Trimin1|349939|estExt_Genemark1.C_Ctg_520020 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|349939
Unique NameTrimin1|349939|estExt_Genemark1.C_Ctg_520020
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length312
Homology
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BLAST of jgi.p|Trimin1|349939 vs. uniprot
Match: A0A836CCT3_9STRA (EGF-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCT3_9STRA)

HSP 1 Score: 613 bits (1580), Expect = 1.630e-221
Identity = 311/311 (100.00%), Postives = 311/311 (100.00%), Query Frame = 0 
Query:    1 MQTSLMSLALMLAPLLLCGAIEPPERVLPSQSLAEAAAGLDIGCNKGVLTVTQLDMGAGLCPMLVCCPKNCPLCADRANCLKHADDPSCCPKQDIATTLLHIDTGLSDIEVSCRYKAPPCTMPPADDPCVGTQASMCRQDARCGVRYISDDPSYVQGTTTSTDNGCIGTESYCACPAGFTGRRCERKCKKGQTACGYEVISYHSKGFTPNDICCARNQVCMRVAERFGFKTLCLPEGHPNDSGTXXXXXXXXXXXXXXXXXXXXXKKCTLNPCQNGGRCVNLNEYQQDQYGAYVCRCAKGFHGALCQFKDK 311
            MQTSLMSLALMLAPLLLCGAIEPPERVLPSQSLAEAAAGLDIGCNKGVLTVTQLDMGAGLCPMLVCCPKNCPLCADRANCLKHADDPSCCPKQDIATTLLHIDTGLSDIEVSCRYKAPPCTMPPADDPCVGTQASMCRQDARCGVRYISDDPSYVQGTTTSTDNGCIGTESYCACPAGFTGRRCERKCKKGQTACGYEVISYHSKGFTPNDICCARNQVCMRVAERFGFKTLCLPEGHPNDSGTXXXXXXXXXXXXXXXXXXXXXKKCTLNPCQNGGRCVNLNEYQQDQYGAYVCRCAKGFHGALCQFKDK
Sbjct:    1 MQTSLMSLALMLAPLLLCGAIEPPERVLPSQSLAEAAAGLDIGCNKGVLTVTQLDMGAGLCPMLVCCPKNCPLCADRANCLKHADDPSCCPKQDIATTLLHIDTGLSDIEVSCRYKAPPCTMPPADDPCVGTQASMCRQDARCGVRYISDDPSYVQGTTTSTDNGCIGTESYCACPAGFTGRRCERKCKKGQTACGYEVISYHSKGFTPNDICCARNQVCMRVAERFGFKTLCLPEGHPNDSGTXXXXXXXXXXXXXXXXXXXXXKKCTLNPCQNGGRCVNLNEYQQDQYGAYVCRCAKGFHGALCQFKDK 311
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BLAST of jgi.p|Trimin1|349939 vs. uniprot
Match: A0A836CBA5_9STRA (EGF-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBA5_9STRA)

HSP 1 Score: 437 bits (1123), Expect = 1.420e-152
Identity = 204/294 (69.39%), Postives = 228/294 (77.55%), Query Frame = 0 
Query:   27 VLPSQSLAEAAAGLDIGCNKGVLTVTQLDMGAGLCPMLVCCPKNCPLCADRANCLKHADDPSCCPKQDIATTLLHIDTGLSDIEVSCRYKAPPCTMPPADDPCVGTQASMCRQDARCGVRYISDDPSYVQGTTTSTDNGCIGTESYCACPAGFTGRRCERKCKKGQTACGYEVISYHSKGFTPNDICCARNQVCMRVAERFGFKTLCLPEGHPNDSGTXXXXXXXXXXXXXXXXXXXXXKKCTLN---------PCQNGGRCVNLNEYQQDQYGAYVCRCAKGFHGALCQFKDK 311
            +LPSQSLAEAA GLDI C++GVLTVTQLDMGAGLCP+LVCCPKNCPLCADRANCLKHADDPSCCPK DIAT+L HIDTGLSDIEVSCRYKAPPCTMPPADDPCV    ++CRQDARCGVRY+SD PSYVQGT+TSTD+GCIG E+YCACP GFTG RCERKCKKGQT CGY      SK F PNDICCAR++VC++V E +G+ T CLP+G P                          +KCT +         PC+NGG+CVNLN +QQ QY AYVCRCAKGFHG LCQ+KDK
Sbjct:    1 MLPSQSLAEAAPGLDISCDRGVLTVTQLDMGAGLCPLLVCCPKNCPLCADRANCLKHADDPSCCPKPDIATSLQHIDTGLSDIEVSCRYKAPPCTMPPADDPCVDRHGAVCRQDARCGVRYVSDAPSYVQGTSTSTDSGCIGAEAYCACPEGFTGPRCERKCKKGQTPCGYGYSPVRSKSFGPNDICCARDRVCVKVGEHWGYNTRCLPKGRP--------------------------QKCTPSKFTHPQVPDPCRNGGKCVNLNYWQQPQYAAYVCRCAKGFHGPLCQYKDK 268
[Close]
BLAST of jgi.p|Trimin1|349939 vs. uniprot
Match: A0A836CBW0_9STRA (EGF-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBW0_9STRA)

HSP 1 Score: 374 bits (961), Expect = 1.190e-124
Identity = 189/311 (60.77%), Postives = 211/311 (67.85%), Query Frame = 0 
Query:   34 AEAAAGLDIGCNKGVLTVTQLDMGAGLCPMLVCCPKNCPLCADRANCLKHADDPSCCPKQDIATTLLHIDTGLSDIEVSCRYKAPPCTMPPADDPCVGTQAS--MCRQDARCGVRYISDDPSYVQ------------GTTTSTDNGCIGTESYCACPAGFTGRRCERKCKKGQTACGYEVISYHSKGFTPNDICCARNQ----------VCMRVAERFGFKTLCLPEGHPNDSGTXXXXXXXXXXXXXXXXXXXXXKKCTLNP---------CQNGGRCVNLNEYQQDQYGAYVCRCAKGFHGALCQFKDK 311
            A A+  LDIGCN+GVLTVTQ+DMGAGLCP+LVCCPKNCPLCA+RANCLK+A +PSCCP++DIA TL  IDTGLSDIEVSCRYKAPPCTMPPADDPCVG      +C ++ARCGVRY+SDDP YVQ            GTTTSTDNGCIGTE YC C    TG RCERKCKKGQTACGYE   Y SK F PNDI  ARN           VC RV E++GF T CLP+GHP                          KKC+ +P         CQNGG+CVN+N  Q  QY AY+C CAKGFHG LCQ+KDK
Sbjct:  212 AAASQRLDIGCNRGVLTVTQVDMGAGLCPLLVCCPKNCPLCANRANCLKNAKNPSCCPEKDIAATLQRIDTGLSDIEVSCRYKAPPCTMPPADDPCVGQHGDRVVCLRNARCGVRYVSDDPGYVQEDLAYYALGGVQGTTTSTDNGCIGTEFYCECAKDVTGSRCERKCKKGQTACGYEFDPYRSKDFRPNDI--ARNAPMSGYRHTVLVCERVGEKYGFTTKCLPKGHP--------------------------KKCSPSPWAHPQLPDPCQNGGKCVNINSNQVAQYAAYLCDCAKGFHGPLCQYKDK 494
[Close]
BLAST of jgi.p|Trimin1|349939 vs. uniprot
Match: A0A836CAP6_9STRA (EGF-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAP6_9STRA)

HSP 1 Score: 343 bits (880), Expect = 2.760e-116
Identity = 163/258 (63.18%), Postives = 183/258 (70.93%), Query Frame = 0 
Query:   56 MGAGLCPMLVCCPKNCPLCADRANCLKHADDPSCCPKQDIATTLLHIDTGLSDIEVSCRYKAPPCTMPPADDPCVGTQAS--MCRQDARCGVRYISDDPSYVQGTTTSTDNGCIGTESYCACPAGFTGRRCERKCKKGQTACGYEVISYHSKGFTPNDICCARNQVCMRVAERFGFKTLCLPEGHPNDSGTXXXXXXXXXXXXXXXXXXXXXKKCTLNPCQNGGRCVNLNEYQQDQYGAYVCRCAKGFHGALCQFKDK 311
            MGAGLCP+LVCCPKNCPLCA+RANCLK+ADDPSCCPK+DI T+L  +DTGLSDIEVSCRYKAPPCTMPPADDPCVG      +C ++ARCGVRY+SDDP YVQGT+TS DNGCIGTE YC CP G TGRRCERKCKKGQTACGY        GF P         VC+RV E +G+ T C+P+GHP                               +PCQNGG+CVNLN +QQ    AYVCRCAKGFHG LCQ+KDK
Sbjct:    1 MGAGLCPLLVCCPKNCPLCANRANCLKNADDPSCCPKKDITTSLQRVDTGLSDIEVSCRYKAPPCTMPPADDPCVGQHGDRVVCLRNARCGVRYVSDDPGYVQGTSTSADNGCIGTEFYCKCPEGVTGRRCERKCKKGQTACGY--------GFDP---------VCVRVGEHYGYTTKCVPKGHPEKCSPSAWAHPQLP-----------------DPCQNGGKCVNLNYWQQPYNAAYVCRCAKGFHGPLCQYKDK 224
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349939 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A836CCT3_9STRA1.630e-221100.00EGF-like domain-containing protein n=1 Tax=Tribone... [more]
A0A836CBA5_9STRA1.420e-15269.39EGF-like domain-containing protein n=1 Tax=Tribone... [more]
A0A836CBW0_9STRA1.190e-12460.77EGF-like domain-containing protein n=1 Tax=Tribone... [more]
A0A836CAP6_9STRA2.760e-11663.18EGF-like domain-containing protein n=1 Tax=Tribone... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000742EGF-like domainSMARTSM00181egf_5coord: 128..185
e-value: 15.0
score: 14.1
coord: 267..307
e-value: 5.7E-5
score: 32.5
IPR000742EGF-like domainPFAMPF00008EGFcoord: 268..304
e-value: 1.3E-6
score: 28.6
IPR000742EGF-like domainPROSITEPS00022EGF_1coord: 295..306
IPR000742EGF-like domainPROSITEPS00022EGF_1coord: 173..184
IPR000742EGF-like domainPROSITEPS01186EGF_2coord: 295..306
IPR000742EGF-like domainPROSITEPS50026EGF_3coord: 264..307
score: 18.066399
NoneNo IPR availableGENE3D2.10.25.10Laminincoord: 263..311
e-value: 2.2E-10
score: 42.1
NoneNo IPR availableCDDcd00054EGF_CAcoord: 269..307
e-value: 4.65664E-4
score: 35.305
NoneNo IPR availableSUPERFAMILY57196EGF/Laminincoord: 265..308

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_52contigContig_52:139720..146072 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349939mRNA_9920Tribonema minus UTEX_B_3156 mRNAContig_52 139720..146072 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|349939|estExt_Genemark1.C_Ctg_520020 ID=Trimin1|349939|estExt_Genemark1.C_Ctg_520020|Name=jgi.p|Trimin1|349939|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=312bp
MQTSLMSLALMLAPLLLCGAIEPPERVLPSQSLAEAAAGLDIGCNKGVLT
VTQLDMGAGLCPMLVCCPKNCPLCADRANCLKHADDPSCCPKQDIATTLL
HIDTGLSDIEVSCRYKAPPCTMPPADDPCVGTQASMCRQDARCGVRYISD
DPSYVQGTTTSTDNGCIGTESYCACPAGFTGRRCERKCKKGQTACGYEVI
SYHSKGFTPNDICCARNQVCMRVAERFGFKTLCLPEGHPNDSGTVCVRVA
ERYGFKTRCLPKGHPKKCTLNPCQNGGRCVNLNEYQQDQYGAYVCRCAKG
FHGALCQFKDK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000742EGF-like_dom