Trimin1|349879|estExt_Genemark1.C_Ctg_510006 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|349879
Unique NameTrimin1|349879|estExt_Genemark1.C_Ctg_510006
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length208
Homology
BLAST of jgi.p|Trimin1|349879 vs. uniprot
Match: A0A836CCX0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCX0_9STRA)

HSP 1 Score: 416 bits (1068), Expect = 6.040e-147
Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 0
Query:    1 MAAGKHSKASTSSGTGKGFGKSQFGAPPPVADTALWEREYKAFIRRCGAYVCSLSWQAYEKMGRGAVYSNYDGGKAAGTLSEADEKLGGIPSMFCPLHEFEAMVPGAAAKGEHNDLDQIIQRIKQYDPTKEFVVVFQAGGVCGADICSPSIPPPDVAKQVEAAIDIEAAARTQRVAMGADGRLGITYGAEPSVAGGTSIADAEWRLD 207
            MAAGKHSKASTSSGTGKGFGKSQFGAPPPVADTALWEREYKAFIRRCGAYVCSLSWQAYEKMGRGAVYSNYDGGKAAGTLSEADEKLGGIPSMFCPLHEFEAMVPGAAAKGEHNDLDQIIQRIKQYDPTKEFVVVFQAGGVCGADICSPSIPPPDVAKQVEAAIDIEAAARTQRVAMGADGRLGITYGAEPSVAGGTSIADAEWRLD
Sbjct:    1 MAAGKHSKASTSSGTGKGFGKSQFGAPPPVADTALWEREYKAFIRRCGAYVCSLSWQAYEKMGRGAVYSNYDGGKAAGTLSEADEKLGGIPSMFCPLHEFEAMVPGAAAKGEHNDLDQIIQRIKQYDPTKEFVVVFQAGGVCGADICSPSIPPPDVAKQVEAAIDIEAAARTQRVAMGADGRLGITYGAEPSVAGGTSIADAEWRLD 207          
BLAST of jgi.p|Trimin1|349879 vs. uniprot
Match: D8LKQ0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKQ0_ECTSI)

HSP 1 Score: 152 bits (383), Expect = 7.590e-42
Identity = 77/162 (47.53%), Postives = 102/162 (62.96%), Query Frame = 0
Query:   17 KGFGKSQFGAPPPVADTA------------------LWEREYKAFIRRCGAYVCSLSWQAYEKMGRGAVYSNYDGGKAAGTLSEADEKLGGIPSMFCPLHEFEAMVPGAAAKGEHNDLDQIIQRIKQYDPTKEFVVVFQAGGVCGADICSPSIPPPDVAKQV 160
            KGFGKS     P  A T                    WE+EYKA+I+R G Y+CS+SW+ +++MGRGA+++NYD  +    L+E D K GGIPSM+ PL EFE+M       GE +DL QI++R+K Y P +EFVVVFQA GV GADI  P++ PP++AK V
Sbjct:  107 KGFGKSVEPPSPAPATTGGEEGGGKAPGSEGLSGVGSWEKEYKAYIKRTGQYLCSMSWEGHQEMGRGAIFANYDDARKEDKLNETD-KFGGIPSMYVPLTEFESMKAAGQEAGEEDDLGQIVRRVKDYRPEREFVVVFQAAGVMGADIVRPNVSPPEMAKHV 267          
BLAST of jgi.p|Trimin1|349879 vs. uniprot
Match: A0A7S2WW30_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WW30_9STRA)

HSP 1 Score: 111 bits (277), Expect = 6.140e-27
Identity = 57/133 (42.86%), Postives = 83/133 (62.41%), Query Frame = 0
Query:   26 APPPVADTALWEREYKAFIRRCGAYVCSLSWQAYEKMGRGAVYSNYDGGKAAGTLSEADEKLGGIPSMFCPLHEFEAMVPGAAAKGEHNDLDQIIQRIKQYDPTKEFVVVFQAGGVCGADICSPSIPPPDVAK 158
            +P   +    WE++YK+ + R G  + ++SW  +EKMGRG + +NYD   AA   +E+D K G IPSM+ P  + +A     AA GE +  DQI  R++ YDP +EFVVVF A G+ G D+ +P IPPP+V +
Sbjct:   51 SPGDASVQERWEKQYKSMLARIGEDLTAMSWDGFEKMGRGVILANYDNVTAA---TESD-KYGSIPSMYVPEAQIKAGQINLAA-GEESSFDQIASRLESYDPEREFVVVFHAEGLMGTDVVTPCIPPPEVCR 178          
BLAST of jgi.p|Trimin1|349879 vs. uniprot
Match: A0A7S3EJF2_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EJF2_9RHOD)

HSP 1 Score: 97.4 bits (241), Expect = 5.400e-22
Identity = 51/135 (37.78%), Postives = 80/135 (59.26%), Query Frame = 0
Query:   17 KGFGKSQFGAPP-PVADTA----LWEREYKAFIRRCGAYVCSLSWQAYEKMGRGAVYSNYDGGKAAGTLSEADEKLGGIPSMFCPLHEFEAMVPGAAAKGEHNDLDQIIQRIKQYDPTKEFVVVFQAGGVCGADI 146
            KGFGKS+  A   P A +A    +W++EYKAF++R G  +C++ +  Y ++GRGAV++NY   +A   +    +    +PSM+ P+ +         ++G   D+  I  R+ +YDP K+FVVVF+  GV GADI
Sbjct:   38 KGFGKSRSSADEIPQAQSAGQVGVWQKEYKAFLKRNGKDICAMCYDGYRRLGRGAVFANYS--EAMDKVESDIDLAQSVPSMYVPMDKLRESASRRPSQG--GDMKHITDRVARYDPEKQFVVVFECNGVMGADI 168          
BLAST of jgi.p|Trimin1|349879 vs. uniprot
Match: A0A7S0BK00_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BK00_9RHOD)

HSP 1 Score: 82.4 bits (202), Expect = 2.510e-16
Identity = 47/128 (36.72%), Postives = 68/128 (53.12%), Query Frame = 0
Query:   17 KGFGKSQFGA------PPPVADTALWEREYKAFIRRCGAYVCSLSWQAYEKMGRGAVYSNYDGGKAAGTLSEADEKLG-GIPSMFCPLHEFEAMVPGAAAKGEHNDLDQIIQRIKQYDPTKEFVVVFQ 137
            KGFGK    +      P        WE EYKAF+ R G  +CS+ +  Y ++GRGAV++NY     A   +E+D  L   IPSM+ P+ + +       ++G   DL  I  R+  Y+P K+FVVVF+
Sbjct:   38 KGFGKKNQSSEDKVPNPQSAGQVGAWEIEYKAFLNRNGRDICSMCYDGYRRLGRGAVFANYS---KAMDKAESDIDLAQSIPSMYVPMDKLKENASRRPSQG--GDLKHITDRVANYNPEKQFVVVFE 160          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349879 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A836CCX0_9STRA6.040e-147100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LKQ0_ECTSI7.590e-4247.53Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2WW30_9STRA6.140e-2742.86Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3EJF2_9RHOD5.400e-2237.78Hypothetical protein (Fragment) n=1 Tax=Rhodosorus... [more]
A0A7S0BK00_9RHOD2.510e-1636.72Hypothetical protein (Fragment) n=1 Tax=Rhodosorus... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..23
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..19

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_51contigContig_51:85472..91980 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349879mRNA_8762Tribonema minus UTEX_B_3156 mRNAContig_51 85384..92741 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|349879|estExt_Genemark1.C_Ctg_510006 ID=Trimin1|349879|estExt_Genemark1.C_Ctg_510006|Name=jgi.p|Trimin1|349879|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=208bp
MAAGKHSKASTSSGTGKGFGKSQFGAPPPVADTALWEREYKAFIRRCGAY
VCSLSWQAYEKMGRGAVYSNYDGGKAAGTLSEADEKLGGIPSMFCPLHEF
EAMVPGAAAKGEHNDLDQIIQRIKQYDPTKEFVVVFQAGGVCGADICSPS
IPPPDVAKQVEAAIDIEAAARTQRVAMGADGRLGITYGAEPSVAGGTSIA
DAEWRLD*
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