Trimin1|348257|estExt_Genemark1.C_Ctg_210113 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|348257
Unique NameTrimin1|348257|estExt_Genemark1.C_Ctg_210113
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length416
Homology
BLAST of jgi.p|Trimin1|348257 vs. uniprot
Match: A0A836CH45_9STRA (YL1_C domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH45_9STRA)

HSP 1 Score: 561 bits (1445), Expect = 1.620e-197
Identity = 415/415 (100.00%), Postives = 415/415 (100.00%), Query Frame = 0
Query:    1 MAALKRKQRELEEATAAQSAELIGEDADADQEFWGQDAWKEDESEYSTEAEEQDVFDSDFNESEESGXXXXXXXXXXXXXXXXXVEVYSEVRGQGSQNKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGEDVGAGDVTAMDDLGGYAPERSMRTTTKTKTEVSAKVREQGLRQAQRKGAEQQPQAAARAFRLTQEQMLLEAASETEHANTNWVAXXXXXXXXXXXXXXXXXXXXXXXXXXXEEAQQRXXXXEAQDLETQPRQHMPFISRFYSKRGAPCTVTFPAVDLVPSVLKGPHPAPITPQQRAQRTLCKVTGRPAKYRDSLTGYPFADAAAFRELRRRYGAAPTPTPAESSLAAPYLAAAEHTPLRAAALPAKPSTKGKGRPXXXXXXXXXXXXXXXXXXKAAHSCLIAR 415
            MAALKRKQRELEEATAAQSAELIGEDADADQEFWGQDAWKEDESEYSTEAEEQDVFDSDFNESEESGXXXXXXXXXXXXXXXXXVEVYSEVRGQGSQNKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGEDVGAGDVTAMDDLGGYAPERSMRTTTKTKTEVSAKVREQGLRQAQRKGAEQQPQAAARAFRLTQEQMLLEAASETEHANTNWVAXXXXXXXXXXXXXXXXXXXXXXXXXXXEEAQQRXXXXEAQDLETQPRQHMPFISRFYSKRGAPCTVTFPAVDLVPSVLKGPHPAPITPQQRAQRTLCKVTGRPAKYRDSLTGYPFADAAAFRELRRRYGAAPTPTPAESSLAAPYLAAAEHTPLRAAALPAKPSTKGKGRPXXXXXXXXXXXXXXXXXXKAAHSCLIAR
Sbjct:    1 MAALKRKQRELEEATAAQSAELIGEDADADQEFWGQDAWKEDESEYSTEAEEQDVFDSDFNESEESGXXXXXXXXXXXXXXXXXVEVYSEVRGQGSQNKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGEDVGAGDVTAMDDLGGYAPERSMRTTTKTKTEVSAKVREQGLRQAQRKGAEQQPQAAARAFRLTQEQMLLEAASETEHANTNWVAXXXXXXXXXXXXXXXXXXXXXXXXXXXEEAQQRXXXXEAQDLETQPRQHMPFISRFYSKRGAPCTVTFPAVDLVPSVLKGPHPAPITPQQRAQRTLCKVTGRPAKYRDSLTGYPFADAAAFRELRRRYGAAPTPTPAESSLAAPYLAAAEHTPLRAAALPAKPSTKGKGRPXXXXXXXXXXXXXXXXXXKAAHSCLIAR 415          
BLAST of jgi.p|Trimin1|348257 vs. uniprot
Match: D7FIM9_ECTSI (YL1_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIM9_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 1.650e-20
Identity = 137/377 (36.34%), Postives = 185/377 (49.07%), Query Frame = 0
Query:    5 KRKQRELEEATAAQSAELI-------------GEDADADQEFWGQDAWKEDE---SEYSTEAEEQDVFDSDFNESEESGXXXXXXXXXXXXXXXXXVE------VYSEVRGQGSQNKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGEDVGAGDVTAMDDLGGYAPERSMRTTTKTKTEVSAKVRE--QGLRQAQRKGAEQQPQAAARAFRLTQEQMLLEAASETEHANTNWVAXXXXXXXXXXXXXXXXXXXXXXXXXXXEEAQQRXXXXEAQDLETQPRQHMPFISRFYSKRGAPCTVTFPAVDLVPSVL-KGPHPA---PITPQQRAQRTL-------CKVTGRPAKYRDSLTGYPFADAAAFRELRRRYGA 346
            +RK + LEEA AA S +L+             G+DA+AD+ FWGQ AW+E+E   SE+S+E +E D FD DFN+SE   XXXXXXXX          +      VY E +    + +       XXXXXXXXXXXXXX                          G   +R++R +TK KTE S +VRE     R+AQ K +  Q + A +  + TQ+Q+LLEA  +TE  N  W+                               +QR    EA++ E +P+QH    SR+ S+RG   T+ FP    +P VL + P  A       Q +  +T        CK+TG PA YRD LTGY +A+ AAFRE+R+RYGA
Sbjct:    8 RRKAKALEEAGAALSVKLVARSTRGQRISELQGDDAEADETFWGQGAWQEEEDGDSEFSSEEDEPDKFDKDFNDSESEXXXXXXXXXNRLRKNERAAKRKQPGGVYKEPKTFAVKKRKTAPAGGXXXXXXXXXXXXXXAAP-----------------------GALSKRTVRASTKNKTEKSLEVREGEAKAREAQLKRSTPQRKKAIKG-QFTQKQLLLEAI-QTEQENMRWIL------------------------------KQRRLEDEAKEDEGRPKQHKILASRYASRRGCVDTIFFPDAYYLPPVLCQAPFSAGGGDGADQDKGSKTAKSSSDRRCKITGAPAPYRDPLTGYYYANGAAFREVRKRYGA 329          
BLAST of jgi.p|Trimin1|348257 vs. uniprot
Match: B7FUQ2_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FUQ2_PHATC)

HSP 1 Score: 75.9 bits (185), Expect = 4.100e-11
Identity = 54/154 (35.06%), Postives = 75/154 (48.70%), Query Frame = 0
Query:  194 LTQEQMLLEAASETEHANTNWVAXXXXXXXXXXXXXXXXXXXXXXXXXXXEEAQQRXXXXEAQDLETQPRQHMP---FISRFYSKRGAPCTVTFPAVDLVPSVLKGPHPAPITPQQRAQRTLCKVTGRPAKYRDSLTGYPFADAAAFRELRRRY 344
             TQE++LLEAA ETE  N  W+                              ++QR    + +D     R H      I  + S+RGAP T+TFP +D VP +L     A +  ++    T C VTG  AKY+D LTG  +++AAAF+ELRRR+
Sbjct:  221 FTQEELLLEAALETEPENHRWLL-----------------------------SRQRIQDQQDRDAGPNDRSHRRGGRVIESYVSRRGAPNTITFPEMDYVPEILTQSSSAML--ERLRIPTFCVVTGERAKYKDPLTGLEYSNAAAFKELRRRH 343          
BLAST of jgi.p|Trimin1|348257 vs. uniprot
Match: A0A7S0GLE3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GLE3_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 4.260e-8
Identity = 34/94 (36.17%), Postives = 53/94 (56.38%), Query Frame = 0
Query:  269 ISRFYSKRGAPCTVTFPAVDLVPSVLKGPHPAPITPQQRAQRT------------------LCKVTGRPAKYRDSLTGYPFADAAAFRELRRRY 344
            I RF+S+RG   T+TFP +DL+P  ++         Q++ Q+                   +C +TG  AKYRD  TG+P+++AAAFRE+R+R+
Sbjct:   37 IMRFHSRRGCYNTLTFPEMDLIPDYIQRHMTIAKKKQEKQQKNNKKIQDSNVVHKPSARAVVCFITGEKAKYRDPKTGHPYSNAAAFREIRKRF 130          
BLAST of jgi.p|Trimin1|348257 vs. uniprot
Match: A0A7S3YB55_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YB55_HETAK)

HSP 1 Score: 58.5 bits (140), Expect = 4.600e-7
Identity = 30/46 (65.22%), Postives = 39/46 (84.78%), Query Frame = 0
Query:   22 LIGEDADADQEFWGQDAWK-EDESEYSTEAEEQDVFDSDFNESEES 66
            +IGE+A+ADQEFWGQDAW  ED+ +YSTE E+ D+FD DFN++E S
Sbjct:   45 MIGEEAEADQEFWGQDAWNDEDDHDYSTEEEKPDLFDKDFNDTESS 90          
BLAST of jgi.p|Trimin1|348257 vs. uniprot
Match: I0YUX1_COCSC (YL1-domain-containing protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YUX1_COCSC)

HSP 1 Score: 57.0 bits (136), Expect = 3.980e-5
Identity = 29/47 (61.70%), Postives = 32/47 (68.09%), Query Frame = 0
Query:  297 PHPAPITPQQRAQRTLCKVTGRPAKYRDSLTGYPFADAAAFRELRRR 343
            P  AP  P     + LC +TGRPAKYRD  TG P+ADA AFRELRRR
Sbjct:  283 PQKAPAPPA----KPLCVITGRPAKYRDPETGMPYADAEAFRELRRR 325          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348257 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A836CH45_9STRA1.620e-197100.00YL1_C domain-containing protein n=1 Tax=Tribonema ... [more]
D7FIM9_ECTSI1.650e-2036.34YL1_C domain-containing protein n=2 Tax=Ectocarpus... [more]
B7FUQ2_PHATC4.100e-1135.06Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A7S0GLE3_9STRA4.260e-836.17Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
A0A7S3YB55_HETAK4.600e-765.22Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
I0YUX1_COCSC3.980e-561.70YL1-domain-containing protein n=1 Tax=Coccomyxa su... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 241..261
NoneNo IPR availableCOILSCoilCoilcoord: 1..21
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 384..402
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 102..119
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 200..219
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 44..84
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 370..415
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 156..176
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 243..260
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..260
IPR013272Vps72/YL1, C-terminalSMARTSM00993YL1_C_2coord: 311..340
e-value: 1.5E-6
score: 37.8
IPR013272Vps72/YL1, C-terminalPFAMPF08265YL1_Ccoord: 312..339
e-value: 2.7E-10
score: 39.8
IPR008895Vps72/YL1 familyPFAMPF05764YL1coord: 25..226
e-value: 6.4E-11
score: 42.8
IPR008895Vps72/YL1 familyPANTHERPTHR13275YL-1 PROTEIN TRANSCRIPTION FACTOR-LIKE 1coord: 18..346

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_21contigContig_21:1140247..1149456 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348257mRNA_7224Tribonema minus UTEX_B_3156 mRNAContig_21 1140247..1149456 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|348257|estExt_Genemark1.C_Ctg_210113 ID=Trimin1|348257|estExt_Genemark1.C_Ctg_210113|Name=jgi.p|Trimin1|348257|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=416bp
MAALKRKQRELEEATAAQSAELIGEDADADQEFWGQDAWKEDESEYSTEA
EEQDVFDSDFNESEESGGEDEEQSEESGGEDEEQVEVYSEVRGQGSQNKG
SGGEDDEQEPKKPKAPPKKKAVEAAALGEGGEDVGAGDVTAMDDLGGYAP
ERSMRTTTKTKTEVSAKVREQGLRQAQRKGAEQQPQAAARAFRLTQEQML
LEAASETEHANTNWVAQQRRLAEEAQDGEHASTNGVAQQRRPAEEAQQRR
LAEEAQDLETQPRQHMPFISRFYSKRGAPCTVTFPAVDLVPSVLKGPHPA
PITPQQRAQRTLCKVTGRPAKYRDSLTGYPFADAAAFRELRRRYGAAPTP
TPAESSLAAPYLAAAEHTPLRAAALPAKPSTKGKGRPKGARGGKRGGKGG
RGGGRKAAHSCLIAR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013272Vps72/YL1_C
IPR008895Vps72/YL1