Trimin1|350028|estExt_Genemark1.C_Ctg_540087 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|350028
Unique Name	Trimin1\|350028\|estExt_Genemark1.C_Ctg_540087
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	316

Homology

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BLAST of jgi.p|Trimin1|350028 vs. uniprot
Match: A0A835YPN7_9STRA (HSF_DOMAIN domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPN7_9STRA)

HSP 1 Score: 625 bits (1612), Expect = 2.950e-226
Identity = 315/315 (100.00%), Postives = 315/315 (100.00%), Query Frame = 0

Query:    1 MTEEDFRVIAAGYKRKAKTPCASAAPAAIRTEARGTEPRSAVTGDRNRDFAYRLHRHLQKGDAGGLVWSADVCHFSSFRRQLSYYAFKAHGQERDRAGKAASAFSHPNFHRDMTEDDFRVIAAGYKTKAKTPCVSTGAVCLEARGTGPRSNVTGVSNKVHDDNGGVEGARHSVGTGSLGRDLAVQTTQGPERDVAPDGVGDAKGHAMLRHIIEATQTVAARSWGVPTLRDAQTILRWIDECDQLQSALGQKQKGHEARPWQAVAHAAAEASACAPAKEAGVAYGAAAEDGGAEGNERCTKRAKILSFADGEEVEL 315
            MTEEDFRVIAAGYKRKAKTPCASAAPAAIRTEARGTEPRSAVTGDRNRDFAYRLHRHLQKGDAGGLVWSADVCHFSSFRRQLSYYAFKAHGQERDRAGKAASAFSHPNFHRDMTEDDFRVIAAGYKTKAKTPCVSTGAVCLEARGTGPRSNVTGVSNKVHDDNGGVEGARHSVGTGSLGRDLAVQTTQGPERDVAPDGVGDAKGHAMLRHIIEATQTVAARSWGVPTLRDAQTILRWIDECDQLQSALGQKQKGHEARPWQAVAHAAAEASACAPAKEAGVAYGAAAEDGGAEGNERCTKRAKILSFADGEEVEL
Sbjct:    1 MTEEDFRVIAAGYKRKAKTPCASAAPAAIRTEARGTEPRSAVTGDRNRDFAYRLHRHLQKGDAGGLVWSADVCHFSSFRRQLSYYAFKAHGQERDRAGKAASAFSHPNFHRDMTEDDFRVIAAGYKTKAKTPCVSTGAVCLEARGTGPRSNVTGVSNKVHDDNGGVEGARHSVGTGSLGRDLAVQTTQGPERDVAPDGVGDAKGHAMLRHIIEATQTVAARSWGVPTLRDAQTILRWIDECDQLQSALGQKQKGHEARPWQAVAHAAAEASACAPAKEAGVAYGAAAEDGGAEGNERCTKRAKILSFADGEEVEL 315

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BLAST of jgi.p|Trimin1|350028 vs. uniprot
Match: A0A836CAD7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAD7_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 4.450e-12
Identity = 34/47 (72.34%), Postives = 39/47 (82.98%), Query Frame = 0

Query:  206 AMLRHIIEATQTVAARSWGVPTLRDAQTILRWIDECDQL-QSALGQK 251
            A++      ++TVAARSWG PTLRDAQTILRWIDECDQL QSALGQ+
Sbjct:    3 ALMAEFHADSETVAARSWGAPTLRDAQTILRWIDECDQLLQSALGQR 49

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|350028 vs. uniprot

BLAST of jgi.p|Trimin1|350028 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A835YPN7_9STRA	2.950e-226	100.00	HSF_DOMAIN domain-containing protein n=1 Tax=Tribo...	[more]
A0A836CAD7_9STRA	4.450e-12	72.34	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 46..120 e-value: 3.8E-5 score: 25.8
IPR000232	Heat shock factor (HSF)-type, DNA-binding	PFAM	PF00447	HSF_DNA-bind	coord: 74..114 e-value: 5.2E-5 score: 23.7

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_54	contig	Contig_54:694304..696148 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|350028	mRNA_7101	Tribonema minus UTEX_B_3156	mRNA	Contig_54 694304..696468 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|350028|estExt_Genemark1.C_Ctg_540087 ID=Trimin1|350028|estExt_Genemark1.C_Ctg_540087|Name=jgi.p|Trimin1|350028|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=316bp
MTEEDFRVIAAGYKRKAKTPCASAAPAAIRTEARGTEPRSAVTGDRNRDF
AYRLHRHLQKGDAGGLVWSADVCHFSSFRRQLSYYAFKAHGQERDRAGKA
ASAFSHPNFHRDMTEDDFRVIAAGYKTKAKTPCVSTGAVCLEARGTGPRS
NVTGVSNKVHDDNGGVEGARHSVGTGSLGRDLAVQTTQGPERDVAPDGVG
DAKGHAMLRHIIEATQTVAARSWGVPTLRDAQTILRWIDECDQLQSALGQ
KQKGHEARPWQAVAHAAAEASACAPAKEAGVAYGAAAEDGGAEGNERCTK
RAKILSFADGEEVEL*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR036388	WH-like_DNA-bd_sf
IPR000232	HSF_DNA-bd