Trimin1|348282|estExt_Genemark1.C_Ctg_220044 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|348282
Unique NameTrimin1|348282|estExt_Genemark1.C_Ctg_220044
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length400
Homology
BLAST of jgi.p|Trimin1|348282 vs. uniprot
Match: A0A836CIY8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIY8_9STRA)

HSP 1 Score: 557 bits (1436), Expect = 1.150e-196
Identity = 399/399 (100.00%), Postives = 399/399 (100.00%), Query Frame = 0
Query:    1 MVQTFERPDMLSYWAAEDDKQPDGDGMGEAEGKKRRRKRDTRKHPAAPVQCRSAYVLFSIHRRQELKEQRPDVKTRDLMGIIAQEWRALERGARERWQARAXXXXXXXXXEKAAYAGPLRVPSRRRWVSAHPDAPKKASNAYLEFCRARRPALQAHYPHVASAALSKMLAEAWARLSAEERAPFVACALVDKARYRSDMAAFTAAXXXXXXXXXXXALQQFSDAEXXXXXXXXXXXXXXXXXXXXCVNSSXXXXXXXXXXXXXANTGGVGVRGIGGWCSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDCEFGHRANDMVNERLGATSASAAEQGYDLLMSPGCDSLQXXXXXXXXXXXXXXXXXAGMHDGFAGDGDWLAAGDGDDDELQLCGLQDP 399
            MVQTFERPDMLSYWAAEDDKQPDGDGMGEAEGKKRRRKRDTRKHPAAPVQCRSAYVLFSIHRRQELKEQRPDVKTRDLMGIIAQEWRALERGARERWQARAXXXXXXXXXEKAAYAGPLRVPSRRRWVSAHPDAPKKASNAYLEFCRARRPALQAHYPHVASAALSKMLAEAWARLSAEERAPFVACALVDKARYRSDMAAFTAAXXXXXXXXXXXALQQFSDAEXXXXXXXXXXXXXXXXXXXXCVNSSXXXXXXXXXXXXXANTGGVGVRGIGGWCSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDCEFGHRANDMVNERLGATSASAAEQGYDLLMSPGCDSLQXXXXXXXXXXXXXXXXXAGMHDGFAGDGDWLAAGDGDDDELQLCGLQDP
Sbjct:    1 MVQTFERPDMLSYWAAEDDKQPDGDGMGEAEGKKRRRKRDTRKHPAAPVQCRSAYVLFSIHRRQELKEQRPDVKTRDLMGIIAQEWRALERGARERWQARAXXXXXXXXXEKAAYAGPLRVPSRRRWVSAHPDAPKKASNAYLEFCRARRPALQAHYPHVASAALSKMLAEAWARLSAEERAPFVACALVDKARYRSDMAAFTAAXXXXXXXXXXXALQQFSDAEXXXXXXXXXXXXXXXXXXXXCVNSSXXXXXXXXXXXXXANTGGVGVRGIGGWCSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDCEFGHRANDMVNERLGATSASAAEQGYDLLMSPGCDSLQXXXXXXXXXXXXXXXXXAGMHDGFAGDGDWLAAGDGDDDELQLCGLQDP 399          
BLAST of jgi.p|Trimin1|348282 vs. uniprot
Match: A0A3R7KJP5_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7KJP5_9STRA)

HSP 1 Score: 119 bits (297), Expect = 1.550e-27
Identity = 68/170 (40.00%), Postives = 104/170 (61.18%), Query Frame = 0
Query:   31 EGKKRRRKRDTRKHPAAPVQCRSAYVLFSIHRRQELKEQRPD-VKTRDLMGIIAQEWRALERGARERWQARAXXXXXXXXXEKAAYAGPLRVPSRRRWVSAHPDAPKKASNAYLEFCRARRPALQAHYPHVASAALSKMLAEAWARLSAEERAPFVACALVDKARYRSDM 199
            EG K+R KR  +K P AP + +S Y+LFS+ +R+E+K   P+  K  D+M  IA  W  +    ++ W+  A         E A+Y GPLRVP++R     HPDAPK+AS+A+L + +  RP ++A +  + +  +SK L EAWA+ + E++APFV    VD+ARY+ +M
Sbjct:   21 EGNKKR-KRLQKKAPGAPKRGKSPYILFSMEKREEIKATMPENSKVTDVMRAIADAWGKMSDEDKQPWKVAAEADKQRYEEEMASYDGPLRVPNKR--AKKHPDAPKRASSAFLFYSQVMRPRIKAEHQDMKNTEISKQLGEAWAKATDEQKAPFVEKEKVDRARYKREM 187          
BLAST of jgi.p|Trimin1|348282 vs. uniprot
Match: A0A5D6YAG9_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YAG9_9STRA)

HSP 1 Score: 119 bits (297), Expect = 1.790e-27
Identity = 68/170 (40.00%), Postives = 104/170 (61.18%), Query Frame = 0
Query:   31 EGKKRRRKRDTRKHPAAPVQCRSAYVLFSIHRRQELKEQRPD-VKTRDLMGIIAQEWRALERGARERWQARAXXXXXXXXXEKAAYAGPLRVPSRRRWVSAHPDAPKKASNAYLEFCRARRPALQAHYPHVASAALSKMLAEAWARLSAEERAPFVACALVDKARYRSDM 199
            +GKKR  KR  +K P AP + +S Y+LFS+ +R+E+K   PD  K  D+M  IA  W  +    ++ W+A A         E A+Y GPLRVP++R     HPDAPK+AS+A+L + +  RP ++A +  + +  +SK L EAW + + E++APFV    +D+ARY+ +M
Sbjct:   44 DGKKR--KRLQKKAPGAPKRGKSPYILFSMDKREEIKATMPDNSKVTDVMRAIADAWAKMTDEDKQPWKAAAESDKQRYEEEMASYDGPLRVPNKR--AKKHPDAPKRASSAFLFYSQVMRPRIKAEHQDMKNTEISKQLGEAWGKATDEQKAPFVEKEKLDRARYKREM 209          
BLAST of jgi.p|Trimin1|348282 vs. uniprot
Match: K3WVY6_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WVY6_GLOUD)

HSP 1 Score: 118 bits (295), Expect = 1.840e-27
Identity = 66/170 (38.82%), Postives = 105/170 (61.76%), Query Frame = 0
Query:   31 EGKKRRRKRDTRKHPAAPVQCRSAYVLFSIHRRQELKEQRPD-VKTRDLMGIIAQEWRALERGARERWQARAXXXXXXXXXEKAAYAGPLRVPSRRRWVSAHPDAPKKASNAYLEFCRARRPALQAHYPHVASAALSKMLAEAWARLSAEERAPFVACALVDKARYRSDM 199
            +GKKR  KR  +K P AP + +S Y+LFS+ +R+++K   P+  K  D+M  IA  W  +    ++ W+A A         E A+Y GPLRVP++R     HPDAPK+AS+A+L + +  RP ++A +  + +  +SK L EAW++ + E++APFV    +D+ARY+ +M
Sbjct:   19 DGKKR--KRLQKKAPGAPKRGKSPYILFSMDKREDIKATMPENAKVTDVMRAIADAWAKMSDDDKQPWKAAAEADKQRYEEEMASYDGPLRVPNKR--AKKHPDAPKRASSAFLFYSQVMRPRIKAEHQDMKNTEISKQLGEAWSKATDEQKAPFVEKEKLDRARYKREM 184          
BLAST of jgi.p|Trimin1|348282 vs. uniprot
Match: M4BDC0_HYAAE (Uncharacterized protein n=22 Tax=Peronosporaceae TaxID=4777 RepID=M4BDC0_HYAAE)

HSP 1 Score: 118 bits (296), Expect = 2.860e-27
Identity = 69/172 (40.12%), Postives = 104/172 (60.47%), Query Frame = 0
Query:   29 EAEGKKRRRKRDTRKHPAAPVQCRSAYVLFSIHRRQELKEQRPD-VKTRDLMGIIAQEWRALERGARERWQARAXXXXXXXXXEKAAYAGPLRVPSRRRWVSAHPDAPKKASNAYLEFCRARRPALQAHYPHVASAALSKMLAEAWARLSAEERAPFVACALVDKARYRSDM 199
            EA G K+R KR  +K P AP + +S Y+LFS+ +R+E+K   P+  K  D+M  IA  W  +    ++ W+  A         E AAY GPLRVP++R     HPDAPK+AS+A+L + +  RP ++A +  + +  +SK L EAW + + E++APFV    VD+ARY+ +M
Sbjct:   48 EASGGKKR-KRLQKKAPGAPKRGKSPYILFSMEKREEIKATMPENSKVTDVMRAIADAWGKMGDDDKQPWKVAAEADKQRYEEEMAAYDGPLRVPNKR--AKKHPDAPKRASSAFLFYSQVMRPRIKAEHQDMKNTEISKQLGEAWGKATDEQKAPFVEKEKVDRARYKREM 216          
BLAST of jgi.p|Trimin1|348282 vs. uniprot
Match: A0A397DXE2_9STRA (Uncharacterized protein n=6 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397DXE2_9STRA)

HSP 1 Score: 114 bits (285), Expect = 1.330e-24
Identity = 63/177 (35.59%), Postives = 102/177 (57.63%), Query Frame = 0
Query:   24 GDGMGEAEGKKRRRKRDTRKHPAAPVQCRSAYVLFSIHRRQELKE-QRPDVKTRDLMGIIAQEWRALERGARERWQARAXXXXXXXXXEKAAYAGPLRVPSRRRWVSAHPDAPKKASNAYLEFCRARRPALQAHYPHVASAALSKMLAEAWARLSAEERAPFVACALVDKARYRSDM 199
            GD   E     ++++R  +K P AP + +S Y+LFS+ +R+E+K    P+ K  D+M  IA  W  +    +  W+  A         E A Y GPLRVP++R     HP+APK+AS+A+L + +  RP +++ +  + +  +SK L EAW + +  ++APFV   LVD+ARY+ +M
Sbjct:   13 GDIRAEIPTVTKKKRRLQKKAPGAPKRGKSPYILFSMDKREEIKSTMAPNAKVTDVMRAIADAWSKMSEDEKAPWKTAAESDKQRYEEEMATYDGPLRVPNKR--AKKHPNAPKRASSAFLFYSQVMRPRIKSEHQEMKNTEISKQLGEAWGKATKAQKAPFVEKELVDRARYKREM 187          
BLAST of jgi.p|Trimin1|348282 vs. uniprot
Match: A0A8K1CAL6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CAL6_PYTOL)

HSP 1 Score: 109 bits (273), Expect = 2.460e-24
Identity = 63/170 (37.06%), Postives = 99/170 (58.24%), Query Frame = 0
Query:   31 EGKKRRRKRDTRKHPAAPVQCRSAYVLFSIHRRQELKEQR-PDVKTRDLMGIIAQEWRALERGARERWQARAXXXXXXXXXEKAAYAGPLRVPSRRRWVSAHPDAPKKASNAYLEFCRARRPALQAHYPHVASAALSKMLAEAWARLSAEERAPFVACALVDKARYRSDM 199
            EGKKR  KR  +K P AP + +S Y+LFS+ +R+ +K     D K  D+M  IA  W  +    ++ W+  A         E A+Y GPLRVP++R     HP+APK+AS+A+L + +  RP ++A +P + +  +SK L EAW + +  ++APF+     D+ RY+ +M
Sbjct:   21 EGKKR--KRLQKKAPGAPKRGKSPYILFSMDKREAIKATLGADAKVTDIMRAIANAWAKMSDDDKQPWKLAAEQDKQRYEEEMASYDGPLRVPNKR--AKKHPEAPKRASSAFLFYSQVMRPRIKADHPDMKNTEISKQLGEAWGKATEAQKAPFIEKEKEDRDRYKREM 186          
BLAST of jgi.p|Trimin1|348282 vs. uniprot
Match: A0A1V9ZRB9_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZRB9_9STRA)

HSP 1 Score: 114 bits (284), Expect = 2.970e-24
Identity = 63/173 (36.42%), Postives = 102/173 (58.96%), Query Frame = 0
Query:   28 GEAEGKKRRRKRDTRKHPAAPVQCRSAYVLFSIHRRQELKEQRP-DVKTRDLMGIIAQEWRALERGARERWQARAXXXXXXXXXEKAAYAGPLRVPSRRRWVSAHPDAPKKASNAYLEFCRARRPALQAHYPHVASAALSKMLAEAWARLSAEERAPFVACALVDKARYRSDM 199
            GE     ++++R  +K P AP + +S Y+LFS+ +R+E+K   P + K  D+M  IA+ W  +    +  W+  A         E A Y GPLRVP++R     HP+APK+AS+A+L + +  RP ++A +P + +  +SK L EAWA+ +  ++APFV     D+ARY+ +M
Sbjct:   12 GEIPTVNKKKRRLQKKAPGAPKRGKSPYILFSMDKREEIKATMPPNSKVTDVMRAIAEAWSKMSEDEKAPWKLSAESDKQRYEEEMATYDGPLRVPNKR--AKKHPNAPKRASSAFLFYSQVMRPRIKAEHPDMKNTEISKQLGEAWAKATKAQKAPFVEKEKEDRARYKREM 182          
BLAST of jgi.p|Trimin1|348282 vs. uniprot
Match: A0A067C9M6_SAPPC (Uncharacterized protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067C9M6_SAPPC)

HSP 1 Score: 109 bits (272), Expect = 3.490e-24
Identity = 60/166 (36.14%), Postives = 98/166 (59.04%), Query Frame = 0
Query:   35 RRRKRDTRKHPAAPVQCRSAYVLFSIHRRQELKEQRP-DVKTRDLMGIIAQEWRALERGARERWQARAXXXXXXXXXEKAAYAGPLRVPSRRRWVSAHPDAPKKASNAYLEFCRARRPALQAHYPHVASAALSKMLAEAWARLSAEERAPFVACALVDKARYRSDM 199
            ++++R  +K P AP + +S Y+LFS+ +R+E+K   P + K  D+M  IA  W  +    +  W+  A         E A Y GPLRVP++R     HP+APK+AS+A+L + +  RP ++A +  + +  +SK L EAWA+ +  ++APFV     D+ARY+ +M
Sbjct:   20 KKKRRLQKKAPGAPKRGKSPYILFSMDKREEIKATMPPNSKVTDVMRAIADAWSKMSEEEKAPWKLSAESDKQRYEEEMATYDGPLRVPNKR--AKKHPNAPKRASSAFLFYSQVMRPRIKAEHADMKNTEISKQLGEAWAKATKAQKAPFVEKEKEDRARYKREM 183          
BLAST of jgi.p|Trimin1|348282 vs. uniprot
Match: A0A024U6C4_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces TaxID=100860 RepID=A0A024U6C4_9STRA)

HSP 1 Score: 108 bits (271), Expect = 5.060e-24
Identity = 58/166 (34.94%), Postives = 97/166 (58.43%), Query Frame = 0
Query:   35 RRRKRDTRKHPAAPVQCRSAYVLFSIHRRQELKE-QRPDVKTRDLMGIIAQEWRALERGARERWQARAXXXXXXXXXEKAAYAGPLRVPSRRRWVSAHPDAPKKASNAYLEFCRARRPALQAHYPHVASAALSKMLAEAWARLSAEERAPFVACALVDKARYRSDM 199
            ++++R  +K P AP + +S Y+LFS+ +R+E+K    P+ K  D+M  IA  W  +    +  W+  A         E A Y GPLRVP++R     HP+APK+AS+A+L + +  RP +++ +  + +  +SK L EAW + +  ++APFV     D+ARY+ +M
Sbjct:   24 KKKRRLQKKAPGAPKRGKSPYILFSMDKREEIKATMAPNAKVTDVMRAIADAWSKMSEDEKAPWKTAAESDKQRYEEEMATYDGPLRVPNKR--AKKHPNAPKRASSAFLFYSQVMRPRIKSEHQEMKNTEISKQLGEAWGKATKAQKAPFVEKEKEDRARYKREM 187          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348282 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CIY8_9STRA1.150e-196100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A3R7KJP5_9STRA1.550e-2740.00Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A5D6YAG9_9STRA1.790e-2740.00Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
K3WVY6_GLOUD1.840e-2738.82Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
M4BDC0_HYAAE2.860e-2740.12Uncharacterized protein n=22 Tax=Peronosporaceae T... [more]
A0A397DXE2_9STRA1.330e-2435.59Uncharacterized protein n=6 Tax=Aphanomyces astaci... [more]
A0A8K1CAL6_PYTOL2.460e-2437.06Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A1V9ZRB9_9STRA2.970e-2436.42Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A067C9M6_SAPPC3.490e-2436.14Uncharacterized protein n=3 Tax=Saprolegniaceae Ta... [more]
A0A024U6C4_9STRA5.060e-2434.94Uncharacterized protein n=4 Tax=Aphanomyces TaxID=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00886HIGHMOBLTY12coord: 150..168
score: 21.05
coord: 100..120
score: 37.57
coord: 168..187
score: 26.11
coord: 187..207
score: 30.86
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 378..399
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 12..35
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..46
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 382..399
NoneNo IPR availablePANTHERPTHR46040:SF3HIGH MOBILITY GROUP PROTEIN 2coord: 17..115
coord: 125..204
NoneNo IPR availablePANTHERPTHR46040HIGH MOBILITY GROUP PROTEIN 2coord: 17..115
coord: 125..204
NoneNo IPR availableCDDcd01390HMGB-UBF_HMG-boxcoord: 52..89
e-value: 5.9652E-8
score: 47.2374
NoneNo IPR availableCDDcd01390HMGB-UBF_HMG-boxcoord: 135..199
e-value: 8.42964E-15
score: 66.8825
IPR009071High mobility group box domainSMARTSM00398hmgende2coord: 47..117
e-value: 7.5E-15
score: 65.3
coord: 134..204
e-value: 1.5E-13
score: 61.0
IPR009071High mobility group box domainPFAMPF00505HMG_boxcoord: 135..202
e-value: 8.0E-15
score: 55.0
coord: 52..115
e-value: 2.2E-14
score: 53.6
IPR009071High mobility group box domainPROSITEPS50118HMG_BOX_2coord: 135..203
score: 14.740975
IPR009071High mobility group box domainPROSITEPS50118HMG_BOX_2coord: 48..116
score: 13.756111
IPR036910High mobility group box domain superfamilyGENE3D1.10.30.10High mobility group box domaincoord: 124..205
e-value: 3.8E-17
score: 64.4
IPR036910High mobility group box domain superfamilyGENE3D1.10.30.10High mobility group box domaincoord: 30..121
e-value: 3.4E-18
score: 67.8
IPR036910High mobility group box domain superfamilySUPERFAMILY47095HMG-boxcoord: 120..202
IPR036910High mobility group box domain superfamilySUPERFAMILY47095HMG-boxcoord: 42..119

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_22contigContig_22:343643..347981 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348282mRNA_6356Tribonema minus UTEX_B_3156 mRNAContig_22 343643..347984 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|348282|estExt_Genemark1.C_Ctg_220044 ID=Trimin1|348282|estExt_Genemark1.C_Ctg_220044|Name=jgi.p|Trimin1|348282|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=400bp
MVQTFERPDMLSYWAAEDDKQPDGDGMGEAEGKKRRRKRDTRKHPAAPVQ
CRSAYVLFSIHRRQELKEQRPDVKTRDLMGIIAQEWRALERGARERWQAR
AAADRARYQAEKAAYAGPLRVPSRRRWVSAHPDAPKKASNAYLEFCRARR
PALQAHYPHVASAALSKMLAEAWARLSAEERAPFVACALVDKARYRSDMA
AFTAAAAAAAAAPSPGALQQFSDAEGAAGGGGGGGSCGGGGDGGGCVNSS
GSGGDGGGGGSGGANTGGVGVRGIGGWCSSGSGGGCCSGGGDGGGSIGGF
GSSGGAGSGGDCEFGHRANDMVNERLGATSASAAEQGYDLLMSPGCDSLQ
DGFDSLKAGGCNSADDGAGMHDGFAGDGDWLAAGDGDDDELQLCGLQDP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009071HMG_box_dom
IPR036910HMG_box_dom_sf