Trimin1|348706|estExt_Genemark1.C_Ctg_300044 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|348706
Unique NameTrimin1|348706|estExt_Genemark1.C_Ctg_300044
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length507
Homology
BLAST of jgi.p|Trimin1|348706 vs. uniprot
Match: A0A836CEI1_9STRA (DEAD box helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEI1_9STRA)

HSP 1 Score: 822 bits (2123), Expect = 1.080e-297
Identity = 506/506 (100.00%), Postives = 506/506 (100.00%), Query Frame = 0
Query:    1 MSISDQPFASPASAPEATGEWSSLGLLPEVQGAVDNMGFATPSSIQRIAIPQITSGGNMVVAAATGSGKTLAYLLPVINALKSQEQLSDATVRKPGRPRALVLVPTRELAAQVLGVTKQVAHTAKVSSCGIFGGEDYGKQKRELAACQDVVVGSPGRLLKHRDQGTLFLSQVTHVVIDEVDTMLTQGFGPDITALVKPLMRRQGEDAVQFVLVSATVTAALRRLLEAGEFPKVRMVETRDVHRALPNMKHAMVDCKGRDKLSVLLEVLAQHGGSGSSAAAQAAARTLIFCNTVASARAVDHALRDAGVAAAAYHGEVPSAQRAAALAAFRAGSPPRLVATDVAARGLDLPEVGHVIMFDFPLNPVDYLHRSGRTARMGARGRVTSLLAKRDRVLAAAIEAAVLAGRPLDALTARRTDYLPGGKLAAKSGSRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGDDSTGVESSLMLVAF 506
            MSISDQPFASPASAPEATGEWSSLGLLPEVQGAVDNMGFATPSSIQRIAIPQITSGGNMVVAAATGSGKTLAYLLPVINALKSQEQLSDATVRKPGRPRALVLVPTRELAAQVLGVTKQVAHTAKVSSCGIFGGEDYGKQKRELAACQDVVVGSPGRLLKHRDQGTLFLSQVTHVVIDEVDTMLTQGFGPDITALVKPLMRRQGEDAVQFVLVSATVTAALRRLLEAGEFPKVRMVETRDVHRALPNMKHAMVDCKGRDKLSVLLEVLAQHGGSGSSAAAQAAARTLIFCNTVASARAVDHALRDAGVAAAAYHGEVPSAQRAAALAAFRAGSPPRLVATDVAARGLDLPEVGHVIMFDFPLNPVDYLHRSGRTARMGARGRVTSLLAKRDRVLAAAIEAAVLAGRPLDALTARRTDYLPGGKLAAKSGSRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGDDSTGVESSLMLVAF
Sbjct:    1 MSISDQPFASPASAPEATGEWSSLGLLPEVQGAVDNMGFATPSSIQRIAIPQITSGGNMVVAAATGSGKTLAYLLPVINALKSQEQLSDATVRKPGRPRALVLVPTRELAAQVLGVTKQVAHTAKVSSCGIFGGEDYGKQKRELAACQDVVVGSPGRLLKHRDQGTLFLSQVTHVVIDEVDTMLTQGFGPDITALVKPLMRRQGEDAVQFVLVSATVTAALRRLLEAGEFPKVRMVETRDVHRALPNMKHAMVDCKGRDKLSVLLEVLAQHGGSGSSAAAQAAARTLIFCNTVASARAVDHALRDAGVAAAAYHGEVPSAQRAAALAAFRAGSPPRLVATDVAARGLDLPEVGHVIMFDFPLNPVDYLHRSGRTARMGARGRVTSLLAKRDRVLAAAIEAAVLAGRPLDALTARRTDYLPGGKLAAKSGSRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGDDSTGVESSLMLVAF 506          
BLAST of jgi.p|Trimin1|348706 vs. uniprot
Match: D7FZQ1_ECTSI (DEAD box helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZQ1_ECTSI)

HSP 1 Score: 456 bits (1174), Expect = 7.450e-154
Identity = 244/435 (56.09%), Postives = 318/435 (73.10%), Query Frame = 0
Query:    3 ISDQPFASPASAPEATGEWSSLGLLPEVQGAVDNMGFATPSSIQRIAIPQITSGGNMVVAAATGSGKTLAYLLPVINALKSQEQLSDA---TVRKPGRPRALVLVPTRELAAQVLGVTKQVAHTAKVSSCGIFGGEDYGKQKRELAACQDVVVGSPGRLLKHRDQGTLFLSQVTHVVIDEVDTMLTQGFGPDITALVKPLMRRQGE-DAVQFVLVSATVTAALRRLL-EAGEFPKVRMVETRDVHRALPNMKHAMVDCKGRDKLSVLLEVLAQHGGSGSSAAAQAAARTLIFCNTVASARAVDHALRDAGVAAAAYHGEVPSAQRAAALAAFRAGSPPRLVATDVAARGLDLPEVGHVIMFDFPLNPVDYLHRSGRTARMGARGRVTSLLAKRDRVLAAAIEAAVLAGRPLDALTARRTDYLPGGKLAAKSGSRG 432
            +SD+PF  P +      +++ LGLL ++  A++  GF +PS IQR AIPQI +GGN+V AA+TGSGKTLAYL+P+I  LK +E  ++    ++R+  RPRA+VLVPTRELA QVL V K+++ + K SSCG+ GGEDYGKQ++ LA   D+VVG+PGRLLKH + G  F+S+  +VV+DEVDTMLTQGF  DI  L +PL+      D  QF+ V+AT+T A+R+LL E G++ KVR VETRDVH  LP+++H M+D KGRDK+S L+++  QH         +   RTL+FCNTV S RA +  LR+  V A +YHGEVPS +R++ L  F+AG    LV TD+A+RGLD+P+V HV+MFDFPLNP+DYLHRSGRTARMGA+GRVTSLLAKRD VLAAAIE AV +G PLD L++RRTDY  GGKL    G +G
Sbjct:    2 VSDRPFRGPEADVIEEMDFTGLGLLDDLVDAMEEFGFDSPSKIQRKAIPQILNGGNIVFAASTGSGKTLAYLMPLIQQLKVEEAQAEEGGESIRQTKRPRAIVLVPTRELAMQVLEVAKRLSRSCKFSSCGVVGGEDYGKQRQRLAGTVDIVVGTPGRLLKHHEAGNFFMSKANYVVVDEVDTMLTQGFAADIEKLNRPLLANPNRRDMAQFIFVTATLTKAVRKLLGEDGDYSKVRQVETRDVHHTLPSLRHVMIDIKGRDKMSALIDIAQQH--------LKDFKRTLVFCNTVKSCRAAEFGLREVDVKALSYHGEVPSDERSSNLERFKAGQAKYLVCTDIASRGLDMPDVDHVVMFDFPLNPIDYLHRSGRTARMGAKGRVTSLLAKRDLVLAAAIEQAVQSGLPLDELSSRRTDYATGGKLGPLFGRKG 428          
BLAST of jgi.p|Trimin1|348706 vs. uniprot
Match: A0A6H5KY63_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY63_9PHAE)

HSP 1 Score: 457 bits (1177), Expect = 2.280e-152
Identity = 242/435 (55.63%), Postives = 317/435 (72.87%), Query Frame = 0
Query:    3 ISDQPFASPASAPEATGEWSSLGLLPEVQGAVDNMGFATPSSIQRIAIPQITSGGNMVVAAATGSGKTLAYLLPVINALKSQEQLSDA---TVRKPGRPRALVLVPTRELAAQVLGVTKQVAHTAKVSSCGIFGGEDYGKQKRELAACQDVVVGSPGRLLKHRDQGTLFLSQVTHVVIDEVDTMLTQGFGPDITALVKPLMRRQGE-DAVQFVLVSATVTAALRRLL-EAGEFPKVRMVETRDVHRALPNMKHAMVDCKGRDKLSVLLEVLAQHGGSGSSAAAQAAARTLIFCNTVASARAVDHALRDAGVAAAAYHGEVPSAQRAAALAAFRAGSPPRLVATDVAARGLDLPEVGHVIMFDFPLNPVDYLHRSGRTARMGARGRVTSLLAKRDRVLAAAIEAAVLAGRPLDALTARRTDYLPGGKLAAKSGSRG 432
            +SD+PF  P +      +++ LGLL ++  A++  GF +PS IQR AIPQI +GGN+V AA+TGSGKTLAYL+P+I  LK +E  ++    ++R+  RPRA+VLVPTRELA QVL V K+++ + K SSCG+ GGEDYGKQ++ LA   D+VVG+PGRLLKH + G  F+S+  +V++DEVDTMLTQGF  DI  L +PL+      D  QF+ V+AT+T A+R+LL E G++PKVR VET DVH  LP+++H M+D KGRDK+S L+++  QH             RTL+FCNTV S RA +  LR+  + A +YHGEVPS +R++ L  F+AG    LV TD+A+RGLD+P+V HV+MFDFPLNP+DYLHRSGRTARMGA+GRVTSLLAKRD VLAAAIE AV +G PLD L++RRTDY  GGKL    G +G
Sbjct:  119 VSDRPFRGPEAEAIEEVDFTGLGLLDDLVDAMEEFGFNSPSKIQRKAIPQILNGGNVVFAASTGSGKTLAYLMPLIQQLKVEEAQAEEGGESIRQTKRPRAIVLVPTRELAVQVLEVAKRLSRSCKFSSCGVVGGEDYGKQRQRLAGTVDIVVGTPGRLLKHHEAGNFFMSKANYVIVDEVDTMLTQGFAADIEKLSRPLLANPNRRDTAQFIFVTATLTKAVRKLLGEDGDYPKVRQVETSDVHHTLPSLRHVMIDIKGRDKMSALIDIAQQHYKDFK--------RTLVFCNTVKSCRAAEFGLREVDLKALSYHGEVPSDERSSNLERFKAGQAKYLVCTDIASRGLDMPDVDHVVMFDFPLNPIDYLHRSGRTARMGAKGRVTSLLAKRDLVLAAAIEQAVQSGLPLDELSSRRTDYATGGKLGPLFGRKG 545          
BLAST of jgi.p|Trimin1|348706 vs. uniprot
Match: A0A7S2WDP9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WDP9_9STRA)

HSP 1 Score: 423 bits (1088), Expect = 4.420e-140
Identity = 235/415 (56.63%), Postives = 295/415 (71.08%), Query Frame = 0
Query:   20 EWSSLGLL-PEVQGAVDNMGFATPSSIQRIAIPQITSGGNMVVAAATGSGKTLAYLLPVINALKSQEQLSDATVRKPGRPRALVLVPTRELAAQVLGVTKQVAHTAKVSSCGIFGGEDYGKQKRELAACQDVVVGSPGRLLKHRDQGTLFLSQVTHVVIDEVDTMLTQGFGPDITALVKPLM-RRQGEDAVQFVLVSATVTAALRRLLEAGEFPKVRMVETRDVHRALPNMKHAMVDCKGRDKLSVLLEVLAQHGGSGSSAAAQAAARTLIFCNTVASARAVDHALRDAGVAAAAYHGEVPSAQRAAALAAFRAGSPPRLVATDVAARGLDLPEVGHVIMFDFPLNPVDYLHRSGRTARMGARGRVTSLLAKRDRVLAAAIEAAVLAGRPLDALTARRTDYLPGGKLA-AKSGSR 431
            E+  LGL+ P V+G  D MGF  PS IQ+ A+PQ     N+  AA+TGSGKTLAYLLP + ALK QE+L +   R P RPRALVLVPTRELA QVL V K+++H AK SSC + GG D+G+Q+R LA   DVVV SPGRLLKHR    +FLSQVTHV+IDEVDTML QGFGPDI  L+ P++   Q +  VQF+L +AT+T A++RLL+ G  P +R++ET D+H+A+P   H MV+ +GRDK+ +LLEV+                +TL+FCNTV S RAV+HALRDAG ++  YHGE+ SA R  +L AF+A   P LV TD+A+RGLD+P V  V+MFDFP NP+DYLHRSGRTAR G RG + SL+AKRD  L+ AIE A+  G PLD LT  R DY PGG+LA A +G+R
Sbjct:   80 EFRRLGLVEPLVKGLAD-MGFTAPSPIQQAAVPQALQKQNLAFAASTGSGKTLAYLLPTVQALKVQEEL-EGFERAPKRPRALVLVPTRELAVQVLSVAKRLSHNAKFSSCAVVGGGDHGQQRRALAGVVDVVVASPGRLLKHRLNDHVFLSQVTHVIIDEVDTMLVQGFGPDIKELLGPILFSPQRKSEVQFILATATMTQAVKRLLDEGGLPPMRILETSDLHQAVPTAMHRMVNAQGRDKIQLLLEVIRDTNLRNE--------QTLVFCNTVLSCRAVEHALRDAGCSSLGYHGEMNSAARLESLEAFKAADVPTLVCTDLASRGLDMPSVARVVMFDFPPNPIDYLHRSGRTARFGQRGEIVSLVAKRDLPLSTAIERAIAKGEPLDQLTNNRRDYQPGGRLAPATTGNR 484          
BLAST of jgi.p|Trimin1|348706 vs. uniprot
Match: A0A4D9D2M2_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D2M2_9STRA)

HSP 1 Score: 423 bits (1087), Expect = 7.030e-139
Identity = 226/442 (51.13%), Postives = 309/442 (69.91%), Query Frame = 0
Query:    3 ISDQPFASPASAPEATG------------EWSSLGLLPEVQGAVDNMGFATPSSIQRIAIPQITSGGNMVVAAATGSGKTLAYLLPVINALKSQEQLSDATVRKPGRPRALVLVPTRELAAQVLGVTKQVAHTAKVSSCGIFGGEDYGKQKRELAACQDVVVGSPGRLLKHRDQGTLFLSQVTHVVIDEVDTMLTQGFGPDITALVKPLMRRQGEDAVQFVLVSATVTAALRRLL-EAGEFPKVRMVETRDVHRALPNMKHAMVDCKGRDKLSVLLEVLAQHGGSGSSAAAQAAARTLIFCNTVASARAVDHALRDAGVAAAAYHGEVPSAQRAAALAAFRAGSPPRLVATDVAARGLDLPEVGHVIMFDFPLNPVDYLHRSGRTARMGARGRVTSLLAKRDRVLAAAIEAAVLAGRPLDALTARRTDYLPGGKLAAKSGSR 431
            IS QPF++PA+ P+ T             E+  LGL  E    +  +G   PS IQR+AIP    G ++  +A+TGSGKTLAYLLP++  LK QE + +   R+  RPRAL+LVPTREL  QVL V K ++H  K+SSCG+ GGED+G Q+R L    D+VV SPGRLL+H ++G +F SQVTHVV+DE+DTML  GFGPD+  L+ PL  +   + VQ+++ +AT+T A++RL+ E G FPK R +++ D H++LP M+H M+D KG DK+ +LL+V++Q   +G         R +IFCNTV S RA +HALR+  + +A YHG++ S +RAAAL  F++G    LV TD+A+RGLD+P V HV+MFDFPLNP++YLHRSGRTARMGA+G+VTSLL KRD+VLA+A++ AV  G PLD+L+AR+ DY  GGKL+  S  +
Sbjct:  101 ISSQPFSTPATPPKTTSRSGDENAACDLAEFRRLGLGEETLEGLRKLGIKEPSVIQRLAIPAALKGDDVAFSASTGSGKTLAYLLPIMQELKWQEAV-EGKERQTCRPRALILVPTRELVTQVLEVIKSLSHVIKLSSCGLHGGEDFGVQRRRLGGMVDLVVASPGRLLQHYEKGHVFFSQVTHVVVDEMDTMLKDGFGPDLKRLMVPLEAKSKREKVQYLMATATLTPAVKRLMAEEGNFPKTRFLQSEDAHKSLPTMRHIMLDTKGGDKVQLLLDVVSQGRQNGE--------RAMIFCNTVQSCRAAEHALRELALPSACYHGDMRSEERAAALQKFKSGEVSFLVCTDIASRGLDMPFVEHVVMFDFPLNPIEYLHRSGRTARMGAKGKVTSLLTKRDKVLASAVQTAVAKGLPLDSLSARKRDYESGGKLSGLSSGK 533          
BLAST of jgi.p|Trimin1|348706 vs. uniprot
Match: A0A7S2FKV5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FKV5_9STRA)

HSP 1 Score: 382 bits (982), Expect = 2.880e-124
Identity = 222/439 (50.57%), Postives = 283/439 (64.46%), Query Frame = 0
Query:   20 EWSSLGLLPEVQGAVDNMGFATPSSIQRIAIPQITSGGNMVVAAATGSGKTLAYLLPVINALKSQEQLSDATVRKPGRPRALVLVPTRELAAQVLGVTKQVAHTAKVSSCGIFGGEDYGKQKRELAACQDVVVGSPGRLLKHRDQGTLFLSQVTHVVIDEVDTMLTQGFGPDITALVKP-LMRRQGEDAVQFVLVSATVTAALRRLLEAGEFPKVRMVETRDVHRALPNMKHAMVDCKGRDKLSVLLEVL-AQHGGSGSSAAAQAAARTLIFCNTVASARAVDHALRD-------------------------AGVAAAAYHGEVPSAQRAAALAAFRAGSPPRLVATDVAARGLDLPEVGHVIMFDFPLNPVDYLHRSGRTARMGARGRVTSLLAKRDRVLAAAIEAAVLAGRPLDALTARRTDYLPGGKLAAKSGSR 431
            E+  LGL   +  AV ++    PSSIQR A+PQ+  G N+ +AA+TGSGKTLAYLLP++ ALK QE +    + K  RPR LVLVPTRELA QVL V K + H +K SSC I GG D G+Q+R L   QDV V S GRLLKH++ G + LSQVTHVVIDEVDTML QGFGPD+  L+KP L+  +  + VQF++V+AT+T A+RRLLE G+ P++R +E  D+H+ALPN  H M++  G+DK+ VL +++  +H              TLIFCNTVAS RAV HALR+                         A     +YHGE+PS +R  AL  F+AG    LV TD+A RGLD+ +V  VI FDFP NP+DYLHR+GRTAR G +G + SL+ KRD  LA AIE AV  G PLD LT  + DY PGG+L+ K   +
Sbjct:   40 EFRKLGLTEGLLEAVADLELKEPSSIQRAAVPQVLQGQNIALAASTGSGKTLAYLLPIVQALKIQEDMGYDRLAK--RPRVLVLVPTRELATQVLSVAKHLGHYSKFSSCCIVGGGDNGQQRRALTGVQDVCVASAGRLLKHQELGHMHLSQVTHVVIDEVDTMLMQGFGPDLQKLLKPILLSPERRENVQFIVVTATMTKAVRRLLEDGDLPQMRTLEADDLHQALPNALHRMLNAAGQDKIEVLKDLVRGKHQKP-----------TLIFCNTVASCRAVTHALREETNNNFGDMDYDSDDAEGXXXXXXXASSPVRSYHGEMPSNERVEALGDFKAGDASILVCTDLAQRGLDIQDVAKVINFDFPRNPIDYLHRAGRTARAGRKGEILSLVLKRDLPLATAIERAVARGEPLDGLTNDKRDYAPGGRLSDKEAQK 465          
BLAST of jgi.p|Trimin1|348706 vs. uniprot
Match: A0A0G4F3L1_VITBC (Uncharacterized protein n=4 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4F3L1_VITBC)

HSP 1 Score: 399 bits (1025), Expect = 1.090e-122
Identity = 218/422 (51.66%), Postives = 291/422 (68.96%), Query Frame = 0
Query:   20 EWSSLGLLPEV-QGAVDNMGFATPSSIQRIAIPQITSGGNMVVAAATGSGKTLAYLLPVINALKSQEQLSDATVRKPGRPRALVLVPTRELAAQVLGVTKQVAHTAKVSSCGIFGGEDYGKQKRELAACQDVVVGSPGRLLKHRDQGTLFLSQVTHVVIDEVDTMLTQGFGPDITALVKPLMRRQGEDAVQFVLVSATVTAALRRLLEAGEFPKVRMVETRDVHRALPNMKHAMVDCKGRDKLSVLLEVLA-------QHGGSGSSAAAQAAAR-TLIFCNTVASARAVDHALRDAGVAAAAYHGEVPSAQRAAALAAFRAGSPPRLVATDVAARGLDLPEVGHVIMFDFPLNPVDYLHRSGRTARMGARGRVTSLLAKRDRVLAAAIEAAVLAGRPLDALTARRTDYLPGGKLAAKSGSRG 432
            +W  LGL   + +G    +G   P++IQR+AIPQ+ SGGN+V AA TGSGKTLAYLLP++  LKS+E L   ++R+P RPRAL+L PTREL+ QVL V +  +  AK+SSC + GG+ + KQKR+L+   DVVVG+PGR+L H D+  L LS+V++VVIDEVDTML QGFGPDI  L++PL+ R   +  Q V  +AT+T A+RRLL+  + P VR VE   +H++LPN+++ M+D KG DKL  L E+L          GG G   A +   + TL+FCNTV S RA  HA+++AG  + AYHGEVP  QR A L AFR G  P LV TD+AARGLD+ +V  V+MFDFPLNP+D++HR+GRT R G++G V  LL +RDRVLA  ++ A+  GRPL  L++ R DY  GG+L   S + G
Sbjct:  845 KWRRLGLEESIARGTASMLGDVEPTAIQRLAIPQVLSGGNIVFAAETGSGKTLAYLLPMMQHLKSEE-LDGRSLRRPKRPRALILSPTRELSQQVLEVLRGSSQLAKLSSCSVIGGDSFAKQKRDLSKILDVVVGTPGRVLFHWDKSNLALSEVSYVVIDEVDTMLMQGFGPDINKLLQPLITRPDTEQPQLVFATATLTKAVRRLLDQEDLPAVRYVEAPGLHKSLPNVRYEMIDTKGEDKLDALRELLKVRGPQRPAEGGDGQRGAGEVYRKSTLVFCNTVNSCRACQHAIQEAGFTSLAYHGEVPQEQRKANLEAFRHGQVPYLVCTDLAARGLDIAQVDQVVMFDFPLNPIDFIHRAGRTGRAGSKGSVLCLLQRRDRVLATGVQRAIRLGRPLSDLSSSRKDYEKGGRLEQLSQAGG 1265          
BLAST of jgi.p|Trimin1|348706 vs. uniprot
Match: A0A7S3XYE8_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XYE8_HETAK)

HSP 1 Score: 355 bits (910), Expect = 2.280e-115
Identity = 201/339 (59.29%), Postives = 245/339 (72.27%), Query Frame = 0
Query:   97 RPRALVLVPTRELAAQVLGVTKQVAHT-AKVSSCGIFGGEDYGKQKRELAACQDVVVGSPGRLLKHRDQGTLFLSQVTHVVIDEVDTMLTQGFGPDITALVKPLMRRQGEDAVQFVLVSATVTAALRRLLEAGEF--PKVRMVETRDVHRALPNMKHAMVDCKGRDKLSVLLEVLAQHGGSGSSAAAQAAARTLIFCNTVASARAVDHALRDAGVAAAAYHGEVPSAQRAAALAAFRAGSPPRLVATDVAARGLDLPEVGHVIMFDFPLNPVDYLHRSGRTARMGARGRVTSLLAKRDRVLAAAIEAAVLAGRPLDALTARRTDYLPGGKLAAKSGSRG 432
            RPRALVLVPTRELA QVL V K + H  A+V+S  + GG DYG+Q+R L   QDV+V +PGRLL+HR++G  + S+VTHVVIDE+DTML QGFGP+I  L++ L R    D  QF+L +AT+T A+RR LE   +     R+VE  DVHR+LPN++HAMVD KGRDK++VLL+VL QH              T++FCNTV SA+ +DH+L +AG+ A  YHGEV   +R   LA F+ G    LVATD+AARGLD+P+V HV+MFDFPLNPVDYLHRSGRTARMGA G VTS+LAKRDRVLA AIEAAV  G PLD LTA + DY  G KLA   G RG
Sbjct:   10 RPRALVLVPTRELALQVLEVVKGLGHGGARVASAAVTGGGDYGQQRRVLERVQDVIVATPGRLLQHREKGHFYGSRVTHVVIDEMDTMLMQGFGPEIKKLIQTLDR----DRCQFLLCTATLTKAVRRFLEEENYIPGPPRVVEASDVHRSLPNLRHAMVDTKGRDKVTVLLDVLFQHREK----------TTIVFCNTVKSAQMLDHSLAEAGLRALCYHGEVRGDERRENLARFKRGEVRFLVATDIAARGLDVPDVEHVVMFDFPLNPVDYLHRSGRTARMGASGMVTSVLAKRDRVLAGAIEAAVRKGLPLDTLTASKRDYQEGKKLAEVVGRRG 334          
BLAST of jgi.p|Trimin1|348706 vs. uniprot
Match: A0A7S4LLS1_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4LLS1_9EUGL)

HSP 1 Score: 350 bits (899), Expect = 6.610e-112
Identity = 194/408 (47.55%), Postives = 269/408 (65.93%), Query Frame = 0
Query:   24 LGLLPEVQGAVDNMGFATPSSIQRIAIPQITSGGNMVVAAATGSGKTLAYLLPVINALKSQEQLSDATVRKPGRPRALVLVPTRELAAQVLGVTKQVAHTAKVSSCGIFGGEDYGKQKRELAACQDVVVGSPGRLLKHRDQGTLFLSQVTHVVIDEVDTMLTQGFGPDITALVKPLMRRQGEDAVQFVLVSATVTAALRRLLEAGEFPKVRMVETRDVHRALPNMKHAMVDCKGRDKLSVLLEVLAQHGGSGSSAAAQAAARTLIFCNTVASARAVDHALRDAGVAAAAYHGEVPSAQRAAALAAFRAGSPPRLVATDVAARGLDLPEVGHVIMFDFPLNPVDYLHRSGRTARMGARGRVTSLLAKRDRVLAAAIEAAVLAGRPLDALTARRTDYLPGGKLAAKSGSR 431
            +G++ E+Q  +  MG  TPS IQ++ IP++  G ++  AA TGSGKTLAYLLPVI  LK+QE       R P RPRA+V VPTREL  QVL V K ++H AK+SS  + GGEDYGKQ+R L    DVVV +PGRL +H  +G  ++S+V  VVIDEVDTMLTQGF  D+   + P++     D +Q +  +AT+T  +R+ L+  +F  V ++E  D+HR +P+M+H +V  KGRDK+ VL EVL  +         Q   +T+IFCN++A+  AVD+ L++ GV   +YH ++P   RAA L  F++G+   LV TD+  RGLD+ +V HVI+FDFP +P+D+LHR+GRTARMG  G VTS++ K++  LA AI+ A+    PLD LT    DY  GG+LAA  G +
Sbjct:   68 MGVITELQEGLRGMGITTPSPIQQMVIPRLMRGESLAYAATTGSGKTLAYLLPVIQELKAQELAG--VERLPKRPRAIVFVPTRELGQQVLSVLKALSHHAKISSTLVVGGEDYGKQRRALDRPVDVVVATPGRLREHWKKGHFYMSEVKEVVIDEVDTMLTQGFTGDVMQFLNPIILNDDRD-LQVIFATATMTRPVRKFLQESKFADVEILEAADLHRVVPSMRHVIVQTKGRDKMDVLEEVLNAN---------QMMKKTMIFCNSLAAVHAVDNTLQEFGVDVVSYHKDLPVGDRAANLEKFKSGAVSTLVCTDIGQRGLDI-DVDHVILFDFPRSPIDFLHRAGRTARMGKTGTVTSIIHKKEYTLARAIDFAIKKDLPLDGLTTNPNDYKDGGRLAAIVGRK 462          
BLAST of jgi.p|Trimin1|348706 vs. uniprot
Match: A0A7S4R250_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4R250_9STRA)

HSP 1 Score: 344 bits (883), Expect = 1.790e-107
Identity = 220/513 (42.88%), Postives = 301/513 (58.67%), Query Frame = 0
Query:   21 WSSLGLLPEVQGAVDN-MGFAT-PSSIQRIAIPQITS-GGNMVVAAATGSGKTLAYLLPVINALKSQEQLSDATV--------------------RKPGRPRALVLVPTRELAAQVLGVTKQVAHTAKVSSCGIFGGEDYGKQKRELAACQ-DVVVGSPGRLLKHRDQGTLFLSQVTHVVIDEVDTMLTQGFGPDITALVKPLMRRQG-----------EDAVQFVLVSATVTAALRRLLEAGEFP---------------------------------KVRMVETRDVHRALPNMKHAMVDCKGRDKLSVLLEVLAQHGGSGSSAAAQAAAR-----------TLIFCNTVASARAVDHALRDAGVAAAAYHGEVPSAQRAAALAAFR-AGS-------PPRLVATDVAARGLDLPEVGHVIMFDFPLNPVDYLHRSGRTARMGA------------------RGRVTSLLAKRDRVLAAAIEAAVLAGRPLDALTARRTDYLPGGKLAAKS 428
            WS LGL  ++   + N +GF   P+ +Q++A+P + S   ++  AA+TGSGKTLAYLLP+I  LKS+E L  +T+                    R+P RPRA+VL PTRELA Q+L V K ++H AK+S+  + GGED GKQ++ L +   D++V +PGRL+KHRD   +FL  V HVVIDE+DTML QGF  DI +L+ P++ +Q            E A + +L SAT+T A++RLL   + P                                  +R++    +HRA+P ++   VD    DKLS+L++V+A+ GG GS+ + +   +           TL+FCNTV+S RA +HAL ++GV +  YHG + S  RAA L  FR  GS       P  LV TD+AARGLD+PEV HV+MFDFPLNP+DYLHR+GRTAR GA                   GRVT+L+AKRDRVLA AIE AV  G P+D L++R++DYLPGG+L A S
Sbjct:  141 WSKLGLTSDITTVLTNKLGFLDGPTPVQKMAVPALLSESASVAFAASTGSGKTLAYLLPIIQCLKSEELLLTSTITTPGEDAAAANEAAAALSKLRRPKRPRAIVLAPTRELAQQILSVLKVLSHQAKISAELLVGGEDNGKQRKRLESRPVDILVATPGRLVKHRDNSNVFLGSVKHVVIDEMDTMLEQGFQSDIGSLLHPMLYKQKVVREGDELELVEGAPRLILTSATMTNAVKRLLNHPDLPFKARRDPPRKKDDGDENSKDESILKIALPTKQTNMRILTAPGLHRAVPRLRQTFVDVGQADKLSLLVDVVARSGGEGSALSTKDKQQSIDNESHRRPLTLVFCNTVSSCRAAEHALAESGVNSLCYHGGLNSVDRAANLKTFREVGSSNDDEEAPTVLVCTDIAARGLDVPEVDHVVMFDFPLNPIDYLHRAGRTARGGADRDRSGKSEGQRRGVRPGNGRVTALVAKRDRVLAMAIENAVRNGEPIDGLSSRKSDYLPGGRLGAGS 653          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348706 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CEI1_9STRA1.080e-297100.00DEAD box helicase n=1 Tax=Tribonema minus TaxID=30... [more]
D7FZQ1_ECTSI7.450e-15456.09DEAD box helicase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A6H5KY63_9PHAE2.280e-15255.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2WDP9_9STRA4.420e-14056.63Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A4D9D2M2_9STRA7.030e-13951.13Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S2FKV5_9STRA2.880e-12450.57Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A0G4F3L1_VITBC1.090e-12251.66Uncharacterized protein n=4 Tax=Vitrella brassicaf... [more]
A0A7S3XYE8_HETAK2.280e-11559.29Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S4LLS1_9EUGL6.610e-11247.55Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A7S4R250_9STRA1.790e-10742.88Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001650Helicase, C-terminalSMARTSM00490helicmild6coord: 297..378
e-value: 2.1E-27
score: 107.1
IPR001650Helicase, C-terminalPFAMPF00271Helicase_Ccoord: 280..378
e-value: 2.6E-25
score: 88.9
IPR001650Helicase, C-terminalPROSITEPS51194HELICASE_CTERcoord: 260..419
score: 18.650249
IPR014001Helicase superfamily 1/2, ATP-binding domainSMARTSM00487ultradead3coord: 38..251
e-value: 1.5E-49
score: 180.6
IPR014001Helicase superfamily 1/2, ATP-binding domainPROSITEPS51192HELICASE_ATP_BIND_1coord: 50..235
score: 27.183268
IPR011545DEAD/DEAH box helicase domainPFAMPF00270DEADcoord: 44..221
e-value: 2.1E-43
score: 148.1
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3D3.40.50.300coord: 4..234
e-value: 2.9E-64
score: 218.7
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3D3.40.50.300coord: 235..404
e-value: 3.7E-44
score: 152.1
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 97..394
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 422..506
NoneNo IPR availablePANTHERPTHR47960:SF19DEAD-BOX ATP-DEPENDENT RNA HELICASE 39coord: 14..414
NoneNo IPR availablePANTHERPTHR47960DEAD-BOX ATP-DEPENDENT RNA HELICASE 50coord: 14..414
NoneNo IPR availableCDDcd18787SF2_C_DEADcoord: 249..387
e-value: 1.90611E-37
score: 132.246
NoneNo IPR availableCDDcd00268DEADccoord: 30..226
e-value: 7.59513E-69
score: 217.31
IPR014014RNA helicase, DEAD-box type, Q motifPROSITEPS51195Q_MOTIFcoord: 19..47
score: 9.313673

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_30contigContig_30:274598..279220 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348706mRNA_5344Tribonema minus UTEX_B_3156 mRNAContig_30 274554..279220 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|348706|estExt_Genemark1.C_Ctg_300044 ID=Trimin1|348706|estExt_Genemark1.C_Ctg_300044|Name=jgi.p|Trimin1|348706|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=507bp
MSISDQPFASPASAPEATGEWSSLGLLPEVQGAVDNMGFATPSSIQRIAI
PQITSGGNMVVAAATGSGKTLAYLLPVINALKSQEQLSDATVRKPGRPRA
LVLVPTRELAAQVLGVTKQVAHTAKVSSCGIFGGEDYGKQKRELAACQDV
VVGSPGRLLKHRDQGTLFLSQVTHVVIDEVDTMLTQGFGPDITALVKPLM
RRQGEDAVQFVLVSATVTAALRRLLEAGEFPKVRMVETRDVHRALPNMKH
AMVDCKGRDKLSVLLEVLAQHGGSGSSAAAQAAARTLIFCNTVASARAVD
HALRDAGVAAAAYHGEVPSAQRAAALAAFRAGSPPRLVATDVAARGLDLP
EVGHVIMFDFPLNPVDYLHRSGRTARMGARGRVTSLLAKRDRVLAAAIEA
AVLAGRPLDALTARRTDYLPGGKLAAKSGSRGGGGGGSGSSARRTGSSDA
SARRPRSAAGGGGRGAAAGGGGGPRGKGVPRRRRRGGGGPGDDSTGVESS
LMLVAF*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001650Helicase_C
IPR014001Helicase_ATP-bd
IPR011545DEAD/DEAH_box_helicase_dom
IPR027417P-loop_NTPase
IPR014014RNA_helicase_DEAD_Q_motif