Trimin1|349615|estExt_Genemark1.C_Ctg_460051 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|349615
Unique NameTrimin1|349615|estExt_Genemark1.C_Ctg_460051
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length426
Homology
BLAST of jgi.p|Trimin1|349615 vs. uniprot
Match: A0A835Z128_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z128_9STRA)

HSP 1 Score: 928 bits (2399), Expect = 0.000e+0
Identity = 425/425 (100.00%), Postives = 425/425 (100.00%), Query Frame = 0
Query:    1 MSFVHRYTEAECRVEARTLTARLNDESQNYFEFPSDAYLSCAIKNPKTDLCILRPAQDPCSPNPCKNGATCGVSYIADSTRCKRPVAQCRCAEVGSYVGATCARGCAANRAACGRSFSGYNGNSFTVNDKCCRPSEACLVVPGKYDDWRTECIPKVRPASCAPNPCKNGGTCDVVDYYGDRSIYTCDCAAGWTGSFSAATCGTGTKVTVQQKFGAGTCSLNVCCPRGLTAQQCKDGAKQFALDLTTNDENCYQFPSDVDVSCNVKDPSKSFCLLHPSPDPCSPNPCKHGARCTLSYTADSQGCHGAQVQCHCAEIGNYAGKLCGVTCAPDTAPCGRAYYDYDSNGFKTNDRCCKPSEACVRAPGKYGWFTVCVPKARPLSCDPNPCKNGGSCDTIDYYGDSNVHVCSCTSGWTGALCSTPNRPRV 425
            MSFVHRYTEAECRVEARTLTARLNDESQNYFEFPSDAYLSCAIKNPKTDLCILRPAQDPCSPNPCKNGATCGVSYIADSTRCKRPVAQCRCAEVGSYVGATCARGCAANRAACGRSFSGYNGNSFTVNDKCCRPSEACLVVPGKYDDWRTECIPKVRPASCAPNPCKNGGTCDVVDYYGDRSIYTCDCAAGWTGSFSAATCGTGTKVTVQQKFGAGTCSLNVCCPRGLTAQQCKDGAKQFALDLTTNDENCYQFPSDVDVSCNVKDPSKSFCLLHPSPDPCSPNPCKHGARCTLSYTADSQGCHGAQVQCHCAEIGNYAGKLCGVTCAPDTAPCGRAYYDYDSNGFKTNDRCCKPSEACVRAPGKYGWFTVCVPKARPLSCDPNPCKNGGSCDTIDYYGDSNVHVCSCTSGWTGALCSTPNRPRV
Sbjct:    1 MSFVHRYTEAECRVEARTLTARLNDESQNYFEFPSDAYLSCAIKNPKTDLCILRPAQDPCSPNPCKNGATCGVSYIADSTRCKRPVAQCRCAEVGSYVGATCARGCAANRAACGRSFSGYNGNSFTVNDKCCRPSEACLVVPGKYDDWRTECIPKVRPASCAPNPCKNGGTCDVVDYYGDRSIYTCDCAAGWTGSFSAATCGTGTKVTVQQKFGAGTCSLNVCCPRGLTAQQCKDGAKQFALDLTTNDENCYQFPSDVDVSCNVKDPSKSFCLLHPSPDPCSPNPCKHGARCTLSYTADSQGCHGAQVQCHCAEIGNYAGKLCGVTCAPDTAPCGRAYYDYDSNGFKTNDRCCKPSEACVRAPGKYGWFTVCVPKARPLSCDPNPCKNGGSCDTIDYYGDSNVHVCSCTSGWTGALCSTPNRPRV 425          
BLAST of jgi.p|Trimin1|349615 vs. uniprot
Match: A0A835YK89_9STRA (EGF-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK89_9STRA)

HSP 1 Score: 404 bits (1039), Expect = 2.320e-138
Identity = 177/224 (79.02%), Postives = 198/224 (88.39%), Query Frame = 0
Query:  197 SAATCGTGTKVTVQQKFGAGTCSLNVCCPRGLTAQQCKDGAKQFALDLTTNDENCYQFPSDVDVSCNVKDPSKSFCLLHPSPDPCSPNPCKHGARCTLSYTADSQGCHGAQVQCHCAEIGNYAGKLCGVTCAPDTAPCGRAYYDYDSNGFKTNDRCCKPSEACVRAPGKYGWFTVCVPKARPLSCDPNPCKNGGSCDTIDYYGDSNVHVCSCTSGWTGALCSTP 420
            +AATCGTGTKVTVQQ+FGAGTC L+VCCP+G TAQQCKDGAK+ A  L TNDENCYQFPSDV+VSCNVK+PSKSFCLLHPSPDPCSPNPCKH ARCTLSYTA+++GC+G QVQCHCAEIGNYAGKLCG+TCAPD APCGR++YDYDSN F+TN +CCKPSEACVR P KYGW T C+PKARP SCDPNPCK+GG C    Y GD+N++VC C SGWTGALC  P
Sbjct:   18 AAATCGTGTKVTVQQQFGAGTCPLDVCCPQGHTAQQCKDGAKELAQLLPTNDENCYQFPSDVNVSCNVKNPSKSFCLLHPSPDPCSPNPCKHSARCTLSYTANARGCNGPQVQCHCAEIGNYAGKLCGITCAPDAAPCGRSFYDYDSNDFETNHKCCKPSEACVRMPSKYGWITDCLPKARPTSCDPNPCKHGGWCALFPYTGDANIYVCVCASGWTGALCGIP 241          
BLAST of jgi.p|Trimin1|349615 vs. uniprot
Match: A0A835YR23_9STRA (EGF-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR23_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 1.290e-16
Identity = 57/226 (25.22%), Postives = 80/226 (35.40%), Query Frame = 0
Query:  201 CGTGTKVTVQQKFGAGTCSLNVCCPRGL----TAQQCKDG----AKQFALDLTTNDENCYQFPSDVDVSCNVKDPSKSFCLLHPSPDPCSPNPCKHGARCTLSYTADSQGCHGAQVQCHCAEIGNYAGKLCGVTCAPDTAPCGRAYYDYDSNGFKTNDRCCKPSEACVRAPGKYGWFTVCVPKARPLSCDPNPCKNGGSCDTIDYYGDSNVHVCSCTSGWTGALCS 418
            C  G + T+      G+C + VCCP       T+  C       A+Q A  L  N E   + PSDV+ SC  ++P                                                       C +                       N +CC  +  C+R  GKYGW T C PK RP S         G+C T++YYGD ++  C+C +GWTG+LC+
Sbjct:   30 CAGGVQATISLSLYGGSCPVKVCCPSSCGQCDTSADCSGSSDCCAQQIASVLADNSEEFCRNPSDVNNSCTNREPP------------------------------------------------------CIMXXXXXXXXXXXXXXXXXXXXXTANTKCCPDNTVCLRVEGKYGWTTDCFPKDRPTSXXXXXXXXXGTCATVNYYGDGSIKRCNCATGWTGSLCT 201          
BLAST of jgi.p|Trimin1|349615 vs. uniprot
Match: A0A820REP9_9BILA (Hypothetical protein n=1 Tax=Rotaria socialis TaxID=392032 RepID=A0A820REP9_9BILA)

HSP 1 Score: 67.8 bits (164), Expect = 1.870e-8
Identity = 85/331 (25.68%), Postives = 118/331 (35.65%), Query Frame = 0
Query:  161 CAPNPCKNGGTCDVVDYYGDRSIYTCDCAAGWTGSFSAATCGTGTKVTVQQKFGAGTC----SLN-VC-CPRGLTAQQCKDGAKQFALDLTTNDENCYQFPSDVDVSC-----------------NVKDP--------------------------------SKSFCLL---HPSPDPCSPNPCKHGARCTLSYTADSQGCHGAQVQCHCAE--IGNYAGKLCGVTCAPDTAPCGRAYYDYDSNGFKTNDRCC----KPSEACVRAPGKYGWFTVCVPKARPLSCDPNPCKNGGSC-------DTIDY-YGDSNVHVCSCTSGWTGALCST 419
            C  N C+ GG C+++      +  TC C  G  G      C   +K      +  GTC    +L+ VC CP   T + C+        D   ND  C Q P+    +C                 N K P                                + SF +    H     C  NPC++   C ++ TA ++G       C C E  IG+Y   L   T         + Y  Y S+G   ND  C    K +  C   P   G  T C    R  SC+PNPCKNGG+C         I+Y +G    + C C +G+ G  C +
Sbjct:  109 CQTNDCR-GGDCEIISLPNGLTKKTCHCIQGVCGETCQRLCNATSKCDAHPCWFGGTCVDVANLDYVCLCPPNHTGKDCRT-LLSCQTDSCHNDGTCIQTPNGARCNCPENFRGDYCQYTTAAKVNKKAPPTQSRPQNNQDIIAAIAAISSSNTNNAPVIQRTNSFVVTMGDHAKFVFCLTNPCENEGTCFVTNTATTKGI------CVCREGFIGDYCEHLHNKTSTEV-----QGYRSYCSSGPCLNDGVCIEDGKSNGYCRCQPEFRG--TYCEVVIRTYSCNPNPCKNGGTCVLLENNQGEINYKFGVCAANKCVCKTGFAGPRCDS 424          
BLAST of jgi.p|Trimin1|349615 vs. uniprot
Match: UPI001425A810 (neurogenic locus notch homolog protein 1-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI001425A810)

HSP 1 Score: 58.2 bits (139), Expect = 2.470e-5
Identity = 84/337 (24.93%), Postives = 120/337 (35.61%), Query Frame = 0
Query:  161 CAPNPCKNGGTCDVVDYYGDRSIYTCDCAAGWTGS-----FSAATCGTGTKVT----------VQQKF----GAGTCSL----------------NVCCPRGLTAQQCKDG--AKQFALDLTTNDENCYQFPSDVDVSCNVKDPSKSF--CLLH---PSPDP---CSPNPCKHGARCTLSYTADSQGCHGAQVQCHCAEIGNYAGKLCGVTCAPDTAPC---GRAYYDYDSNGFK------TNDRCCKPSEACVRAPGK--------------------YGWFTVCV-----PKARPLSCDPNPCKNGGSCDTIDYYGDSNVHVCSCTSGWTGALCS 418
            C+ +PC NGG C     +     YTC C   + GS          C  G +             QQ      G  TC +                N CCP     ++ KDG   +    D+ T ++ C       DV+C   D    F  C L    P  +P   C  +PC++G  C    +          + C C+    + GK C +   PD  PC    R Y D +S  F+       ND   K  + C   PG+                    +G    C      P+ R +SC+  PCKNGG+C+   Y     ++ C C  G+TG  C+
Sbjct:   71 CSSSPCLNGGMC-----FRKNDYYTCICPRNYNGSECQNIVPDDVCYDGERTLDNGETTFNDICQQMCECNDGVVTCDVTDSCPEPACTNPVYLPNNCCPVCWPPEE-KDGFCPETSFSDIGTCEDTCQH-----DVNC-TGDQKCCFNGCGLSCTDPQSEPTTLCDQSPCQNGGTCIDILST--------VIMCQCSP--GFHGKYCEI---PDGKPCYYGDRWYRDGESERFQHCFDCVCNDGFFKCYDICAEKPGECPEGHDLNIDIYECDVDADCHGDEKCCTGACSQPQQRFISCEDEPCKNGGTCEG-SYTLRPLLYTCHCADGYTGNNCN 381          
BLAST of jgi.p|Trimin1|349615 vs. uniprot
Match: UPI001403E209 (lactadherin isoform X1 n=4 Tax=Amblyraja radiata TaxID=386614 RepID=UPI001403E209)

HSP 1 Score: 57.0 bits (136), Expect = 4.060e-5
Identity = 38/143 (26.57%), Postives = 55/143 (38.46%), Query Frame = 0
Query:  280 PCSPNPCKHGARCTLSYTADSQGCHGAQVQCHCAEIGNYAGKLCGVTCAPDTA--PCGRAYYDYDSNGFKTNDRCCKPSEACVRAPGKYGWFTVCVPKARPLSCDPNPCKNGGSCDTIDYYGDS-NVHVCSCTSGWTGALCST 419
            PC PNPC++G  C    ++D           +C  +  + GK+C        A  P      D   N   T  R   P                         C PNPC+NGG C++I   GD+ + ++C C +G+ G  C T
Sbjct:   23 PCKPNPCQNGGSCLAGISSDPY---------YCICMDGFTGKVCAEVEQGSGAEEPTVYTLEDIRYNDVTTYSRLSGP-------------------------CSPNPCQNGGLCESISRRGDAFSEYICKCPTGFQGVHCQT 131          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349615 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A835Z128_9STRA0.000e+0100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YK89_9STRA2.320e-13879.02EGF-like domain-containing protein n=1 Tax=Tribone... [more]
A0A835YR23_9STRA1.290e-1625.22EGF-like domain-containing protein n=1 Tax=Tribone... [more]
A0A820REP9_9BILA1.870e-825.68Hypothetical protein n=1 Tax=Rotaria socialis TaxI... [more]
UPI001425A8102.470e-524.93neurogenic locus notch homolog protein 1-like n=1 ... [more]
UPI001403E2094.060e-526.57lactadherin isoform X1 n=4 Tax=Amblyraja radiata T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000742EGF-like domainSMARTSM00181egf_5coord: 160..202
e-value: 5.7E-4
score: 29.2
coord: 280..324
e-value: 35.0
score: 9.8
coord: 59..103
e-value: 42.0
score: 8.9
coord: 380..418
e-value: 0.087
score: 21.9
IPR000742EGF-like domainPFAMPF00008EGFcoord: 381..415
e-value: 2.6E-5
score: 24.4
coord: 161..195
e-value: 1.2E-7
score: 31.9
IPR000742EGF-like domainPROSITEPS00022EGF_1coord: 406..417
IPR000742EGF-like domainPROSITEPS01186EGF_2coord: 406..417
IPR000742EGF-like domainPROSITEPS50026EGF_3coord: 277..324
score: 8.798818
IPR000742EGF-like domainPROSITEPS50026EGF_3coord: 377..418
score: 15.059276
IPR000742EGF-like domainPROSITEPS50026EGF_3coord: 157..198
score: 13.868856
NoneNo IPR availableGENE3D2.10.25.10Laminincoord: 377..423
e-value: 1.1E-8
score: 36.4
NoneNo IPR availableGENE3D2.10.25.10Laminincoord: 155..206
e-value: 2.9E-9
score: 38.4
NoneNo IPR availableSUPERFAMILY57196EGF/Laminincoord: 160..196
NoneNo IPR availableSUPERFAMILY57196EGF/Laminincoord: 380..419

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_46contigContig_46:320112..324794 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349615mRNA_4596Tribonema minus UTEX_B_3156 mRNAContig_46 319462..324794 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|349615|estExt_Genemark1.C_Ctg_460051 ID=Trimin1|349615|estExt_Genemark1.C_Ctg_460051|Name=jgi.p|Trimin1|349615|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=426bp
MSFVHRYTEAECRVEARTLTARLNDESQNYFEFPSDAYLSCAIKNPKTDL
CILRPAQDPCSPNPCKNGATCGVSYIADSTRCKRPVAQCRCAEVGSYVGA
TCARGCAANRAACGRSFSGYNGNSFTVNDKCCRPSEACLVVPGKYDDWRT
ECIPKVRPASCAPNPCKNGGTCDVVDYYGDRSIYTCDCAAGWTGSFSAAT
CGTGTKVTVQQKFGAGTCSLNVCCPRGLTAQQCKDGAKQFALDLTTNDEN
CYQFPSDVDVSCNVKDPSKSFCLLHPSPDPCSPNPCKHGARCTLSYTADS
QGCHGAQVQCHCAEIGNYAGKLCGVTCAPDTAPCGRAYYDYDSNGFKTND
RCCKPSEACVRAPGKYGWFTVCVPKARPLSCDPNPCKNGGSCDTIDYYGD
SNVHVCSCTSGWTGALCSTPNRPRV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000742EGF-like_dom