Trimin1|348283|estExt_Genemark1.C_Ctg_220046 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|348283
Unique Name	Trimin1\|348283\|estExt_Genemark1.C_Ctg_220046
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	935

Homology

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BLAST of jgi.p|Trimin1|348283 vs. uniprot
Match: A0A835Z2M1_9STRA (EF-hand domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2M1_9STRA)

HSP 1 Score: 1540 bits (3987), Expect = 0.000e+0
Identity = 898/898 (100.00%), Postives = 898/898 (100.00%), Query Frame = 0

Query:   37 APPMGLRVLVPPPAWLAAAAPVYAPFAGGALVQSPPMAQHAPAVALPLLLTNTGGTGGSGSGGRQPSAAGDAMDVEPPLQAQLAAARAHMQRQAKARVPALAAASQASAITVVEQHNQAMRDAAINIALVMLYRDERNVNGHVAYVLIVLFEGRDGAAPGLAGSSKGGEARRCLLLHGCPLPLPLPPMPPVFVSSKGSATAGACCAMGGDCXXXXXXXXXRGGREKWRRREGVGAAGAPVAEERICKQEWDGRSAALAQLALRVKGVVMKKQASDDDTCIVQMSEEEADVLQYAYGANLHCDSPRYPHCHSYAANSPSTQVXXXXXXXXXXXXXXXTKLAGKGVLLKLLQAADAAERCARRSVGSGCSTRSTCGMRASHAKSAEPPTREAQDTVGSAPGAETAAAKLPPRELAALFELFDADGSGTVDGAEFLSLFFKVTDELRIDGLRAQRMAAYRRRYMKEHNIIDAALLDKDLLLGDSDDDDAAPTSTVGGPHTSPMSHRALTTDPLKRVHDVTLATSPPFLSSATTEDTLDLGRPSAAPDSPQTASPXXXXXXXXXXXXXXVAATLPRLWRRLAAALYVRGGVRGAVFEGVRANGPYGAERLRALVRDVARVAVSRAEACAVHEAXXXXXXXXXXXXXXXXXXXXXXXXXXQAGVDGHDLVDMFRQLCAEEQLRQXXXXXXXXXXXQLLLQDAVLTKLAVAVKRYYDGGKARPPLSPFKASDALTCKAARCALREVFGLHLRRKDILALCACCSADGAPGGTLDCRRFLRMLTRGANHRRARPVVRQPLPVARHPLAAPPPPLMLSAADVQLQLEPPTPLQPKAQLVATDDAATGTSPLESEVALAPLQAAKLLPVSDADDDSDYMIVADNDVMDGRELPVRALVAGGDPCVIC 934
            APPMGLRVLVPPPAWLAAAAPVYAPFAGGALVQSPPMAQHAPAVALPLLLTNTGGTGGSGSGGRQPSAAGDAMDVEPPLQAQLAAARAHMQRQAKARVPALAAASQASAITVVEQHNQAMRDAAINIALVMLYRDERNVNGHVAYVLIVLFEGRDGAAPGLAGSSKGGEARRCLLLHGCPLPLPLPPMPPVFVSSKGSATAGACCAMGGDCXXXXXXXXXRGGREKWRRREGVGAAGAPVAEERICKQEWDGRSAALAQLALRVKGVVMKKQASDDDTCIVQMSEEEADVLQYAYGANLHCDSPRYPHCHSYAANSPSTQVXXXXXXXXXXXXXXXTKLAGKGVLLKLLQAADAAERCARRSVGSGCSTRSTCGMRASHAKSAEPPTREAQDTVGSAPGAETAAAKLPPRELAALFELFDADGSGTVDGAEFLSLFFKVTDELRIDGLRAQRMAAYRRRYMKEHNIIDAALLDKDLLLGDSDDDDAAPTSTVGGPHTSPMSHRALTTDPLKRVHDVTLATSPPFLSSATTEDTLDLGRPSAAPDSPQTASPXXXXXXXXXXXXXXVAATLPRLWRRLAAALYVRGGVRGAVFEGVRANGPYGAERLRALVRDVARVAVSRAEACAVHEAXXXXXXXXXXXXXXXXXXXXXXXXXXQAGVDGHDLVDMFRQLCAEEQLRQXXXXXXXXXXXQLLLQDAVLTKLAVAVKRYYDGGKARPPLSPFKASDALTCKAARCALREVFGLHLRRKDILALCACCSADGAPGGTLDCRRFLRMLTRGANHRRARPVVRQPLPVARHPLAAPPPPLMLSAADVQLQLEPPTPLQPKAQLVATDDAATGTSPLESEVALAPLQAAKLLPVSDADDDSDYMIVADNDVMDGRELPVRALVAGGDPCVIC
Sbjct:   37 APPMGLRVLVPPPAWLAAAAPVYAPFAGGALVQSPPMAQHAPAVALPLLLTNTGGTGGSGSGGRQPSAAGDAMDVEPPLQAQLAAARAHMQRQAKARVPALAAASQASAITVVEQHNQAMRDAAINIALVMLYRDERNVNGHVAYVLIVLFEGRDGAAPGLAGSSKGGEARRCLLLHGCPLPLPLPPMPPVFVSSKGSATAGACCAMGGDCXXXXXXXXXRGGREKWRRREGVGAAGAPVAEERICKQEWDGRSAALAQLALRVKGVVMKKQASDDDTCIVQMSEEEADVLQYAYGANLHCDSPRYPHCHSYAANSPSTQVXXXXXXXXXXXXXXXTKLAGKGVLLKLLQAADAAERCARRSVGSGCSTRSTCGMRASHAKSAEPPTREAQDTVGSAPGAETAAAKLPPRELAALFELFDADGSGTVDGAEFLSLFFKVTDELRIDGLRAQRMAAYRRRYMKEHNIIDAALLDKDLLLGDSDDDDAAPTSTVGGPHTSPMSHRALTTDPLKRVHDVTLATSPPFLSSATTEDTLDLGRPSAAPDSPQTASPXXXXXXXXXXXXXXVAATLPRLWRRLAAALYVRGGVRGAVFEGVRANGPYGAERLRALVRDVARVAVSRAEACAVHEAXXXXXXXXXXXXXXXXXXXXXXXXXXQAGVDGHDLVDMFRQLCAEEQLRQXXXXXXXXXXXQLLLQDAVLTKLAVAVKRYYDGGKARPPLSPFKASDALTCKAARCALREVFGLHLRRKDILALCACCSADGAPGGTLDCRRFLRMLTRGANHRRARPVVRQPLPVARHPLAAPPPPLMLSAADVQLQLEPPTPLQPKAQLVATDDAATGTSPLESEVALAPLQAAKLLPVSDADDDSDYMIVADNDVMDGRELPVRALVAGGDPCVIC 934

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BLAST of jgi.p|Trimin1|348283 vs. uniprot
Match: A0A7S4D453_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D453_HETAK)

HSP 1 Score: 53.9 bits (128), Expect = 4.490e-5
Identity = 25/47 (53.19%), Postives = 33/47 (70.21%), Query Frame = 0

Query:  442 KLPPRELAALFELFDADGSGTVDGAEFLSLFFKVTDELRIDGLRAQR 488
            +L P E+ AL E+FD DG GT+D AEFLSLFF++ D+ R +    QR
Sbjct:   69 QLSPAEVGALMEVFDLDGDGTIDSAEFLSLFFRMVDQARRERAGRQR 115

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|348283 vs. uniprot

BLAST of jgi.p|Trimin1|348283 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A835Z2M1_9STRA	0.000e+0	100.00	EF-hand domain-containing protein n=1 Tax=Tribonem...	[more]
A0A7S4D453_HETAK	4.490e-5	53.19	Hypothetical protein (Fragment) n=1 Tax=Heterosigm...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002048	EF-hand domain	SMART	SM00054	efh_1	coord: 447..475 e-value: 3.2E-4 score: 30.0
IPR002048	EF-hand domain	PROSITE	PS50222	EF_HAND_2	coord: 443..478 score: 11.863342
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 558..603
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 581..603
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 519..545
None	No IPR available	PANTHER	PTHR13037	FORMIN	coord: 575..889
None	No IPR available	PANTHER	PTHR13037:SF21	PROTEIN CAPPUCCINO	coord: 575..889
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 456..468
IPR011992	EF-hand domain pair	SUPERFAMILY	47473	EF-hand	coord: 442..482

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_22	contig	Contig_22:357903..380135 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|348283	mRNA_6358	Tribonema minus UTEX_B_3156	mRNA	Contig_22 357903..380135 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|348283|estExt_Genemark1.C_Ctg_220046 ID=Trimin1|348283|estExt_Genemark1.C_Ctg_220046|Name=jgi.p|Trimin1|348283|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=935bp
MSAAAGGGAAAAGGGALSIAGSDFLSAAAGSAAGGTAPPMGLRVLVPPPA
WLAAAAPVYAPFAGGALVQSPPMAQHAPAVALPLLLTNTGGTGGSGSGGR
QPSAAGDAMDVEPPLQAQLAAARAHMQRQAKARVPALAAASQASAITVVE
QHNQAMRDAAINIALVMLYRDERNVNGHVAYVLIVLFEGRDGAAPGLAGS
SKGGEARRCLLLHGCPLPLPLPPMPPVFVSSKGSATAGACCAMGGDCSAA
AGSAAARGGREKWRRREGVGAAGAPVAEERICKQEWDGRSAALAQLALRV
KGVVMKKQASDDDTCIVQMSEEEADVLQYAYGANLHCDSPRYPHCHSYAA
NSPSTQVLMSKEEADALQHVYGTKLAGKGVLLKLLQAADAAERCARRSVG
SGCSTRSTCGMRASHAKSAEPPTREAQDTVGSAPGAETAAAKLPPRELAA
LFELFDADGSGTVDGAEFLSLFFKVTDELRIDGLRAQRMAAYRRRYMKEH
NIIDAALLDKDLLLGDSDDDDAAPTSTVGGPHTSPMSHRALTTDPLKRVH
DVTLATSPPFLSSATTEDTLDLGRPSAAPDSPQTASPPPPPPPPPPPLPP
PVAATLPRLWRRLAAALYVRGGVRGAVFEGVRANGPYGAERLRALVRDVA
RVAVSRAEACAVHEALARDRAATIAHRAEGRAAPDALARDRQAGVDGHDL
VDMFRQLCAEEQLRQQRRARRRERRKQLLLQDAVLTKLAVAVKRYYDGGK
ARPPLSPFKASDALTCKAARCALREVFGLHLRRKDILALCACCSADGAPG
GTLDCRRFLRMLTRGANHRRARPVVRQPLPVARHPLAAPPPPLMLSAADV
QLQLEPPTPLQPKAQLVATDDAATGTSPLESEVALAPLQAAKLLPVSDAD
DDSDYMIVADNDVMDGRELPVRALVAGGDPCVIC*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR002048	EF_hand_dom
IPR018247	EF_Hand_1_Ca_BS
IPR011992	EF-hand-dom_pair