Trimin1|348615|estExt_Genemark1.C_Ctg_280042 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|348615
Unique NameTrimin1|348615|estExt_Genemark1.C_Ctg_280042
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length968
Homology
BLAST of jgi.p|Trimin1|348615 vs. uniprot
Match: A0A836CH32_9STRA (Plus-3 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH32_9STRA)

HSP 1 Score: 1316 bits (3406), Expect = 0.000e+0
Identity = 967/967 (100.00%), Postives = 967/967 (100.00%), Query Frame = 0
Query:    1 MSSLRLALKRSLDVNHDDSEASSDPNARPAPPPVAVKRXXXXXXXXXXXXXXXXXVHSDSEELGEDEDTGAHSESGTSSGSDDGRKGGXXXXXRSGSNRRLSVNASATKGGARQQRRGSGARSRSPSASPAASSEDTDAYDEDLYENEEDKAKLMAMPEVERENILYERAERRRERXERRATLQRVKARIGTKGAATAAVFSTQVVSXXXXXXXXXXXXXAAPRALSLKQXXXXXXXXXXXXXXXKTAAAEAARKLAAAXTAYTDTSSESEQEEVPKPGTRSAPVPAKAERGASSDDSSDGDKPQRSSRDQRAASPNRDARRRRSDSESGASAHSSDXXXXXXXXXXXXXXQRSSRQRASSXXXXXSRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRADSPEERHSGRTQAESGPPAPAVAMAWESAVTLNDINMCRVPRENLEKWLNEPFFDEALKGCFVKLGVGMRNNQAVYRMLRXXXXXXXXXXXXCEVEGVTKYKRQYTMPGGMPTTKALTLRFGSAKRDFRMDTISNHRITEGEFRAWRQACAKDRVKVPTPQECQARYARAKNAVTRHQYTVEHVAEMVKRNAEQGRVLSSAALAKLKLERAIGAAVMRLEKEEADLAAAXXXXXXXXXXXXXXXXXXXXMASRGGALRELEEAQEKHLAASAEVDQLRDDLAKLEEEEARKKARMEDAQGRAIXXXXXXXXXXXXXXMRSLNARNRGANIAIDAATARRRQSQENGQAKTSDPFARRACRPKILWAVGTSPTRGRSPVPPEEQQAEQLPQEQEEDEDGAFDGAEETKSREALSDLQRDAAAEIATAGMGELAIQAPDNANGGMDTNGADKNGGMTPRTQQLHKKHSFGXXXXXXXXXXXXXXXXXXXXXAQLGXXXXXXXXXXXXEAERAAAAAQQAPVEPRAATNRRAGMSLSDYLKQARKLQEQMG 967
            MSSLRLALKRSLDVNHDDSEASSDPNARPAPPPVAVKRXXXXXXXXXXXXXXXXXVHSDSEELGEDEDTGAHSESGTSSGSDDGRKGGXXXXXRSGSNRRLSVNASATKGGARQQRRGSGARSRSPSASPAASSEDTDAYDEDLYENEEDKAKLMAMPEVERENILYERAERRRERXERRATLQRVKARIGTKGAATAAVFSTQVVSXXXXXXXXXXXXXAAPRALSLKQXXXXXXXXXXXXXXXKTAAAEAARKLAAAXTAYTDTSSESEQEEVPKPGTRSAPVPAKAERGASSDDSSDGDKPQRSSRDQRAASPNRDARRRRSDSESGASAHSSDXXXXXXXXXXXXXXQRSSRQRASSXXXXXSRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRADSPEERHSGRTQAESGPPAPAVAMAWESAVTLNDINMCRVPRENLEKWLNEPFFDEALKGCFVKLGVGMRNNQAVYRMLRXXXXXXXXXXXXCEVEGVTKYKRQYTMPGGMPTTKALTLRFGSAKRDFRMDTISNHRITEGEFRAWRQACAKDRVKVPTPQECQARYARAKNAVTRHQYTVEHVAEMVKRNAEQGRVLSSAALAKLKLERAIGAAVMRLEKEEADLAAAXXXXXXXXXXXXXXXXXXXXMASRGGALRELEEAQEKHLAASAEVDQLRDDLAKLEEEEARKKARMEDAQGRAIXXXXXXXXXXXXXXMRSLNARNRGANIAIDAATARRRQSQENGQAKTSDPFARRACRPKILWAVGTSPTRGRSPVPPEEQQAEQLPQEQEEDEDGAFDGAEETKSREALSDLQRDAAAEIATAGMGELAIQAPDNANGGMDTNGADKNGGMTPRTQQLHKKHSFGXXXXXXXXXXXXXXXXXXXXXAQLGXXXXXXXXXXXXEAERAAAAAQQAPVEPRAATNRRAGMSLSDYLKQARKLQEQMG
Sbjct:    1 MSSLRLALKRSLDVNHDDSEASSDPNARPAPPPVAVKRXXXXXXXXXXXXXXXXXVHSDSEELGEDEDTGAHSESGTSSGSDDGRKGGXXXXXRSGSNRRLSVNASATKGGARQQRRGSGARSRSPSASPAASSEDTDAYDEDLYENEEDKAKLMAMPEVERENILYERAERRRERXERRATLQRVKARIGTKGAATAAVFSTQVVSXXXXXXXXXXXXXAAPRALSLKQXXXXXXXXXXXXXXXKTAAAEAARKLAAAXTAYTDTSSESEQEEVPKPGTRSAPVPAKAERGASSDDSSDGDKPQRSSRDQRAASPNRDARRRRSDSESGASAHSSDXXXXXXXXXXXXXXQRSSRQRASSXXXXXSRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRADSPEERHSGRTQAESGPPAPAVAMAWESAVTLNDINMCRVPRENLEKWLNEPFFDEALKGCFVKLGVGMRNNQAVYRMLRXXXXXXXXXXXXCEVEGVTKYKRQYTMPGGMPTTKALTLRFGSAKRDFRMDTISNHRITEGEFRAWRQACAKDRVKVPTPQECQARYARAKNAVTRHQYTVEHVAEMVKRNAEQGRVLSSAALAKLKLERAIGAAVMRLEKEEADLAAAXXXXXXXXXXXXXXXXXXXXMASRGGALRELEEAQEKHLAASAEVDQLRDDLAKLEEEEARKKARMEDAQGRAIXXXXXXXXXXXXXXMRSLNARNRGANIAIDAATARRRQSQENGQAKTSDPFARRACRPKILWAVGTSPTRGRSPVPPEEQQAEQLPQEQEEDEDGAFDGAEETKSREALSDLQRDAAAEIATAGMGELAIQAPDNANGGMDTNGADKNGGMTPRTQQLHKKHSFGXXXXXXXXXXXXXXXXXXXXXAQLGXXXXXXXXXXXXEAERAAAAAQQAPVEPRAATNRRAGMSLSDYLKQARKLQEQMG 967          
BLAST of jgi.p|Trimin1|348615 vs. uniprot
Match: A0A6H5JFI3_9PHAE (Plus3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFI3_9PHAE)

HSP 1 Score: 135 bits (339), Expect = 1.220e-28
Identity = 109/343 (31.78%), Postives = 155/343 (45.19%), Query Frame = 0
Query:  451 LNDINMCRVPRENLEKWLNEPFFDEALKGCFVKLGVGM-RNNQAVYRMLRXXXXXXXXXXXXCEVEGVTKYKRQYTMPGGMPTTKALTLRFGSAK-RDFRMDTISNHRITEGEFRAWRQACAKDRVKVPTPQECQARYARAKNAVTRHQYTVEHVAEMVKRNAEQGRVLSSAALAKLKLERAIGAAVMRLEKEEADLAAAXXXXXXXXXXXXXXXXXXXXMASRGGALRELEEAQEKHLAASAEVDQLRDDLAKLEEEEARKKARMEDAQGRAIXXXXXXXXXXXXXXMRSLNARNRGANIAIDA--------ATARRRQSQENGQAKTSDPFARRACRPKIL 783
            L DIN CRVPR+ LE+W NEP+F++A++GCFV++  G+ R+ + VY M               E+ GV  YKR+Y + G   T K L +   S++ RD  MD +SN RI+E E+  W+      +V   T  EC AR  R    V  H+Y+VE V+ MVK+   +G    + AL++ KL  ++ AAV    ++EAD                                                    R+ LAKL+E EA+KK  ++                     MR+LN RN+  NI  D         A A+ R +   G     DPF RR+CRP+IL
Sbjct:  540 LEDINRCRVPRDYLERWANEPYFEKAVQGCFVRVARGVGRSGERVYVM--------------AEIVGVGPYKRKYKI-GNSYTHKCLKISASSSQVRDQCMDIVSNSRISEAEYTRWKDGRKGAKVPTLTVSECNARRVRMNKIVKGHRYSVEEVSAMVKQRESEGVAFKNIALSRDKLTNSLEAAVAEGREDEADFC--------------------------------------------------REQLAKLDEREAQKKKSLDSGAA----------------GMRALNERNKTFNIRTDTHVGRKKRLAEAKARVASAAGDEGDFDPFKRRSCRPQIL 801          
BLAST of jgi.p|Trimin1|348615 vs. uniprot
Match: D8LLT9_ECTSI (Plus3 domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLT9_ECTSI)

HSP 1 Score: 126 bits (317), Expect = 8.720e-27
Identity = 76/196 (38.78%), Postives = 114/196 (58.16%), Query Frame = 0
Query:  451 LNDINMCRVPRENLEKWLNEPFFDEALKGCFVKLGVGM-RNNQAVYRMLRXXXXXXXXXXXXCEVEGVTKYKRQYTMPGGMPTTKALTLRFGSAK-RDFRMDTISNHRITEGEFRAWRQACAKDRVKVPTPQECQARYARAKNAVTRHQYTVEHVAEMVKRNAEQGRVLSSAALAKLKLERAIGAAVMRLEKEEAD 644
            L DIN CRVPR+ LE+W NEP+F++A++GCFV++  G+ R+ + VY M               E+ GV  YKR+Y + G   T K L +   S++ RD  MD +SN RI+EGE+  W+      +V   T  EC AR  R    V  H+Y+ E V+ MVK+   +G   ++ AL+++KL+ ++ AAV    ++EAD
Sbjct:  240 LEDINRCRVPRDYLERWANEPYFEKAVQGCFVRVARGVGRSGERVYVM--------------AEIVGVGPYKRKYKI-GNSYTQKCLKISASSSQVRDQCMDIVSNSRISEGEYTRWKDGRKGAKVPTLTVSECNARRVRMNKIVQGHRYSAEEVSAMVKQRQSEGVAFTNVALSRMKLDNSLEAAVAEGREDEAD 420          
BLAST of jgi.p|Trimin1|348615 vs. uniprot
Match: A0A7S2SHN1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SHN1_9STRA)

HSP 1 Score: 103 bits (257), Expect = 6.960e-19
Identity = 91/345 (26.38%), Postives = 149/345 (43.19%), Query Frame = 0
Query:  450 TLNDINMCRVPRENLEKWLNEPFFDEALKGCFVKLGVGMRNNQAVYRMLRXXXXXXXXXXXXCEVEGVTKYKRQYTMPG----GMPTTKALTLRFGSAKRDFRMDTISNHRITEGEFRAWRQACAKDRVKVPTPQECQARYARAKNAVTRHQYTVEHVAEMVKRNAEQGRVLS--SAALAKLKLERAIGAAVMRLEKEEADLAAAXXXXXXXXXXXXXXXXXXXXMASRGGALRELEEAQEKHLAASAEVDQLRDDL-AKLEEEEARKKARMEDAQGRAIXXXXXXXXXXXXXXMRSLNARNRGANIAIDAATARRRQSQENGQAKTSDPFARRACRPKILWAVG 787
            +L+DIN+ R+PR  LE+ + EP+ D+A+KG FV+  +G  +   VYRM              CE++GV +  + Y +       + T   L + +G  +R  ++D +SN R  + E   W++     R+++ TP EC+ R+ +       H YT E +A MV R  +  ++    + A AK++++  +  A  +L     DLA A                       R  A  + E  +E+              L A+LE+   + K R E  +G+                +  +N RN   NI ID+  +RR  ++    A   DPF R   R K LW  G
Sbjct:  328 SLHDINLVRIPRLFLERKIEEPYLDKAVKGSFVRYLIGTHHGTKVYRM--------------CEIKGVERLPKPYKLSAVNRKELTTHNYLRIAYGKDERQVKIDKVSNSRFKDAELEQWKRYFRDKRLRMITPTECKRRHQKLVEISKNHTYTAEEIATMVDRRRKNSKMSGRQNLASAKIRIQSEMDVARSKL----VDLATAEQANEAMLNEMDNLDP-----VQRHRAQADYENTRERIXXXXXXXXXXXQGLNAELEQLLNQAKKRTEKFKGKE-------------DALAKINERNARENIQIDSVDSRRVLAETMSAAAAHDPFRRTKTRTKDLWKTG 636          
BLAST of jgi.p|Trimin1|348615 vs. uniprot
Match: A0A7S4A0N2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A0N2_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 9.950e-19
Identity = 58/143 (40.56%), Postives = 76/143 (53.15%), Query Frame = 0
Query:  454 INMCRVPRENLEKWLNEPFFDEALKGCFVKLGVGMR---NNQAVYRMLRXXXXXXXXXXXXCEVEGVTKYKRQYTMPGGMPTTKALTLRFGSAKRDFRMDTISNHRITEGEFRAWRQACAKDRVKVPTPQECQARYARAKNAV 593
            IN  R+PR+ LEKW+ EPFFD A+ GCFV+LGVG       +  Y++              CE+ GV +YK  Y + G   T KAL LR G   R +RM+ ISNHR T  E   W+      R K+P+ +E   R AR +  V
Sbjct:  146 INKLRLPRKLLEKWVEEPFFDTAVVGCFVRLGVGKAPGLRGEPQYKV--------------CEIIGVGEYKHSYAL-GEFQTKKALLLRIGRNTRLWRMNVISNHRFTPDELNEWQSTMFAARQKIPSAEEISKRKARMRETV 273          
BLAST of jgi.p|Trimin1|348615 vs. uniprot
Match: A0A7S4A086_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A086_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 4.490e-18
Identity = 58/143 (40.56%), Postives = 76/143 (53.15%), Query Frame = 0
Query:  454 INMCRVPRENLEKWLNEPFFDEALKGCFVKLGVGMR---NNQAVYRMLRXXXXXXXXXXXXCEVEGVTKYKRQYTMPGGMPTTKALTLRFGSAKRDFRMDTISNHRITEGEFRAWRQACAKDRVKVPTPQECQARYARAKNAV 593
            IN  R+PR+ LEKW+ EPFFD A+ GCFV+LGVG       +  Y++              CE+ GV +YK  Y + G   T KAL LR G   R +RM+ ISNHR T  E   W+      R K+P+ +E   R AR +  V
Sbjct:  146 INKLRLPRKLLEKWVEEPFFDTAVVGCFVRLGVGKAPGLRGEPQYKV--------------CEIIGVGEYKHSYAL-GEFQTKKALLLRIGRNTRLWRMNVISNHRFTPDELNEWQSTMFAARQKIPSAEEISKRKARMRETV 273          
BLAST of jgi.p|Trimin1|348615 vs. uniprot
Match: A0A7S4A040_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A040_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 1.240e-17
Identity = 58/143 (40.56%), Postives = 76/143 (53.15%), Query Frame = 0
Query:  454 INMCRVPRENLEKWLNEPFFDEALKGCFVKLGVGMR---NNQAVYRMLRXXXXXXXXXXXXCEVEGVTKYKRQYTMPGGMPTTKALTLRFGSAKRDFRMDTISNHRITEGEFRAWRQACAKDRVKVPTPQECQARYARAKNAV 593
            IN  R+PR+ LEKW+ EPFFD A+ GCFV+LGVG       +  Y++              CE+ GV +YK  Y + G   T KAL LR G   R +RM+ ISNHR T  E   W+      R K+P+ +E   R AR +  V
Sbjct:  146 INKLRLPRKLLEKWVEEPFFDTAVVGCFVRLGVGKAPGLRGEPQYKV--------------CEIIGVGEYKHSYAL-GEFQTKKALLLRIGRNTRLWRMNVISNHRFTPDELNEWQSTMFAARQKIPSAEEISKRKARMRETV 273          
BLAST of jgi.p|Trimin1|348615 vs. uniprot
Match: UPI000A2A9D37 (RNA polymerase-associated protein RTF1 homolog n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A9D37)

HSP 1 Score: 98.2 bits (243), Expect = 2.790e-17
Identity = 52/158 (32.91%), Postives = 89/158 (56.33%), Query Frame = 0
Query:  450 TLNDINMCRVPRENLEKWLNEPFFDEALKGCFVKLGVGMRNNQAVYRMLRXXXXXXXXXXXXCEVEGVTKYKRQYTMPGGMPTTKALTLRFGSAKRDFRMDTISNHRITEGEFRAWRQACAKDRVKVPTPQECQARYARAKNAVTRHQYTVEHVAEMV 607
            +++D+   R+ R  +EKW++ PFF +A+ GC+V++G+G    + VYR                E+  V +  + Y + G   T K L LR G+ +R FR++ +SN RITE EF+ WR+ C +  + VPT ++ + + A  KNAV  + Y  + + ++V
Sbjct:  293 SVDDLERIRLSRHKMEKWVHMPFFGDAVVGCYVRIGIGSCEGRPVYRA--------------AEIRDVVETAKVYNL-GSTKTNKGLKLRHGAQERVFRLEFVSNQRITETEFQRWREECEEHXIPVPTLEDIERKEADIKNAVN-YMYNEDDIEKIV 434          
BLAST of jgi.p|Trimin1|348615 vs. uniprot
Match: V5G7S9_ANOGL (RNA polymerase-associated protein (Fragment) n=3 Tax=Anoplophora glabripennis TaxID=217634 RepID=V5G7S9_ANOGL)

HSP 1 Score: 93.6 bits (231), Expect = 3.500e-16
Identity = 52/142 (36.62%), Postives = 80/142 (56.34%), Query Frame = 0
Query:  453 DINMCRVPRENLEKWLNEPFFDEALKGCFVKLGVGMRNNQAVYRMLRXXXXXXXXXXXXCEVEGVTKYKRQYTMPGGMPTTKALTLRFGSAKRDFRMDTISNHRITEGEFRAWRQACAKDRVKVPTPQECQARYARAKNAVT 594
            D+N+ R+ R  LE++++ PFFD   KGCFVK+G+G  NN +VYR+               EV GV +  + Y + G   T K L +R GS++R FR++ ISN   TE E+  W +A A    ++PT  + + + A  K A++
Sbjct:  151 DLNLIRLSRHKLERFVHMPFFDRIAKGCFVKVGIGQHNNASVYRV--------------AEVIGVYETAKIYNL-GNTKTNKGLKVRHGSSERVFRLEFISNQEFTESEYLKWIEASAAAGNELPTKAKIEQKQADIKEAIS 277          
BLAST of jgi.p|Trimin1|348615 vs. uniprot
Match: F0YGR5_AURAN (Plus3 domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YGR5_AURAN)

HSP 1 Score: 93.2 bits (230), Expect = 1.040e-15
Identity = 58/157 (36.94%), Postives = 81/157 (51.59%), Query Frame = 0
Query:  439 PAVAMAWESA--VTLNDINMCRVPRENLEKWLNEPFFDEALKGCFVKLGVGMRNNQAVYRMLRXXXXXXXXXXXXCEVEGVTKYKRQYTMPGGMPTTKALTLRFGSAKRDFRMDTISNHRITEGEFRAWRQACAKDRVKVPTPQECQARYARAKNAV 593
            PA A   + A  V  + +   R+PR  LEKW+ EPFF++A+ GCFV+LGVG    +      +            CE+  V +YK  Y   G   T KAL LR G  +R +RM  ISNHR T+ E + W+     +R K+P+  E   R A+ + AV
Sbjct:  186 PATASDDDDAPHVACSALGKLRLPRSLLEKWVEEPFFEKAVVGCFVRLGVG----KIPASPSKAPGARGEPQYKVCEIISVDEYKHAYPF-GEFETRKALMLRIGRNQRLWRMSVISNHRFTDAELQEWQSIMRTERQKIPSVIEINRRKAQMRKAV 337          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348615 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CH32_9STRA0.000e+0100.00Plus-3 domain-containing protein n=1 Tax=Tribonema... [more]
A0A6H5JFI3_9PHAE1.220e-2831.78Plus3 domain-containing protein n=1 Tax=Ectocarpus... [more]
D8LLT9_ECTSI8.720e-2738.78Plus3 domain-containing protein (Fragment) n=1 Tax... [more]
A0A7S2SHN1_9STRA6.960e-1926.38Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S4A0N2_9STRA9.950e-1940.56Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S4A086_9STRA4.490e-1840.56Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A7S4A040_9STRA1.240e-1740.56Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
UPI000A2A9D372.790e-1732.91RNA polymerase-associated protein RTF1 homolog n=1... [more]
V5G7S9_ANOGL3.500e-1636.62RNA polymerase-associated protein (Fragment) n=3 T... [more]
F0YGR5_AURAN1.040e-1536.94Plus3 domain-containing protein n=1 Tax=Aureococcu... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 679..720
NoneNo IPR availableCOILSCoilCoilcoord: 631..670
NoneNo IPR availableCOILSCoilCoilcoord: 160..180
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 97..134
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 882..904
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 409..430
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 350..376
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 858..881
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 806..820
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 379..397
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 293..331
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 755..769
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 821..835
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 256..440
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..153
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 751..967
NoneNo IPR availablePANTHERPTHR13115:SF8RNA POLYMERASE-ASSOCIATED PROTEIN RTF1 HOMOLOGcoord: 45..330
NoneNo IPR availablePANTHERPTHR13115UNCHARACTERIZEDcoord: 45..330
NoneNo IPR availablePANTHERPTHR13115:SF8RNA POLYMERASE-ASSOCIATED PROTEIN RTF1 HOMOLOGcoord: 327..820
NoneNo IPR availablePANTHERPTHR13115UNCHARACTERIZEDcoord: 327..820
IPR004343Plus-3 domainSMARTSM00719rtf1coord: 448..571
e-value: 1.2E-24
score: 97.9
IPR004343Plus-3 domainPFAMPF03126Plus-3coord: 453..569
e-value: 5.7E-28
score: 97.6
IPR004343Plus-3 domainPROSITEPS51360PLUS3coord: 448..594
score: 30.878389
IPR036128Plus3-like superfamilyGENE3D3.90.70.200coord: 448..591
e-value: 1.1E-35
score: 124.3
IPR036128Plus3-like superfamilySUPERFAMILY159042Plus3-likecoord: 449..500
IPR036128Plus3-like superfamilySUPERFAMILY159042Plus3-likecoord: 499..593

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_28contigContig_28:385006..411763 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348615mRNA_8992Tribonema minus UTEX_B_3156 mRNAContig_28 385006..412318 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|348615|estExt_Genemark1.C_Ctg_280042 ID=Trimin1|348615|estExt_Genemark1.C_Ctg_280042|Name=jgi.p|Trimin1|348615|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=968bp
MSSLRLALKRSLDVNHDDSEASSDPNARPAPPPVAVKRPAAARKPARKPA
PKRRKVHSDSEELGEDEDTGAHSESGTSSGSDDGRKGGGGGAARSGSNRR
LSVNASATKGGARQQRRGSGARSRSPSASPAASSEDTDAYDEDLYENEED
KAKLMAMPEVERENILYERAERRRERRERRATLQRVKARIGTKGAATAAV
FSTQVVSVKARIGTKGAATAAAPRALSLKQARIGTKGAATAAAGRKTAAA
EAARKLAAAATAYTDTSSESEQEEVPKPGTRSAPVPAKAERGASSDDSSD
GDKPQRSSRDQRAASPNRDARRRRSDSESGASAHSSDRSGRARGARGARG
QQRSSRQRASSGSSGSSRSRSRSRSRSSSPARGRRERDRRAGSKRESSPS
SDSDSGSDSASPTRRRGRADSPEERHSGRTQAESGPPAPAVAMAWESAVT
LNDINMCRVPRENLEKWLNEPFFDEALKGCFVKLGVGMRNNQAVYRMLRV
GMRNNQAVYRMCEVEGVTKYKRQYTMPGGMPTTKALTLRFGSAKRDFRMD
TISNHRITEGEFRAWRQACAKDRVKVPTPQECQARYARAKNAVTRHQYTV
EHVAEMVKRNAEQGRVLSSAALAKLKLERAIGAAVMRLEKEEADLAAARA
EKAEADLAAARAEVENATMASRGGALRELEEAQEKHLAASAEVDQLRDDL
AKLEEEEARKKARMEDAQGRAIKKARMEDAQGRAIKMRSLNARNRGANIA
IDAATARRRQSQENGQAKTSDPFARRACRPKILWAVGTSPTRGRSPVPPE
EQQAEQLPQEQEEDEDGAFDGAEETKSREALSDLQRDAAAEIATAGMGEL
AIQAPDNANGGMDTNGADKNGGMTPRTQQLHKKHSFGGEDPIAQQLHKKH
SFGGEDPIAQLGGEDPIAQAAREEEAERAAAAAQQAPVEPRAATNRRAGM
SLSDYLKQARKLQEQMG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004343Plus-3_dom
IPR036128Plus3-like_sf