Trimin1|348182|estExt_Genemark1.C_Ctg_200138 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|348182
Unique Name	Trimin1\|348182\|estExt_Genemark1.C_Ctg_200138
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	1358

Homology

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BLAST of jgi.p|Trimin1|348182 vs. uniprot
Match: A0A836CGY6_9STRA (PDZ domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGY6_9STRA)

HSP 1 Score: 1560 bits (4039), Expect = 0.000e+0
Identity = 1286/1286 (100.00%), Postives = 1286/1286 (100.00%), Query Frame = 0

Query:    1 MDEDSSERKRRRATEGVNYADPDTAESDSDEAIENTSRSSRRKKLAHEVNRQPAVKLALTMLESGGKLSPADHVLAQLRITGDRHAYSATQLVNCLLEEAHMLCFEENSACVHVVVPRKPRLQMAAVQDIEAQAKAINIAVTVSFVHSQGKSDSLDALFSHAQEVAKAVLKLRLSKAYWYQAGQHLHHELWHGRASQRTFDGVRLDLRLATTDPAALASGTWDVWLQVVPAVHRFLPADTTRVLELKDQLQLEEVRGGGARDTGIADGDDAAAPRLLLDGCGLGEEEVAELLQVKVLPRLTAALIRDVSRHDFEMTPLDRASRARGYLTGPRDADDTRAFWRQTHLLDLPPNFHFVKVVIDGQCLTYPGCAVMQDVCEVPAASHAKHTVILRSFVDTLDSMPRVKVLVVPPMNPVPATAAAAALPCATPGGLLFRTGKGAIVGVDETPPTALARAHAERMARRQLVAAAAFTTPPATLPSAAHATPSRGAQRAATDDQACHGDDELEPMSPAXXXXXXXXXXXXXXXXXXXXXXXXXXKRIVLQPGRRLGVPAPPAVARANSRGQQQLVRRLPMRKLDGGAEPPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEHTAALTAVRVQAGAGDGSGGAAEEGFHVGGLVSPENRRKMFVSVRGDAKLDMGEKVAARHGGRWRYAVVVDPRNGMRDYVKLHVADDADGDPVEIEVERAELEDSVLRAKPEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDSEWSPDVIGDAKAESADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCDVSEMELLEVTWGEEAATLNMALQPDELGSLAVGGAAPGTPGEHVPVGSRVAVVNGVAVKQMSMENIVKLLKARPLTVGFAIGKRKAEGGGAGAAXXXXXXXXXXXAGGDXXXXXXXXXXXXXXXAKPGAGKAXXXXXXXXXXXXXXXPRSSAIKLTKVAPAPASTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAARAAIHGACATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPAAVPFKQPKTTKKTXXXXXXAAXXXXKAAADTSPADPAVLPAAAEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAKPRKAVKKPKXXXXXXXXXXXXXPPTDPAVXXXXXXXXXXXXXXXRPPK 1286
            MDEDSSERKRRRATEGVNYADPDTAESDSDEAIENTSRSSRRKKLAHEVNRQPAVKLALTMLESGGKLSPADHVLAQLRITGDRHAYSATQLVNCLLEEAHMLCFEENSACVHVVVPRKPRLQMAAVQDIEAQAKAINIAVTVSFVHSQGKSDSLDALFSHAQEVAKAVLKLRLSKAYWYQAGQHLHHELWHGRASQRTFDGVRLDLRLATTDPAALASGTWDVWLQVVPAVHRFLPADTTRVLELKDQLQLEEVRGGGARDTGIADGDDAAAPRLLLDGCGLGEEEVAELLQVKVLPRLTAALIRDVSRHDFEMTPLDRASRARGYLTGPRDADDTRAFWRQTHLLDLPPNFHFVKVVIDGQCLTYPGCAVMQDVCEVPAASHAKHTVILRSFVDTLDSMPRVKVLVVPPMNPVPATAAAAALPCATPGGLLFRTGKGAIVGVDETPPTALARAHAERMARRQLVAAAAFTTPPATLPSAAHATPSRGAQRAATDDQACHGDDELEPMSPAXXXXXXXXXXXXXXXXXXXXXXXXXXKRIVLQPGRRLGVPAPPAVARANSRGQQQLVRRLPMRKLDGGAEPPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEHTAALTAVRVQAGAGDGSGGAAEEGFHVGGLVSPENRRKMFVSVRGDAKLDMGEKVAARHGGRWRYAVVVDPRNGMRDYVKLHVADDADGDPVEIEVERAELEDSVLRAKPEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDSEWSPDVIGDAKAESADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCDVSEMELLEVTWGEEAATLNMALQPDELGSLAVGGAAPGTPGEHVPVGSRVAVVNGVAVKQMSMENIVKLLKARPLTVGFAIGKRKAEGGGAGAAXXXXXXXXXXXAGGDXXXXXXXXXXXXXXXAKPGAGKAXXXXXXXXXXXXXXXPRSSAIKLTKVAPAPASTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAARAAIHGACATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPAAVPFKQPKTTKKTXXXXXXAAXXXXKAAADTSPADPAVLPAAAEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAKPRKAVKKPKXXXXXXXXXXXXXPPTDPAVXXXXXXXXXXXXXXXRPPK
Sbjct:    1 MDEDSSERKRRRATEGVNYADPDTAESDSDEAIENTSRSSRRKKLAHEVNRQPAVKLALTMLESGGKLSPADHVLAQLRITGDRHAYSATQLVNCLLEEAHMLCFEENSACVHVVVPRKPRLQMAAVQDIEAQAKAINIAVTVSFVHSQGKSDSLDALFSHAQEVAKAVLKLRLSKAYWYQAGQHLHHELWHGRASQRTFDGVRLDLRLATTDPAALASGTWDVWLQVVPAVHRFLPADTTRVLELKDQLQLEEVRGGGARDTGIADGDDAAAPRLLLDGCGLGEEEVAELLQVKVLPRLTAALIRDVSRHDFEMTPLDRASRARGYLTGPRDADDTRAFWRQTHLLDLPPNFHFVKVVIDGQCLTYPGCAVMQDVCEVPAASHAKHTVILRSFVDTLDSMPRVKVLVVPPMNPVPATAAAAALPCATPGGLLFRTGKGAIVGVDETPPTALARAHAERMARRQLVAAAAFTTPPATLPSAAHATPSRGAQRAATDDQACHGDDELEPMSPAXXXXXXXXXXXXXXXXXXXXXXXXXXKRIVLQPGRRLGVPAPPAVARANSRGQQQLVRRLPMRKLDGGAEPPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEHTAALTAVRVQAGAGDGSGGAAEEGFHVGGLVSPENRRKMFVSVRGDAKLDMGEKVAARHGGRWRYAVVVDPRNGMRDYVKLHVADDADGDPVEIEVERAELEDSVLRAKPEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDSEWSPDVIGDAKAESADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCDVSEMELLEVTWGEEAATLNMALQPDELGSLAVGGAAPGTPGEHVPVGSRVAVVNGVAVKQMSMENIVKLLKARPLTVGFAIGKRKAEGGGAGAAXXXXXXXXXXXAGGDXXXXXXXXXXXXXXXAKPGAGKAXXXXXXXXXXXXXXXPRSSAIKLTKVAPAPASTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAARAAIHGACATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPAAVPFKQPKTTKKTXXXXXXAAXXXXKAAADTSPADPAVLPAAAEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAKPRKAVKKPKXXXXXXXXXXXXXPPTDPAVXXXXXXXXXXXXXXXRPPK 1286

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|348182 vs. uniprot

BLAST of jgi.p|Trimin1|348182 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A836CGY6_9STRA	0.000e+0	100.00	PDZ domain-containing protein n=1 Tax=Tribonema mi...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 970..1013
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 769..850
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 720..743
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..17
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..49
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1254..1357
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 720..735
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..49
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1154..1180
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 476..512
IPR001478	PDZ domain	PROSITE	PS50106	PDZ	coord: 857..939 score: 8.6469

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_20	contig	Contig_20:1026472..1034040 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|348182	mRNA_4174	Tribonema minus UTEX_B_3156	mRNA	Contig_20 1026472..1034040 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|348182|estExt_Genemark1.C_Ctg_200138 ID=Trimin1|348182|estExt_Genemark1.C_Ctg_200138|Name=jgi.p|Trimin1|348182|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=1358bp
MDEDSSERKRRRATEGVNYADPDTAESDSDEAIENTSRSSRRKKLAHEVN
RQPAVKLALTMLESGGKLSPADHVLAQLRITGDRHAYSATQLVNCLLEEA
HMLCFEENSACVHVVVPRKPRLQMAAVQDIEAQAKAINIAVTVSFVHSQG
KSDSLDALFSHAQEVAKAVLKLRLSKAYWYQAGQHLHHELWHGRASQRTF
DGVRLDLRLATTDPAALASGTWDVWLQVVPAVHRFLPADTTRVLELKDQL
QLEEVRGGGARDTGIADGDDAAAPRLLLDGCGLGEEEVAELLQVKVLPRL
TAALIRDVSRHDFEMTPLDRASRARGYLTGPRDADDTRAFWRQTHLLDLP
PNFHFVKVVIDGQCLTYPGCAVMQDVCEVPAASHAKHTVILRSFVDTLDS
MPRVKVLVVPPMNPVPATAAAAALPCATPGGLLFRTGKGAIVGVDETPPT
ALARAHAERMARRQLVAAAAFTTPPATLPSAAHATPSRGAQRAATDDQAC
HGDDELEPMSPAAAAAAAAAAAEAAATPAAAEAPPVVKKRIVLQPGRRLG
VPAPPAVARANSRGQQQLVRRLPMRKLDGGAEPPAPAAAAAAAAAQQVSA
EAGAAAAQAAAAAAREHTAALTAVRVQAGAGDGSGGAAEEGFHVGGLVSP
ENRRKMFVSVRGDAKLDMGEKVAARHGGRWRYAVVVDPRNGMRDYVKLHV
ADDADGDPVEIEVERAELEDSVLRAKPEPPKPKATKKKAAAAKPKPAAAA
AAASSAAAAKPTAAAAAAAAGSDSEWSPDVIGDAKAESADDDDDDFVADD
ASEKDGKSAAAPANKKRARKPAAAQSGNKAARTDREAGGPGSAATAAAGG
GGCDVSEMELLEVTWGEEAATLNMALQPDELGSLAVGGAAPGTPGEHVPV
GSRVAVVNGVAVKQMSMENIVKLLKARPLTVGFAIGKRKAEGGGAGAAAA
GDGAGAAAAAGGDAAAAPAGAAAKKPRPAKPGAGKATKAAGGKGAKQAAG
KPRSSAIKLTKVAPAPASTTTTTSATPAAGAAAAAAVPPAAVEATVDAAS
SSSTCAAADAARAAIHGACATAAAATSTGTPTAAPAPSSAEASQPKAAAD
GNAAAASGAASAAAAAAASAAAAAAPTSDARAAAAAAPAAASVSVSPAAV
PFKQPKTTKKTTKKTKPAASKTAKAAADTSPADPAVLPAAAEGGAAAAAS
AAASGGAGSGGTAIPPAAAAAATAPAAAAAAAAAAPAKPRKAVKKPKTAS
AAAAGAAPAAPPTDPAVAPSGAAAAPAKKRGGRPPKTAKPAAAAAAAADA
AAASPDAAPVDTAAAAAAAPAKKRRPAKAAKPKPAAPDAAAAAAAAPAAD
APAAAPV*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001478	PDZ