Trimin1|349577|estExt_Genemark1.C_Ctg_450105 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|349577
Unique Name	Trimin1\|349577\|estExt_Genemark1.C_Ctg_450105
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	759

Homology

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BLAST of jgi.p|Trimin1|349577 vs. uniprot
Match: A0A835YVY6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVY6_9STRA)

HSP 1 Score: 1236 bits (3198), Expect = 0.000e+0
Identity = 758/758 (100.00%), Postives = 758/758 (100.00%), Query Frame = 0

Query:    1 MAAKASQAQLSVLHAKVLALRPVCQVVSALATSGSSCQLAKPTAGMRTTTGQARPQNFAWNVDHGNSSGCDEDNDGLESGYGSDVENQDWKQVWSERFKKGPLRTDYQAHFSWPPATAYSSPVKPPGAPPXXXXXXXXXKTAFAHARAGAAARSLDQHDASSIRGQRVRPQGSVADVPSSALRGATAGXXXXXXXXXXDGDVEEQRGEAGDAHLTPLPARAWGGAAGEGAAAAAAAPEQAVRQKGAGDPTARQDNVAYLLGEEGARPPPSPARSGRAEAAQPERDDVRQLLDDWSQRASPLHTGRREPLQRAARAKRHGTDGRPLHDGGPQRSAMYTAQGERACATSCPGGAHGEREEDSVGALLHARARLPPXXXXXXXTQLGAFAASVDRAQAAVKGRDLAVLCALPRPPAAVRALVHGVVSLLAPHVRMRWEELRTHVLRNGYNFARLLDGFNKDAPAVTPAALAFTTQRWAQPDFISGIATAARGLATWLQALHAYAAYKAGPTAALPLPPPMRAAPQPLTPAAAXXGNAAAARGVRPVMTADAARRLAQEXXXXXXXXXXXXXSAVPAAGGPMAATPQHSVAGSSRMSAYGRGTPMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRAAAVRARIQAAASVAGEEFAESVCGAGSVVDPSVLSQSGWRGSHGGSGAFEALKLARRRNELARKNAARAAARAEDLRNPLLANVRYPVVRTRPQTEYMARYRWVDC 758
            MAAKASQAQLSVLHAKVLALRPVCQVVSALATSGSSCQLAKPTAGMRTTTGQARPQNFAWNVDHGNSSGCDEDNDGLESGYGSDVENQDWKQVWSERFKKGPLRTDYQAHFSWPPATAYSSPVKPPGAPPXXXXXXXXXKTAFAHARAGAAARSLDQHDASSIRGQRVRPQGSVADVPSSALRGATAGXXXXXXXXXXDGDVEEQRGEAGDAHLTPLPARAWGGAAGEGAAAAAAAPEQAVRQKGAGDPTARQDNVAYLLGEEGARPPPSPARSGRAEAAQPERDDVRQLLDDWSQRASPLHTGRREPLQRAARAKRHGTDGRPLHDGGPQRSAMYTAQGERACATSCPGGAHGEREEDSVGALLHARARLPPXXXXXXXTQLGAFAASVDRAQAAVKGRDLAVLCALPRPPAAVRALVHGVVSLLAPHVRMRWEELRTHVLRNGYNFARLLDGFNKDAPAVTPAALAFTTQRWAQPDFISGIATAARGLATWLQALHAYAAYKAGPTAALPLPPPMRAAPQPLTPAAAXXGNAAAARGVRPVMTADAARRLAQEXXXXXXXXXXXXXSAVPAAGGPMAATPQHSVAGSSRMSAYGRGTPMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRAAAVRARIQAAASVAGEEFAESVCGAGSVVDPSVLSQSGWRGSHGGSGAFEALKLARRRNELARKNAARAAARAEDLRNPLLANVRYPVVRTRPQTEYMARYRWVDC
Sbjct:    1 MAAKASQAQLSVLHAKVLALRPVCQVVSALATSGSSCQLAKPTAGMRTTTGQARPQNFAWNVDHGNSSGCDEDNDGLESGYGSDVENQDWKQVWSERFKKGPLRTDYQAHFSWPPATAYSSPVKPPGAPPXXXXXXXXXKTAFAHARAGAAARSLDQHDASSIRGQRVRPQGSVADVPSSALRGATAGXXXXXXXXXXDGDVEEQRGEAGDAHLTPLPARAWGGAAGEGAAAAAAAPEQAVRQKGAGDPTARQDNVAYLLGEEGARPPPSPARSGRAEAAQPERDDVRQLLDDWSQRASPLHTGRREPLQRAARAKRHGTDGRPLHDGGPQRSAMYTAQGERACATSCPGGAHGEREEDSVGALLHARARLPPXXXXXXXTQLGAFAASVDRAQAAVKGRDLAVLCALPRPPAAVRALVHGVVSLLAPHVRMRWEELRTHVLRNGYNFARLLDGFNKDAPAVTPAALAFTTQRWAQPDFISGIATAARGLATWLQALHAYAAYKAGPTAALPLPPPMRAAPQPLTPAAAXXGNAAAARGVRPVMTADAARRLAQEXXXXXXXXXXXXXSAVPAAGGPMAATPQHSVAGSSRMSAYGRGTPMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRAAAVRARIQAAASVAGEEFAESVCGAGSVVDPSVLSQSGWRGSHGGSGAFEALKLARRRNELARKNAARAAARAEDLRNPLLANVRYPVVRTRPQTEYMARYRWVDC 758

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BLAST of jgi.p|Trimin1|349577 vs. uniprot
Match: D8LMZ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMZ6_ECTSI)

HSP 1 Score: 65.9 bits (159), Expect = 2.750e-7
Identity = 59/180 (32.78%), Postives = 76/180 (42.22%), Query Frame = 0

Query:  332 RSAMYTAQGERACATSCPG-GAHGEREE---DSVGALLHARARLPPXXXXXXXTQLGAFAASVDRAQAAVKGRDLAVLCALPRPPAAVRALVHGVVSLLAPHVRMRWEELRTHVLRNGYNFARLLDGFNKD-APAVTPAALAFTTQRWAQPDFISGIATAARGLATWLQALHAYAAYKAG 506
            +S +     E A  +S P  G  G+R     D VG LL  R    P         +    A+ DRA  A     L+ +C L  PP A R L+ G+V  L    R RW ++RTH+L N       L  FNKD A   + A L F       P  +  +A     +  WL ALH Y A K G
Sbjct:  484 QSILTEYMDEYAWPSSLPAPGRRGKRSGMGVDHVGRLLAGRRAEEPARKLPDPAVVARLGAAADRALGAGSLGHLSEMCRLKSPPLACRRLMLGLVIALGLRWR-RWSDIRTHLLGNKPELQGFLKRFNKDRAGLASTALLPFVEDPSLSPAEVRRVAACMVWVPRWLHALHDYLAVKEG 662

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|349577 vs. uniprot

BLAST of jgi.p|Trimin1|349577 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A835YVY6_9STRA	0.000e+0	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
D8LMZ6_ECTSI	2.750e-7	32.78	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 704..726
None	No IPR available	GENE3D	1.20.920.20		coord: 381..508 e-value: 2.8E-6 score: 28.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 118..341
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..82
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 551..652
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 278..292
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 307..325
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 119..141

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_45	contig	Contig_45:809996..816136 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|349577	mRNA_6145	Tribonema minus UTEX_B_3156	mRNA	Contig_45 809996..816447 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|349577|estExt_Genemark1.C_Ctg_450105 ID=Trimin1|349577|estExt_Genemark1.C_Ctg_450105|Name=jgi.p|Trimin1|349577|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=759bp
MAAKASQAQLSVLHAKVLALRPVCQVVSALATSGSSCQLAKPTAGMRTTT
GQARPQNFAWNVDHGNSSGCDEDNDGLESGYGSDVENQDWKQVWSERFKK
GPLRTDYQAHFSWPPATAYSSPVKPPGAPPPPLPPTPPPKTAFAHARAGA
AARSLDQHDASSIRGQRVRPQGSVADVPSSALRGATAGGGGSGGGAEEDG
DVEEQRGEAGDAHLTPLPARAWGGAAGEGAAAAAAAPEQAVRQKGAGDPT
ARQDNVAYLLGEEGARPPPSPARSGRAEAAQPERDDVRQLLDDWSQRASP
LHTGRREPLQRAARAKRHGTDGRPLHDGGPQRSAMYTAQGERACATSCPG
GAHGEREEDSVGALLHARARLPPPPPAPSPTQLGAFAASVDRAQAAVKGR
DLAVLCALPRPPAAVRALVHGVVSLLAPHVRMRWEELRTHVLRNGYNFAR
LLDGFNKDAPAVTPAALAFTTQRWAQPDFISGIATAARGLATWLQALHAY
AAYKAGPTAALPLPPPMRAAPQPLTPAAAAAGNAAAARGVRPVMTADAAR
RLAQEAATRRQGAAAAAPSAVPAAGGPMAATPQHSVAGSSRMSAYGRGTP
MGTPARPPLAPRSAAAAAAAPAAATPEQHASTPAAAPRSALRRPGTAPGR
RAAAVRARIQAAASVAGEEFAESVCGAGSVVDPSVLSQSGWRGSHGGSGA
FEALKLARRRNELARKNAARAAARAEDLRNPLLANVRYPVVRTRPQTEYM
ARYRWVDC*