTFVPYDDDDTAAAYDSQQHNQSDHGDTGTSGVSXXXXXXAESDSAGSXXAVXXEXXXXXXXXXXXXAHGGASYEQLPSESASAEHADDSAQVAADVXXXXXXXXXXXXXXXXXXXXXXXXXPAADPDSGSGSDGAGSDAVSSAQEVHLPLQEGGAHVVERIKGERGYKPTGEERGVPMDEAEAAALAKRELAEREAAKRSGGGAGGEDRELEHGSGDVTGEGQEAKGAVGDAXXXXXXXXXXXXXXXXXXXXXAAKVEVEIPVAAEESSDAANELEEQAVEVSRQDDDAGGGAAQGAGSAESDAADITASESYAGMGNAYMAKGKPDLALKQFAKAVKRNPGWWGGHSKTAEALATKGDFGRASEATVKSLQAAGATLPEELALTAMQLASTMITKDKAIHSLPILELLVEIVAKSPSAXXXXXXXSNAQVLLASALGMTGNAARATAILESVLKVDPEHELMRECDA 1051

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|350447 vs. uniprot

BLAST of jgi.p|Trimin1|350447 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A836CAA1_9STRA	0.000e+0	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 848..868
None	No IPR available	PFAM	PF13432	TPR_16	coord: 899..957 e-value: 0.0047 score: 17.5 coord: 407..469 e-value: 1.9E-10 score: 41.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 582..886
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 483..510
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 597..620
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 740..802
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 683..697
None	No IPR available	PANTHER	PTHR45586	TPR REPEAT-CONTAINING PROTEIN PA4667	coord: 405..469 coord: 174..388
None	No IPR available	PANTHER	PTHR45586:SF11	LIPOPOLYSACCHARIDE ASSEMBLY PROTEIN B	coord: 174..388
None	No IPR available	PANTHER	PTHR45586:SF11	LIPOPOLYSACCHARIDE ASSEMBLY PROTEIN B	coord: 405..469
IPR019734	Tetratricopeptide repeat	SMART	SM00028	tpr_5	coord: 340..372 e-value: 240.0 score: 2.9 coord: 1010..1043 e-value: 43.0 score: 9.4 coord: 401..434 e-value: 5.8 score: 15.9 coord: 206..239 e-value: 190.0 score: 3.7 coord: 435..468 e-value: 8.6E-4 score: 28.6 coord: 893..926 e-value: 6.9E-4 score: 28.9 coord: 168..201 e-value: 390.0 score: 1.0
IPR019734	Tetratricopeptide repeat	PROSITE	PS50005	TPR	coord: 435..468 score: 9.0569
IPR019734	Tetratricopeptide repeat	PROSITE	PS50005	TPR	coord: 893..926 score: 10.5319
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 172..399 e-value: 1.2E-12 score: 49.7
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 844..1048 e-value: 3.1E-12 score: 48.1
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 403..488 e-value: 7.9E-14 score: 53.5
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	48452	TPR-like	coord: 174..956
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	48452	TPR-like	coord: 887..1043

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_63	contig	Contig_63:332018..352348 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|350447	mRNA_10286	Tribonema minus UTEX_B_3156	mRNA	Contig_63 332018..352348 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|350447|estExt_Genemark1.C_Ctg_630034 ID=Trimin1|350447|estExt_Genemark1.C_Ctg_630034|Name=jgi.p|Trimin1|350447|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=1052bp
MQAVGGRPKVLVDALVFTLAEIPELLVVEVYRGSRNELVGCGAIDSVARV
LNGGKRWVTLFVNGAPGGRLQLELETTGGKGRVRVEVPVEVIREVEVIKE
VPVETVREVQVEVPVIKEVQVEVIREVPVEVEVEVVREVTRELQAQEVEA
LCAATCRDSSAPGGVLSHSDGLAVGAALLEYGQFQEAAIVYRTVLERRPL
DVEVKVKARTGLGDALRGAGDAANALEACQALAAFETALALAAQSEGATA
GQEVGAALVQGSWASEAVPVLRKALASGAGHAAALPLAKALSMSGDSAGA
IAELGLLLVKDGEERQQGLLMEPAERRRPGAHAQAALLLSRVHLELGRLQ
EHEAAQEALHNYSAAVALDPSCADAYVAAARLLRATDDAGRALAVAKSGN
VRLLVQKGLALHALQRVEEAVHVLSNAVTASPDNVEALVALGDCQRGAGR
PQEAIAVYSRALAQAPNDPSLLQLLQDAVMEANPASPPASSARRVTMVDA
PAPEDAGVATGDEQLAAAAAGDAATADDAAAAAAEADDAAAAAADGAAAA
AAAAVVDAAAAVAQRLPEGIVVHIEHTATTPPHTFVPYDDDDTAAAYDSQ
QHNQSDHGDTGTSGVSSGGGGGAESDSAGSGGAVGGERGGSSGNGAGGSA
HGGASYEQLPSESASAEHADDSAQVAADVSAQHADVSAQQHADGSAQLSD
DSPEPAADPDSGSGSDGAGSDAVSSAQEVHLPLQEGGAHVVERIKGERGY
KPTGEERGVPMDEAEAAALAKRELAEREAAKRSGGGAGGEDRELEHGSGD
VTGEGQEAKGAVGDAEEGQSTGGEAAASSGEAGDAPAAKVEVEIPVAAEE
SSDAANELEEQAVEVSRQDDDAGGGAAQGAGSAESDAADITASESYAGMG
NAYMAKGKPDLALKQFAKAVKRNPGWWGGHSKTAEALATKGDFGRASEAT
VKSLQAAGATLPEELALTAMQLASTMITKDKAIHSLPILELLVEIVAKSP
SASTSTSTSSNAQVLLASALGMTGNAARATAILESVLKVDPEHELMRECD
A*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR019734	TPR_repeat
IPR011990	TPR-like_helical_dom_sf