Trimin1|349476|estExt_Genemark1.C_Ctg_440022 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|349476
Unique Name	Trimin1\|349476\|estExt_Genemark1.C_Ctg_440022
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	1061

Homology

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BLAST of jgi.p|Trimin1|349476 vs. uniprot
Match: A0A835YSS1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSS1_9STRA)

HSP 1 Score: 1253 bits (3241), Expect = 0.000e+0
Identity = 1060/1060 (100.00%), Postives = 1060/1060 (100.00%), Query Frame = 0

Query:    1 MGEKGSSYDLFGVPHQDSGDEAMDDGSTDKVRSAAEALQLKYGLGRDTAEEKGEAPKAASARAAALRKSAGGGGADSILQLAEESHAAAEAALXXXXXXXXXEXXDXXXXXXXXXXXXXXXXXXXXRLRPNARAKLKRAKQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTERDSDGDIGMDAXXXXXXXXXXXXXXXXXXXXXXGGGEGMEEGGEXXXXXXXXXXXXVQYAVARQVGRDTAPEILALAKKRLSGWALKFTKPRMVVPDLPPEQPPMRDDYLELFGRHLLAEASFSETFGAKPAERLEGEDGKGEREGGGSSDEGGDLDLDFDTPSHSKSAPRQPRGRDDERGRTVVASNLPYTMCEVKYMRQIFEAVDDREGEESSVXXXXXXXXXXXXXXXXXSSMFEXXXXXXXXXSNYPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKDVIIHRHNIGNRASGFVTVVFTTAEAAHAAVKLNGMDVGGRAMYTKLVAPAARPFRPPSRYFLEPDGKAALAAFRRYRPYVHRHLHEVIITLGVGFVVISIDSRALLLVVAAALVDGRALLRESAPKGSSKVCIKCRQTGHFAKDCTAEASDIXXXXXXXXXXXXXXXXLDAVCRTCFTYGHKAHSXXXXXXXXXXXXXXXXXSCRNNENISTMLCFRCLLRGCGGDAAPCSNGRNERGLDLTLRAVIKDPPPVNAEGKPVYGPTPGTEKLRCITCGQVGHVRCGGVDADTLQQLRPYASCYGCGEMGHPNTECPALWPRGDHRSAQSAGRRSTSQQQRLQRRQSAPADLPRANSHIVFTEGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGYAPRGAYRGAPGEYDQPXXXXXXXXXLLPPHQQGFDFAHAPPMGYGAPVFRRDSGGGXXXXXXXXRSSYESYRGDRGDSYRRR 1060
            MGEKGSSYDLFGVPHQDSGDEAMDDGSTDKVRSAAEALQLKYGLGRDTAEEKGEAPKAASARAAALRKSAGGGGADSILQLAEESHAAAEAALXXXXXXXXXEXXDXXXXXXXXXXXXXXXXXXXXRLRPNARAKLKRAKQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTERDSDGDIGMDAXXXXXXXXXXXXXXXXXXXXXXGGGEGMEEGGEXXXXXXXXXXXXVQYAVARQVGRDTAPEILALAKKRLSGWALKFTKPRMVVPDLPPEQPPMRDDYLELFGRHLLAEASFSETFGAKPAERLEGEDGKGEREGGGSSDEGGDLDLDFDTPSHSKSAPRQPRGRDDERGRTVVASNLPYTMCEVKYMRQIFEAVDDREGEESSVXXXXXXXXXXXXXXXXXSSMFEXXXXXXXXXSNYPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKDVIIHRHNIGNRASGFVTVVFTTAEAAHAAVKLNGMDVGGRAMYTKLVAPAARPFRPPSRYFLEPDGKAALAAFRRYRPYVHRHLHEVIITLGVGFVVISIDSRALLLVVAAALVDGRALLRESAPKGSSKVCIKCRQTGHFAKDCTAEASDIXXXXXXXXXXXXXXXXLDAVCRTCFTYGHKAHSXXXXXXXXXXXXXXXXXSCRNNENISTMLCFRCLLRGCGGDAAPCSNGRNERGLDLTLRAVIKDPPPVNAEGKPVYGPTPGTEKLRCITCGQVGHVRCGGVDADTLQQLRPYASCYGCGEMGHPNTECPALWPRGDHRSAQSAGRRSTSQQQRLQRRQSAPADLPRANSHIVFTEGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGYAPRGAYRGAPGEYDQPXXXXXXXXXLLPPHQQGFDFAHAPPMGYGAPVFRRDSGGGXXXXXXXXRSSYESYRGDRGDSYRRR
Sbjct:    1 MGEKGSSYDLFGVPHQDSGDEAMDDGSTDKVRSAAEALQLKYGLGRDTAEEKGEAPKAASARAAALRKSAGGGGADSILQLAEESHAAAEAALXXXXXXXXXEXXDXXXXXXXXXXXXXXXXXXXXRLRPNARAKLKRAKQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTERDSDGDIGMDAXXXXXXXXXXXXXXXXXXXXXXGGGEGMEEGGEXXXXXXXXXXXXVQYAVARQVGRDTAPEILALAKKRLSGWALKFTKPRMVVPDLPPEQPPMRDDYLELFGRHLLAEASFSETFGAKPAERLEGEDGKGEREGGGSSDEGGDLDLDFDTPSHSKSAPRQPRGRDDERGRTVVASNLPYTMCEVKYMRQIFEAVDDREGEESSVXXXXXXXXXXXXXXXXXSSMFEXXXXXXXXXSNYPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKDVIIHRHNIGNRASGFVTVVFTTAEAAHAAVKLNGMDVGGRAMYTKLVAPAARPFRPPSRYFLEPDGKAALAAFRRYRPYVHRHLHEVIITLGVGFVVISIDSRALLLVVAAALVDGRALLRESAPKGSSKVCIKCRQTGHFAKDCTAEASDIXXXXXXXXXXXXXXXXLDAVCRTCFTYGHKAHSXXXXXXXXXXXXXXXXXSCRNNENISTMLCFRCLLRGCGGDAAPCSNGRNERGLDLTLRAVIKDPPPVNAEGKPVYGPTPGTEKLRCITCGQVGHVRCGGVDADTLQQLRPYASCYGCGEMGHPNTECPALWPRGDHRSAQSAGRRSTSQQQRLQRRQSAPADLPRANSHIVFTEGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGYAPRGAYRGAPGEYDQPXXXXXXXXXLLPPHQQGFDFAHAPPMGYGAPVFRRDSGGGXXXXXXXXRSSYESYRGDRGDSYRRR 1060

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|349476 vs. uniprot

BLAST of jgi.p|Trimin1|349476 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835YSS1_9STRA	0.000e+0	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 698..714 e-value: 0.0013 score: 28.0 coord: 838..852 e-value: 45.0 score: 1.0 coord: 720..736 e-value: 0.69 score: 12.2 coord: 866..882 e-value: 0.073 score: 18.2 coord: 757..773 e-value: 0.76 score: 11.9
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 721..735 score: 8.515406
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 699..712 score: 9.356029
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 867..881 score: 9.652719
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 444..611 e-value: 1.6E-8 score: 36.5
None	No IPR available	GENE3D	4.10.60.10		coord: 687..739 e-value: 7.7E-10 score: 40.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 881..1060
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 120..136
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 193..207
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 441..466
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 317..340
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 990..1008
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 894..910
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 250..264
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 414..434
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 411..466
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..297
None	No IPR available	PANTHER	PTHR46978	ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN	coord: 684..883
None	No IPR available	PANTHER	PTHR46978:SF1	ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN	coord: 684..883
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 564..626
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 831..882
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 693..736

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_44	contig	Contig_44:370101..389921 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|349476	mRNA_9081	Tribonema minus UTEX_B_3156	mRNA	Contig_44 370101..390473 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|349476|estExt_Genemark1.C_Ctg_440022 ID=Trimin1|349476|estExt_Genemark1.C_Ctg_440022|Name=jgi.p|Trimin1|349476|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=1061bp
MGEKGSSYDLFGVPHQDSGDEAMDDGSTDKVRSAAEALQLKYGLGRDTAE
EKGEAPKAASARAAALRKSAGGGGADSILQLAEESHAAAEAALAAAAAAA
AAEAADADANGEDNGAQRKGARKKKARLRPNARAKLKRAKQAAAAAAAAA
ERGDNSEDDDGEEEESEASGPPPRTAPPAAGKRRKKQKLDGAASDQSSRS
NSKSPVPMASLEAAAAEAAAAAAAAAAAAAAGMEVAEGGGGGAAKKPALS
KRAQQRERRRIAEAAAAAKALAASDNGGGGSTERDSDGDIGMDADVEMED
EGISVAAAATAALAVAGGGEGMEEGGEGEGGDGGEGGEGVQYAVARQVGR
DTAPEILALAKKRLSGWALKFTKPRMVVPDLPPEQPPMRDDYLELFGRHL
LAEASFSETFGAKPAERLEGEDGKGEREGGGSSDEGGDLDLDFDTPSHSK
SAPRQPRGRDDERGRTVVASNLPYTMCEVKYMRQIFEAVDDREGEESSVK
NMRQIFEAVDDREGEESSMFEAVTNRKGEESNYPRQMFEAVNDGEGQESS
MFEAVNHCEGAESSVKDVIIHRHNIGNRASGFVTVVFTTAEAAHAAVKLN
GMDVGGRAMYTKLVAPAARPFRPPSRYFLEPDGKAALAAFRRYRPYVHRH
LHEVIITLGVGFVVISIDSRALLLVVAAALVDGRALLRESAPKGSSKVCI
KCRQTGHFAKDCTAEASDILCGICAEKGHDKRDCPLDAVCRTCFTYGHKA
HSPLDAVCRLCSTYGHKAHSCRNNENISTMLCFRCLLRGCGGDAAPCSNG
RNERGLDLTLRAVIKDPPPVNAEGKPVYGPTPGTEKLRCITCGQVGHVRC
GGVDADTLQQLRPYASCYGCGEMGHPNTECPALWPRGDHRSAQSAGRRST
SQQQRLQRRQSAPADLPRANSHIVFTEGGAAAPAPPPHYRGGFPGGGGAF
NDDFGGGMSRHSSGASLARHSSGGGGGYAPRGAYRGAPGEYDQPPPPYGA
PPPLLPPHQQGFDFAHAPPMGYGAPVFRRDSGGGGGGGYGGGRSSYESYR
GDRGDSYRRR*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001878	Znf_CCHC
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf
IPR036875	Znf_CCHC_sf