Trimin1|348479|estExt_Genemark1.C_Ctg_250047 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|348479
Unique NameTrimin1|348479|estExt_Genemark1.C_Ctg_250047
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length488
Homology
BLAST of jgi.p|Trimin1|348479 vs. uniprot
Match: A0A835Z2C7_9STRA (SET domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2C7_9STRA)

HSP 1 Score: 551 bits (1419), Expect = 2.810e-191
Identity = 487/487 (100.00%), Postives = 487/487 (100.00%), Query Frame = 0
Query:    1 MLYFVDPYAMTGAHLGVLQWARANGCPWDESTCSFPAERGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAHTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEHAPSWDRYIPDAEGMSDKDCGSSDQESGDSVSNPCDGCMTSVASAAATPSSPTALGESRAVDDTAGDQDREAAFYEMLAWLRAGGAAFPPLATRADAASGWGVYALEAVPPGALLITIPKHLLITLEVAKESEIGRKICEADVELGATRLTLLSIFLLTDRRRAESAYLPYYATLPPAHAASPLFWPAARREALLEGSYTLIQDWEEDLEADYDDVCAAVPELKTDHGITLADFKWARCAAGGARFAAMTDQHCPCNTLA 487
            MLYFVDPYAMTGAHLGVLQWARANGCPWDESTCSFPAERGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAHTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEHAPSWDRYIPDAEGMSDKDCGSSDQESGDSVSNPCDGCMTSVASAAATPSSPTALGESRAVDDTAGDQDREAAFYEMLAWLRAGGAAFPPLATRADAASGWGVYALEAVPPGALLITIPKHLLITLEVAKESEIGRKICEADVELGATRLTLLSIFLLTDRRRAESAYLPYYATLPPAHAASPLFWPAARREALLEGSYTLIQDWEEDLEADYDDVCAAVPELKTDHGITLADFKWARCAAGGARFAAMTDQHCPCNTLA
Sbjct:    1 MLYFVDPYAMTGAHLGVLQWARANGCPWDESTCSFPAERGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAHTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEHAPSWDRYIPDAEGMSDKDCGSSDQESGDSVSNPCDGCMTSVASAAATPSSPTALGESRAVDDTAGDQDREAAFYEMLAWLRAGGAAFPPLATRADAASGWGVYALEAVPPGALLITIPKHLLITLEVAKESEIGRKICEADVELGATRLTLLSIFLLTDRRRAESAYLPYYATLPPAHAASPLFWPAARREALLEGSYTLIQDWEEDLEADYDDVCAAVPELKTDHGITLADFKWARCAAGGARFAAMTDQHCPCNTLA 487          
BLAST of jgi.p|Trimin1|348479 vs. uniprot
Match: A0A7S4D6X9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D6X9_HETAK)

HSP 1 Score: 118 bits (296), Expect = 4.660e-25
Identity = 72/182 (39.56%), Postives = 108/182 (59.34%), Query Frame = 0
Query:  294 DQDREAAFYEMLAWLRAGGAAFPPLATRADAASGWGVYALEAVPPGALLITIPKHLLITLEVAKESEIGRKICEADVELGATRLTLLSIFLLTDRRRAESAYLPYYATLPPAHAASPLFWPAARREALLEGSYTL--IQDWEEDLEADYDDVCAAVPELKTDHGITLADFKWARCAAGGARF 473
            +QDR   F  +++WLRAGGA FP L  +  +    GV+A   +P    ++ IP++ L+TLE AK++EIG K+ +A  EL A +   LSI +L DR+ A+S + PYY TLP +++  P+FW     E LLEGS+ L  I+D + ++ ADYD++C   PE       ++ +F WAR       F
Sbjct:   34 EQDR---FDALVSWLRAGGARFPDLFLQRYSEDNRGVHAKRQIPANRQVMVIPQNFLLTLEKAKQTEIGLKLEKA--ELSARKHCYLSILVLIDRKDAQSFFQPYYRTLPRSYSNMPIFWNENDLE-LLEGSHILSQIEDRKRNIRADYDEICRVAPEFSE---FSIREFSWARMVVASRNF 206          
BLAST of jgi.p|Trimin1|348479 vs. uniprot
Match: A0A7R9UGQ6_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UGQ6_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 1.620e-18
Identity = 66/169 (39.05%), Postives = 87/169 (51.48%), Query Frame = 0
Query:  307 WLRAGGAAFPPLATRADAASGWGVYALEAVPPGALLITIPKHLLITLEVAKESEIGRKICEADVELGATRLTLLSIFLLTDRRRAESAYLPYYATLPPAHAASPLFWPAARREALLEGSYTL--IQDWEEDLEADYDDVCAAVPELKTDHGITLADFKWARCAAGGARF 473
            WL   GA FP L  +       GV+A E +    L I+IP + LIT+E+ K++EIGRKI +A ++L A +   L +F+LTD R   S + PYY  LP   +  P+FW        LEGSY L  I D +E +  DYD +C   PE       TL  F WAR       F
Sbjct:   35 WLLDNGAEFPQLEIKCYDDEVRGVHAKEDIKSDTLCISIPLNCLITVEMGKDTEIGRKILDARLDLDAPKHVFLMLFMLTDMRNESSFFKPYYDILPQKMSNMPIFWTDDELR-YLEGSYMLQQIADRKEAIIEDYDAICDIAPEFS--EIATLDGFMWARMCVCSRNF 200          
BLAST of jgi.p|Trimin1|348479 vs. uniprot
Match: A0A835ZC89_9STRA (SET domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC89_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 4.190e-18
Identity = 64/161 (39.75%), Postives = 88/161 (54.66%), Query Frame = 0
Query:  307 WLRAGGAAFPPLATRADAASGWGVYALEAVPPGALLITIPKHLLITLEVAKESEIGRKICEADVELGATRLTLLSIFLLTDRRRAESAYLPYYATLPPAHAASPLFWPAARREALLEGSYTLIQ--DWEEDLEADYDDVCAAVPELKTDHGITLADFKWAR 465
            WL   GA FP L   +      G++A   +P    +I +P   LIT+E+ KE+ +GR +  AD +L A +   L +FLLTDR RA+S + PYY  LPP+ +  P+FW  A+  A L GS+ + Q  D    + ADY  VC A P   +    TL DF WAR
Sbjct:   46 WLLDNGAKFPKLEVHSYDEEFRGMHASCDLPADERIIEVPLKCLITVEMGKETPVGRAVVAADPDLDAPKHIYLMLFLLTDRLRADSFFRPYYDMLPPSLSNMPVFWEDAKL-AWLRGSFMVRQVADRRAAIAADYAAVCEAYPPFTST--ATLEDFMWAR 203          
BLAST of jgi.p|Trimin1|348479 vs. uniprot
Match: W7THN2_9STRA (Set domain containing protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7THN2_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 4.250e-18
Identity = 64/190 (33.68%), Postives = 99/190 (52.11%), Query Frame = 0
Query:  288 VDDTAGDQDREAA--FYEMLAWLRAGGAAFPPLATRADAASGWGVYALEAVPPGALLITIPKHLLITLEVAKESEIGRKICEADVELGATRLTLLSIFLLTDRRRAESAYLPYYATLPPAHAASPLFWPAARREALLEGSYTL--IQDWEEDLEADYDDVCAAVPELKTDHGITLADFKWARCAAGGARF 473
            V  + G  D  A   +   L WL   GA FP L  R   +   GV+A EA+    +++ IP   LIT+E+ KES++G+ +  +++ L A +   L +F+LTDRR   S + PYY  LP + +  P+FW      A L+GS+ L  I++ +  +EADY  +    P L +    ++ +FKWAR       F
Sbjct:    7 VSSSGGTADESAVNKYDRFLKWLLDNGAHFPLLELREYESDVRGVHAKEALAGDQVVVEIPLRCLITVEMGKESDVGKAVLASNLPLDAPKHIFLMLFMLTDRRNPSSFFKPYYDILPSSLSNMPIFW-TDEELAYLKGSHLLTQIEERKRAIEADYAAIADVAPSLPSI--CSVEEFKWARMCVCSRNF 193          
BLAST of jgi.p|Trimin1|348479 vs. uniprot
Match: A0A6A3F3P8_9STRA (Uncharacterized protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3F3P8_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 1.560e-17
Identity = 60/179 (33.52%), Postives = 94/179 (52.51%), Query Frame = 0
Query:  303 EMLAWLRAGGAAFPPLATRADAASGWGVYALEAVPPGALLITIPKHLLITLEVAKESEIGRKICEADVELGATRLTLLSIFLLTDRRRAESAYLP-YYATLPPAHAASPLFWPAARREALLEGSYTL--IQDWEEDLEADYDDVCAAVPELKTDHGITLADFKWARCAAGGARFAAMTD 478
            E++ WL A GA    LA +  A    GV++ + + PG  ++ +PK  L+T+E+ K+++IGRK+    V+  A +   L +FLLTD   AE+++   YY+TLPP  +  P+FW +      L+GSY +  IQ+ +  +  DYD +C   P        +L  F WAR       F    D
Sbjct:   37 ELIQWLEANGADTKKLALQEYAPEVRGVHSRKVLAPGERILVVPKKCLVTVEMGKQTDIGRKLLARSVDFVAPKHIFLMMFLLTDMEHAETSFFRNYYSTLPPTLSNMPIFW-SDEELGWLKGSYIIQQIQERKAAIRKDYDVICRVDPSFAR---FSLDRFSWARMIVCSRNFGLTID 211          
BLAST of jgi.p|Trimin1|348479 vs. uniprot
Match: A0A4D9D3E6_9STRA (SET domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D3E6_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 2.090e-17
Identity = 65/190 (34.21%), Postives = 98/190 (51.58%), Query Frame = 0
Query:  288 VDDTAGDQDREAA--FYEMLAWLRAGGAAFPPLATRADAASGWGVYALEAVPPGALLITIPKHLLITLEVAKESEIGRKICEADVELGATRLTLLSIFLLTDRRRAESAYLPYYATLPPAHAASPLFWPAARREALLEGSYTLIQDWEED--LEADYDDVCAAVPELKTDHGITLADFKWARCAAGGARF 473
            V  + G  D  A   +   L WL   GA FP L  R   +   GV+A EA+    +++ IP   LIT+E+ KES++G+ +  +++ L A +   L +F+LTDRR   S + PYY  LP + +  P+FW      A L+GS+ L+Q  E    +EADY  +    P L +    ++ +FKWAR       F
Sbjct:    7 VSSSGGTADESAVNKYDRFLKWLLDNGAHFPLLELREYESDVRGVHAKEALAGDQVVVEIPLRCLITVEMGKESDVGKAVLASNLPLDAPKHIFLMLFMLTDRRNPSSFFKPYYDILPSSLSNMPIFW-TDEELAYLKGSHLLVQIEERKRAIEADYAAIADVAPSLPSI--CSVEEFKWARMCVCSRNF 193          
BLAST of jgi.p|Trimin1|348479 vs. uniprot
Match: A0A7S1XR30_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XR30_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 4.030e-17
Identity = 63/175 (36.00%), Postives = 89/175 (50.86%), Query Frame = 0
Query:  307 WLRAGGAAFPPLATRADAASGWGVYALEAVPPGALLITIPKHLLITLEVAKESEIGRKICEADVELGATRLTLLSIFLLTDRRRAESAYLPYYATLPPAHAASPLFWPAARREALLEGSYTLIQ--DWEEDLEADYDDVCAAVPELKTDHGITLAD-FKWARCAAGGARFAAMTD 478
            WL + GA FP L  +       GV+A E +P   + I IP   LIT+E+ K++E+GRKI +A ++L A +   L +F+LTD ++  S + PYY  LP      P+FW        LEGSY L Q  D +E +  DY  +C   PE      I  A+ F WAR       F  + +
Sbjct:   34 WLLSNGAEFPQLEIKCYDDEVRGVHAKENIPGDTICIKIPLKCLITVEMGKDTEVGRKIMDARLDLDAPKHVFLMLFMLTDMKQENSFFKPYYDILPQEMRNMPIFWDEHELR-WLEGSYMLTQIADRKEAIVEDYHAICEIAPEFAD---IATAERFMWARMCVCSRNFGLIVN 204          
BLAST of jgi.p|Trimin1|348479 vs. uniprot
Match: A0A425CBW5_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A425CBW5_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 3.200e-16
Identity = 64/198 (32.32%), Postives = 98/198 (49.49%), Query Frame = 0
Query:  284 ESRAVDDTAGDQDREAAFYEMLAWLRAGGAAFPPLATRADAASGWGVYALEAVPPGALLITIPKHLLITLEVAKESEIGRKICEADVELGATRLTLLSIFLLTDRRRAESAYLP-YYATLPPAHAASPLFWPAARREALLEGSYTL--IQDWEEDLEADYDDVCAAVPELKTDHGITLADFKWARCAAGGARFAAMTD 478
            ES+ VDD  G         E++ WL   GA    L  +  A    GV++ + + PG  ++ +PK  LIT+E+ K+++IGRK+   +V   A +   L +FLLTD    E+++   YY+TLP   +  P+FW + +    L+GSY +  IQ+ +  +  DYD +C   P        TL  F WAR       F    D
Sbjct:   51 ESKKVDDVVGQ--------ELIQWLDKNGADSKKLTLQEYAPEVRGVHSCKVLVPGERILVVPKKCLITVEMGKKTDIGRKLLARNVNFVAPKHIYLMMFLLTDMEHVETSFFRNYYSTLPSTLSNMPIFW-SEKELQWLKGSYIIQQIQERKAAIRKDYDVICRVDPSFTR---FTLDRFSWARMIVCSRNFGLTID 236          
BLAST of jgi.p|Trimin1|348479 vs. uniprot
Match: A0A7S3JSP0_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JSP0_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 5.500e-16
Identity = 54/136 (39.71%), Postives = 78/136 (57.35%), Query Frame = 0
Query:  345 IPKHLLITLEVAKESEIGRKICEADVELGATRLTLLSIFLLTDRRRAESAYLPYYATLPPAHAASPLFWPAARREALLEGSYTLIQDWEEDLEA--DYDDVCAAVPELKTDHGITLADFKWARCAAGGARFAAMTD 478
            IP   LIT+E+ KE+E+GR + EAD+EL A +   L +FLLTDR+  +S + PYYA LP   +  P+FW A   E L +GS+ L Q  E +L    DY+ +C    + +  +  TL +F+WAR       F  + D
Sbjct:    3 IPLDCLITVEMGKETEVGRAVMEADLELDAPKHVFLMLFLLTDRKNKDSRFQPYYAMLPATLSNMPVFWRADELEKL-QGSFLLTQIEERNLAIAKDYESICKIYSDFE--NIATLDEFRWARMCVCSRNFGIVID 135          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348479 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z2C7_9STRA2.810e-191100.00SET domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S4D6X9_HETAK4.660e-2539.56Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7R9UGQ6_9STRA1.620e-1839.05Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A835ZC89_9STRA4.190e-1839.75SET domain-containing protein n=1 Tax=Tribonema mi... [more]
W7THN2_9STRA4.250e-1833.68Set domain containing protein n=1 Tax=Nannochlorop... [more]
A0A6A3F3P8_9STRA1.560e-1733.52Uncharacterized protein n=2 Tax=Phytophthora fraga... [more]
A0A4D9D3E6_9STRA2.090e-1734.21SET domain-containing protein n=1 Tax=Nannochlorop... [more]
A0A7S1XR30_9STRA4.030e-1736.00Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A425CBW5_9STRA3.200e-1632.32Uncharacterized protein n=2 Tax=Peronospora effusa... [more]
A0A7S3JSP0_9STRA5.500e-1639.71Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001214SET domainPFAMPF00856SETcoord: 327..454
e-value: 7.2E-6
score: 26.5
IPR036770Ankyrin repeat-containing domain superfamilyGENE3D1.25.40.20coord: 8..237
e-value: 3.9E-8
score: 34.2
NoneNo IPR availableGENE3D3.90.1410.10set domain protein methyltransferase, domain 1coord: 271..480
e-value: 7.7E-27
score: 96.3
NoneNo IPR availablePANTHERPTHR46586ANKYRIN REPEAT-CONTAINING PROTEINcoord: 9..329
NoneNo IPR availablePANTHERPTHR46586:SF3ANKYRIN REPEAT-CONTAINING PROTEINcoord: 9..329
NoneNo IPR availableCDDcd10527SET_LSMTcoord: 318..468
e-value: 3.60882E-26
score: 104.453
NoneNo IPR availableSUPERFAMILY140860Pseudo ankyrin repeat-likecoord: 126..206
IPR046341SET domain superfamilySUPERFAMILY82199SET domaincoord: 303..467

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_25contigContig_25:385867..393210 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348479mRNA_6645Tribonema minus UTEX_B_3156 mRNAContig_25 384452..393210 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|348479|estExt_Genemark1.C_Ctg_250047 ID=Trimin1|348479|estExt_Genemark1.C_Ctg_250047|Name=jgi.p|Trimin1|348479|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=488bp
MLYFVDPYAMTGAHLGVLQWARANGCPWDESTCSFPAERGHLAVVQWARA
NGGPWDEQTCWRAASNGHLAVLHWARAAGCPWDWARANGCAWDARTCAST
AIEGHFEVLQWARAAGCPWDAHTAASAAHVGDLAILQWARAGGCPWDAET
CSYAAVKGRLHVLQWARANGCPWDERTCSSAAASGHLEVLQWARANGCPW
DCDTTYLAKQEHWQHVLDWARANGCPEHAPSWDRYIPDAEGMSDKDCGSS
DQESGDSVSNPCDGCMTSVASAAATPSSPTALGESRAVDDTAGDQDREAA
FYEMLAWLRAGGAAFPPLATRADAASGWGVYALEAVPPGALLITIPKHLL
ITLEVAKESEIGRKICEADVELGATRLTLLSIFLLTDRRRAESAYLPYYA
TLPPAHAASPLFWPAARREALLEGSYTLIQDWEEDLEADYDDVCAAVPEL
KTDHGITLADFKWARCAAGGARFAAMTDQHCPCNTLA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001214SET_dom
IPR036770Ankyrin_rpt-contain_sf
IPR046341SET_dom_sf