Trimin1|349556|estExt_Genemark1.C_Ctg_450071 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|349556
Unique NameTrimin1|349556|estExt_Genemark1.C_Ctg_450071
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length363
Homology
BLAST of jgi.p|Trimin1|349556 vs. uniprot
Match: A0A835YSV4_9STRA (GB1/RHD3-type G domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSV4_9STRA)

HSP 1 Score: 679 bits (1751), Expect = 7.400e-246
Identity = 362/362 (100.00%), Postives = 362/362 (100.00%), Query Frame = 0
Query:    1 MVAAGGLEAPGEAGNDDECGSEPDFVLMHSVDAGSAAASAANSSADSGFFTMCVDLQALEVPRGASQDYLVVAITGCQGSGKSSLLNELFGSTFPVQEGKPRRTTMGCWVDLAEQHPSPPVLLLDMEGMEAVIINLWAHDVERGGEAGTSLFKVVYREAALAAAAAPPYLRPRRVLVALRDVEDSAQLVALVKTLKRAKADIDAELDTAAGAPRPASATAESDAAPMSGGSAEGGAAGAEEPLGGQKRGGIRAGSAGLQVEYLGMPHGRHRRAAFRAAAAELRGMLLSPVHPRYLWREKHKCNAREPLREAESAAGEGRAEGREQSPSAAALGEESRGELEGGEGGALGGGSSRWCRCSGRD 362
            MVAAGGLEAPGEAGNDDECGSEPDFVLMHSVDAGSAAASAANSSADSGFFTMCVDLQALEVPRGASQDYLVVAITGCQGSGKSSLLNELFGSTFPVQEGKPRRTTMGCWVDLAEQHPSPPVLLLDMEGMEAVIINLWAHDVERGGEAGTSLFKVVYREAALAAAAAPPYLRPRRVLVALRDVEDSAQLVALVKTLKRAKADIDAELDTAAGAPRPASATAESDAAPMSGGSAEGGAAGAEEPLGGQKRGGIRAGSAGLQVEYLGMPHGRHRRAAFRAAAAELRGMLLSPVHPRYLWREKHKCNAREPLREAESAAGEGRAEGREQSPSAAALGEESRGELEGGEGGALGGGSSRWCRCSGRD
Sbjct:    1 MVAAGGLEAPGEAGNDDECGSEPDFVLMHSVDAGSAAASAANSSADSGFFTMCVDLQALEVPRGASQDYLVVAITGCQGSGKSSLLNELFGSTFPVQEGKPRRTTMGCWVDLAEQHPSPPVLLLDMEGMEAVIINLWAHDVERGGEAGTSLFKVVYREAALAAAAAPPYLRPRRVLVALRDVEDSAQLVALVKTLKRAKADIDAELDTAAGAPRPASATAESDAAPMSGGSAEGGAAGAEEPLGGQKRGGIRAGSAGLQVEYLGMPHGRHRRAAFRAAAAELRGMLLSPVHPRYLWREKHKCNAREPLREAESAAGEGRAEGREQSPSAAALGEESRGELEGGEGGALGGGSSRWCRCSGRD 362          
BLAST of jgi.p|Trimin1|349556 vs. uniprot
Match: A0A7S2ZZA6_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZZA6_9RHOD)

HSP 1 Score: 77.8 bits (190), Expect = 2.100e-12
Identity = 52/146 (35.62%), Postives = 77/146 (52.74%), Query Frame = 0
Query:   68 DYLVVAITGCQGSGKSSLLNELFGSTFPV---QEGKPRRTTMGCWVDLAEQHPSPPVLLLDMEGMEA------------------------VIINLWAHDVERGGEAGTSLFKVVY---REAALAAAAAPPYLRPRRVLVALRDVE 183
            DY VVA+ GCQ SGKS+LLN +FG+ FPV    +   RRTT G W  +A    +P V+LLD+EG ++                        +++N+W HDV R   A   LF+VV+   ++A +    A      +R++VA+RD +
Sbjct:   30 DYGVVAVIGCQSSGKSTLLNRVFGTDFPVLDVNKAGRRRTTTGVWGAVARNQGNP-VVLLDVEGSDSRERGEGMHSFEARTALFSMALADVIVVNMWLHDVGRHQAANYDLFEVVFSQRKQAGIGQLGA----EKKRIVVAVRDFD 170          
BLAST of jgi.p|Trimin1|349556 vs. uniprot
Match: A0A2P6NS68_9EUKA (Protein SEY1 homolog n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NS68_9EUKA)

HSP 1 Score: 70.9 bits (172), Expect = 1.570e-9
Identity = 44/117 (37.61%), Postives = 58/117 (49.57%), Query Frame = 0
Query:   68 DYLVVAITGCQGSGKSSLLNELFGSTFPVQEGKPRRT--TMGCWVDLAEQHPSPP--VLLLDMEGM------------------------EAVIINLWAHDVERGGEAGTSLFKVVY 156
            DY VVAI GCQ SGKS+LLN LFG+TFPV E    RT  T G W+  A  + +    +L+ D+EG                         E +++N+W +DV R      SL K V+
Sbjct:   43 DYFVVAILGCQSSGKSTLLNLLFGTTFPVMEASEGRTQTTQGVWMGRARTNSAQQENILVFDVEGTDSRERGEAAASWERKSSLFALALSEVLLVNMWHNDVGRYNAGNISLLKTVF 159          
BLAST of jgi.p|Trimin1|349556 vs. uniprot
Match: A0A2P6V1Z3_9CHLO (Protein ROOT HAIR DEFECTIVE 3 homolog n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V1Z3_9CHLO)

HSP 1 Score: 69.7 bits (169), Expect = 3.460e-9
Identity = 43/119 (36.13%), Postives = 59/119 (49.58%), Query Frame = 0
Query:   65 ASQDYLVVAITGCQGSGKSSLLNELFGSTFPVQEGKPRR--TTMGCWVDLAEQHPSPPVLLLDMEGMEA------------------------VIINLWAHDVERGGEAGTSLFKVVYR 157
            A   Y VVAI G Q SGKS+LLN LFG++F   +    R  TT G W+  A +  +PP L+LD+EG +                         V++N+WA DV R   AG  L K +++
Sbjct:   38 AGLGYTVVAIMGPQSSGKSTLLNHLFGTSFEEMDALTGRSQTTRGIWLARAPKVTAPPTLVLDLEGSDGRERGEDDTSFERQSALFALAVADVVLVNMWAKDVGRESGAGKPLLKTIFQ 156          
BLAST of jgi.p|Trimin1|349556 vs. uniprot
Match: R7Q455_CHOCR (GB1/RHD3-type G domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q455_CHOCR)

HSP 1 Score: 68.9 bits (167), Expect = 4.300e-9
Identity = 51/151 (33.77%), Postives = 70/151 (46.36%), Query Frame = 0
Query:   71 VVAITGCQGSGKSSLLNELFGSTFPVQEGKP--RRTTMGCWVDLAEQHPSPPVLLLDMEGMEA------------------------VIINLWAHDVERGGEAGTSLFKVVYREAALAAAAAPPYLRPRRVLVALRDVEDSAQLVALVKTL 195
            VVA+ G QGSGKSSLLN LFG++FPV    P    TT G     A+   SP  + LD+EG ++                        +++N+W HDV R   +G +L   V+ EA       P   +   V V +RD +D   L  L  +L
Sbjct:   38 VVAVLGAQGSGKSSLLNNLFGTSFPVASRSPVTNATTKGIHASTADH--SPLTVALDVEGSDSRDRGRDGRAFQTRCAGFVAAIADVILLNMWYHDVGRFDASGYALLDAVFAEAIKNGDQDPDSFKTALVFV-VRDTDDDIDLSVLESSL 185          
BLAST of jgi.p|Trimin1|349556 vs. uniprot
Match: A0A7S0R8E5_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0R8E5_9CHLO)

HSP 1 Score: 68.9 bits (167), Expect = 4.610e-9
Identity = 48/155 (30.97%), Postives = 75/155 (48.39%), Query Frame = 0
Query:   68 DYLVVAITGCQGSGKSSLLNELFGSTFPVQEGKPRR--TTMGCWVDLAEQHPSPPVLLLDMEGMEA------------------------VIINLWAHDVERGGEAGTSLFKVVYREAALAAAAAPPYLRPRRVLVALRDVEDSAQLVALVKTLK 196
            DY VVAI G Q SGKS+LLN +FG+ F + +    R  TT G W+  A + P P  L++D+EG +                         +++N+W HD+ R   +G  L K ++ +  L   A  P  +   +L  +RD +    L  LV+T++
Sbjct:   44 DYQVVAIMGPQSSGKSTLLNHVFGTNFVMMDAMTGRSQTTKGIWLSTAPKLPEPLTLVMDLEGSDGRERGEDDTNFERQAALFALAVADILLVNIWCHDIGREQGSGKPLLKTIF-QVNLKLFAPEPNRKRTVLLFVIRD-KTRTPLEKLVETME 196          
BLAST of jgi.p|Trimin1|349556 vs. uniprot
Match: I0Z497_COCSC (Protein ROOT HAIR DEFECTIVE 3 homolog n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0Z497_COCSC)

HSP 1 Score: 68.6 bits (166), Expect = 7.120e-9
Identity = 41/121 (33.88%), Postives = 59/121 (48.76%), Query Frame = 0
Query:   63 RGASQDYLVVAITGCQGSGKSSLLNELFGSTFPVQEGKP--RRTTMGCWVDLAEQHPSPPVLLLDMEGMEA------------------------VIINLWAHDVERGGEAGTSLFKVVYR 157
            R     Y VVAITG Q SGKS+L+N LFG+TF   +     R+TT G W+   ++   P  L+LD+EG +                         +++N+WA DV R   AG  L K +++
Sbjct:   31 RDVGVGYQVVAITGPQSSGKSTLMNALFGTTFEEMDAMSGRRQTTKGIWLAKGQKIEEPSTLVLDLEGSDGRERGEDDNSFERQSSLFALAVADVLLVNMWAKDVGREAGAGKPLLKTIFQ 151          
BLAST of jgi.p|Trimin1|349556 vs. uniprot
Match: A0A8J9S5S0_9CHLO (Protein ROOT HAIR DEFECTIVE 3 homolog 1 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9S5S0_9CHLO)

HSP 1 Score: 68.2 bits (165), Expect = 9.480e-9
Identity = 41/121 (33.88%), Postives = 59/121 (48.76%), Query Frame = 0
Query:   63 RGASQDYLVVAITGCQGSGKSSLLNELFGSTFPVQEGKP--RRTTMGCWVDLAEQHPSPPVLLLDMEGMEA------------------------VIINLWAHDVERGGEAGTSLFKVVYR 157
            R     Y VVAITG Q SGKS+L+N LFG+TF   +     R+TT G W+   ++   P  L+LD+EG +                         +++N+WA DV R   AG  L K +++
Sbjct:   31 RDVGVGYQVVAITGPQSSGKSTLVNALFGTTFEEMDAMSGRRQTTKGIWLAKGQKIEEPATLVLDLEGSDGRERGEDDNSFERQSSLFALAVADVLLVNMWAKDVGREAGAGKPLLKTIFQ 151          
BLAST of jgi.p|Trimin1|349556 vs. uniprot
Match: D2UZE2_NAEGR (Predicted protein (Fragment) n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2UZE2_NAEGR)

HSP 1 Score: 65.1 bits (157), Expect = 2.910e-8
Identity = 34/103 (33.01%), Postives = 57/103 (55.34%), Query Frame = 0
Query:   63 RGASQDYLVVAITGCQGSGKSSLLNELFGSTFPVQEGKPRR--TTMGCWVDLAEQHPSPPVLLLDMEGM-------EAVIINLWAHDVERGGEAGTSLFKVVY 156
            RG   +Y ++++ G Q SGKS+LLN LFG+ FP  +    R   T+G  +  A +     +LL+D+EG        E +++N+W  D+ R   A  +L ++V+
Sbjct:   16 RGKGDNYNILSVFGPQSSGKSTLLNRLFGAGFPTMDASTGRYQVTLGVCMAKANKTLDKDILLMDLEGTDSKERVSEVLLVNMWMQDIGRYNAANLALLRIVF 118          
BLAST of jgi.p|Trimin1|349556 vs. uniprot
Match: A0A7S3DXX4_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chloropicon laureae TaxID=464258 RepID=A0A7S3DXX4_9CHLO)

HSP 1 Score: 63.2 bits (152), Expect = 2.950e-8
Identity = 41/120 (34.17%), Postives = 56/120 (46.67%), Query Frame = 0
Query:   65 ASQDYLVVAITGCQGSGKSSLLNELFGSTFPVQEGKPRR--TTMGCWVDLAEQHPSPPVLLLDMEGMEA------------------------VIINLWAHDVERGGEAGTSLFKVVYRE 158
            A  DY V+AI G Q SGKS+LLN +FG+ F   +    R  TT G W+  + +      L+LD+EG +                         ++INLW HDV R   +G  L K V +E
Sbjct:   30 AGLDYSVIAIMGPQSSGKSTLLNHVFGTAFREMDATAGRSQTTQGIWLACSPKLKDDKTLVLDLEGTDGRERGEDDTTFERQSALFALAVADVLLINLWHHDVGREQGSGKPLLKTVLQE 149          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349556 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YSV4_9STRA7.400e-246100.00GB1/RHD3-type G domain-containing protein n=1 Tax=... [more]
A0A7S2ZZA6_9RHOD2.100e-1235.62Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
A0A2P6NS68_9EUKA1.570e-937.61Protein SEY1 homolog n=1 Tax=Planoprotostelium fun... [more]
A0A2P6V1Z3_9CHLO3.460e-936.13Protein ROOT HAIR DEFECTIVE 3 homolog n=1 Tax=Micr... [more]
R7Q455_CHOCR4.300e-933.77GB1/RHD3-type G domain-containing protein n=1 Tax=... [more]
A0A7S0R8E5_9CHLO4.610e-930.97Hypothetical protein (Fragment) n=1 Tax=Chlamydomo... [more]
I0Z497_COCSC7.120e-933.88Protein ROOT HAIR DEFECTIVE 3 homolog n=1 Tax=Cocc... [more]
A0A8J9S5S0_9CHLO9.480e-933.88Protein ROOT HAIR DEFECTIVE 3 homolog 1 n=1 Tax=Co... [more]
D2UZE2_NAEGR2.910e-833.01Predicted protein (Fragment) n=1 Tax=Naegleria gru... [more]
A0A7S3DXX4_9CHLO2.950e-834.17Hypothetical protein (Fragment) n=1 Tax=Chloropico... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008803RHD3/Sey1PFAMPF05879RHD3coord: 76..129
e-value: 5.2E-8
score: 31.5
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3D3.40.50.300coord: 46..138
e-value: 2.4E-13
score: 51.8
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 57..142
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 306..346
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 210..251
IPR030386GB1/RHD3-type guanine nucleotide-binding (G) domainPROSITEPS51715G_GB1_RHD3coord: 66..152
score: 9.267196

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_45contigContig_45:567686..570022 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349556mRNA_6105Tribonema minus UTEX_B_3156 mRNAContig_45 567686..570022 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|349556|estExt_Genemark1.C_Ctg_450071 ID=Trimin1|349556|estExt_Genemark1.C_Ctg_450071|Name=jgi.p|Trimin1|349556|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=363bp
MVAAGGLEAPGEAGNDDECGSEPDFVLMHSVDAGSAAASAANSSADSGFF
TMCVDLQALEVPRGASQDYLVVAITGCQGSGKSSLLNELFGSTFPVQEGK
PRRTTMGCWVDLAEQHPSPPVLLLDMEGMEAVIINLWAHDVERGGEAGTS
LFKVVYREAALAAAAAPPYLRPRRVLVALRDVEDSAQLVALVKTLKRAKA
DIDAELDTAAGAPRPASATAESDAAPMSGGSAEGGAAGAEEPLGGQKRGG
IRAGSAGLQVEYLGMPHGRHRRAAFRAAAAELRGMLLSPVHPRYLWREKH
KCNAREPLREAESAAGEGRAEGREQSPSAAALGEESRGELEGGEGGALGG
GSSRWCRCSGRD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008803RHD3/Sey1
IPR027417P-loop_NTPase
IPR030386G_GB1_RHD3_dom