Trimin1|348172|estExt_Genemark1.C_Ctg_200125 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|348172
Unique NameTrimin1|348172|estExt_Genemark1.C_Ctg_200125
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length615
Homology
BLAST of jgi.p|Trimin1|348172 vs. uniprot
Match: A0A836CHI1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHI1_9STRA)

HSP 1 Score: 727 bits (1877), Expect = 8.970e-257
Identity = 614/614 (100.00%), Postives = 614/614 (100.00%), Query Frame = 0
Query:    1 MERSFSASRDDTAFAPRGTRQPPIKNNGCSPLKKSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVMELTPPSYSQRSDAXXXXXXXXXXXXXXAYGGEESQCSLTARYDGLALASQQSVGSQYGDQXXXXXXXXXXXXXXXXSDYGGAAFAAVSRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEPAPKRKRARLTPEEREARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLERAVATGRHVAQEVACVLDAGWLDAMAEPDRAALTEAAARQGDDKEAFKVLQARGAVRGAIWWTRRGLLDGGAAAEGDGVSIMQELRVVAVDPAEFADALAVPGAPPDTYPGVGALVDAVAARLCGXXXXXXXXXXXXXXXGVARELHXXXXXXXXXXXXXXXXXXXXXXACPGEDALQDCLAWLMVARGVEARVTRTPAETGQYLWDLTRALAHGPYRAALTDLHCVSRAKVTVAGGALCGADNAGGGATAADVWLRQLMQVPGVSEPKARNIVRAYPSARRLVHAFTDPAQPQPAALLAHVMSERRELVLSERVYRFFTTRDPDMVVM 614
            MERSFSASRDDTAFAPRGTRQPPIKNNGCSPLKKSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVMELTPPSYSQRSDAXXXXXXXXXXXXXXAYGGEESQCSLTARYDGLALASQQSVGSQYGDQXXXXXXXXXXXXXXXXSDYGGAAFAAVSRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEPAPKRKRARLTPEEREARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLERAVATGRHVAQEVACVLDAGWLDAMAEPDRAALTEAAARQGDDKEAFKVLQARGAVRGAIWWTRRGLLDGGAAAEGDGVSIMQELRVVAVDPAEFADALAVPGAPPDTYPGVGALVDAVAARLCGXXXXXXXXXXXXXXXGVARELHXXXXXXXXXXXXXXXXXXXXXXACPGEDALQDCLAWLMVARGVEARVTRTPAETGQYLWDLTRALAHGPYRAALTDLHCVSRAKVTVAGGALCGADNAGGGATAADVWLRQLMQVPGVSEPKARNIVRAYPSARRLVHAFTDPAQPQPAALLAHVMSERRELVLSERVYRFFTTRDPDMVVM
Sbjct:    1 MERSFSASRDDTAFAPRGTRQPPIKNNGCSPLKKSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVMELTPPSYSQRSDAXXXXXXXXXXXXXXAYGGEESQCSLTARYDGLALASQQSVGSQYGDQXXXXXXXXXXXXXXXXSDYGGAAFAAVSRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEPAPKRKRARLTPEEREARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLERAVATGRHVAQEVACVLDAGWLDAMAEPDRAALTEAAARQGDDKEAFKVLQARGAVRGAIWWTRRGLLDGGAAAEGDGVSIMQELRVVAVDPAEFADALAVPGAPPDTYPGVGALVDAVAARLCGXXXXXXXXXXXXXXXGVARELHXXXXXXXXXXXXXXXXXXXXXXACPGEDALQDCLAWLMVARGVEARVTRTPAETGQYLWDLTRALAHGPYRAALTDLHCVSRAKVTVAGGALCGADNAGGGATAADVWLRQLMQVPGVSEPKARNIVRAYPSARRLVHAFTDPAQPQPAALLAHVMSERRELVLSERVYRFFTTRDPDMVVM 614          
BLAST of jgi.p|Trimin1|348172 vs. uniprot
Match: D7FI47_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI47_ECTSI)

HSP 1 Score: 141 bits (355), Expect = 1.750e-31
Identity = 112/342 (32.75%), Postives = 150/342 (43.86%), Query Frame = 0
Query:  289 ATGRHVAQEVACVLDAGWLDAMAEPDRAALTEAAARQGDDKEAFKVLQARGAVRGAIWWTRRGLLDGGAAAEGDGVSIMQELRVVAVDPAEFADALAVPGA------------PPDTYPGVGALVDAVAARLCGXXXXXXXXXXXXXXXGVARELHXXXXXXXXXXXXXXXXXXXXXXACPGEDALQDCLAWLMVARGVEARVTRTPAETGQYLWDLTRALAHGPYRAALTDLHCVSRAKVTVAGGALCGADNAGGGATAADVWLRQLMQVPGVSEPKARNIVRAYPSARRLVHAFTDPAQPQP--AALLAHVM---SERRELVLSERVYRFFTTRDPDMVV 613
            A G    +EVACV++  + D+      A     AA Q   KE F V        GA+WWTRR  LDGGAA  G GV  + ++ VV V P    D L  PGA              D + G+G  VD + +   G                 A+                          C  +D  +D   WL++ + VE R+T+   ETGQYLWDLT++L+  PY+  +T+LHCV+R+K    G                D W+R L QV  VS  KA  I   YP  R LV A +DP+ P+   A LL   M   SE+R+   + RV+  FT  D D V+
Sbjct:  453 ARGNFRDEEVACVMERHFFDSARN---ARARAGAAEQQGHKEKFMVAPGDCGAAGAVWWTRRAHLDGGAAVSGPGVQTL-DILVVVVPPETLLDRLGRPGAGGRGXXXXXXXXXSDLFRGLGQFVDGIRSSAAGFSRLVLVLEG-------AKAAIDKRWAASAHSSSSSGNGKGPAGRCARDDEFEDAQCWLLIHKEVETRLTKNSEETGQYLWDLTKSLSSMPYKDDVTELHCVARSKTEARGSERFPEKEK----ELMDTWVRMLEQVQHVSGNKAVEIAAHYPLPRDLVAALSDPSVPEGDRAGLLQRKMGSSSEQRKC--ARRVFELFTQEDGDFVI 777          
BLAST of jgi.p|Trimin1|348172 vs. uniprot
Match: A0A7S0XJS5_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0XJS5_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 1.130e-8
Identity = 50/172 (29.07%), Postives = 81/172 (47.09%), Query Frame = 0
Query:  457 PGEDALQDCLAWLMVARGVEARVTRTPAETGQYLWDLTRALAHGPYRAALTDLHCVSRAKVTVAGGALCGADNAGGGATAADVWLRQLMQVPGVSEPKARNIVRAYPSARRLVHAFT------------DPAQPQPAALLAHVMSE--RRELVLSERVYRFFTTRDPDMVVM 614
            P    LQD + W++V   VE+ +          ++ + R LA  PY    T+L C+ + K   A       D+      A DVWLRQL Q+PG+SE +A++IV  +P+ + L  A+               A  + ++LL    S   +R   LS+ +YR  T+ DP  +++
Sbjct:   67 PTVKELQDAMQWVLVQFQVESILCPNDEFLQSTVFKMARGLAEKPYIKQATELECIKKIKQGCA-------DSNNPLEKATDVWLRQLQQLPGLSETRAQHIVEHFPTIQSLWQAYQWEHHRXXXXXXXXDADERCSSLLEDKFSAGGKRYKKLSDSLYRVITSNDPHEMIL 231          
BLAST of jgi.p|Trimin1|348172 vs. uniprot
Match: A0A1E7FB83_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FB83_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 2.170e-6
Identity = 51/175 (29.14%), Postives = 80/175 (45.71%), Query Frame = 0
Query:  457 PGEDALQDCLAWLMVARGVEARVTRTPAETGQYLWDLTRALAHGPYRAALTDLHCVSRAK--VTVAGGALCGADNAGGGATAADVWLRQLMQVPGVSEPKARNIVRAYPSARRLVHAFT-------------DPAQPQPAALLAHVMS--ERRELVLSERVYRFFTTRDPDMVVM 614
            P    L+D + WL+V   VE  +  +       +  +TR+LA   Y   +T+L C+ + K   T     L           A DVW+RQL Q+PG+SE +A++ V  YP+ + L  A+              + A    +ALL    S    R   LS+ VYR  T+ DP+ +++
Sbjct:  366 PTVKELEDAMQWLLVQFQVECILCSSIELMQLTIHKMTRSLAEKRYTNQVTELECIKKIKQGCTALDSKL---------EKAKDVWIRQLQQLPGMSESRAQHAVFHYPTCQSLWQAYQREHYQQQHDNDNKNDADSSCSALLEDKFSGDNTRYRKLSDSVYRVMTSNDPNEMIL 531          
BLAST of jgi.p|Trimin1|348172 vs. uniprot
Match: A0A7R9UC98_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UC98_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 3.750e-5
Identity = 36/112 (32.14%), Postives = 55/112 (49.11%), Query Frame = 0
Query:  458 GEDALQDCLAWLMVARGVEARVTRTPAETGQYLWDLTRALAHGPYRAALTD---LHCVSRAKVTVAGGALCGADNA---GGGATAADVWLRQLMQVPGVSEPKARNIVRAYP 563
            G + ++  LAW+    G+ A+      E  +YL D   A+A   Y  +LTD   L  + + KV+      C   +    G    A + ++R LM +P VSEPKA+ IV+ YP
Sbjct:   36 GPEDVRHALAWMYARLGIAAQTFEAEQEVAEYLVDTASAVAKARYDPSLTDRYDLRTLPKLKVS------CNISHEFPEGAAEDAINTFMRMLMMIPNVSEPKAQAIVQKYP 141          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348172 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A836CHI1_9STRA8.970e-257100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FI47_ECTSI1.750e-3132.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S0XJS5_9STRA1.130e-829.07Hypothetical protein n=1 Tax=Pseudo-nitzschia deli... [more]
A0A1E7FB83_9STRA2.170e-629.14Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
A0A7R9UC98_9STRA3.750e-532.14Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 241..261
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 128..277
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 23..45
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 70..114
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 227..261
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 167..188
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..56
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 85..114
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 128..158
NoneNo IPR availablePANTHERPTHR21077:SF5METHYL METHANESULFONATE SENSITIVITY 4coord: 75..277
coord: 422..612
IPR042530EME1/EME2, C-terminal domainGENE3D1.10.150.670coord: 530..614
e-value: 8.7E-18
score: 66.6
IPR033310Mms4/EME1/EME2PANTHERPTHR21077EME1 PROTEINcoord: 75..277
coord: 422..612

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_20contigContig_20:916008..918367 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348172mRNA_4161Tribonema minus UTEX_B_3156 mRNAContig_20 915992..918394 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|348172|estExt_Genemark1.C_Ctg_200125 ID=Trimin1|348172|estExt_Genemark1.C_Ctg_200125|Name=jgi.p|Trimin1|348172|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=615bp
MERSFSASRDDTAFAPRGTRQPPIKNNGCSPLKKSSSSSSANGNGGGRVV
DLCIDSDSDAGAPAAAAAAWGLDVDDDDEVMELTPPSYSQRSDASEASSA
GSKRSARSAYGGEESQCSLTARYDGLALASQQSVGSQYGDQYDGPAFPSQ
QSFGSQHSDYGGAAFAAVSRSSSSNSACAGTGSSSKGGGGGGSKGGGGDG
ASSQRGGGSSGKPSGGGGGSGGGGDDGEPAPKRKRARLTPEEREARERAK
AQEKADKAAARAAAKAESAAAKAREKEGKARAKLERAVATGRHVAQEVAC
VLDAGWLDAMAEPDRAALTEAAARQGDDKEAFKVLQARGAVRGAIWWTRR
GLLDGGAAAEGDGVSIMQELRVVAVDPAEFADALAVPGAPPDTYPGVGAL
VDAVAARLCGGGAGGGAARVLLLLQGVARELHRRVAARHRAAQRAGAAAA
AAAAACPGEDALQDCLAWLMVARGVEARVTRTPAETGQYLWDLTRALAHG
PYRAALTDLHCVSRAKVTVAGGALCGADNAGGGATAADVWLRQLMQVPGV
SEPKARNIVRAYPSARRLVHAFTDPAQPQPAALLAHVMSERRELVLSERV
YRFFTTRDPDMVVM*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR042530EME1/EME2_C
IPR033310Mms4/EME1/EME2