Trimin1|348147|estExt_Genemark1.C_Ctg_200080 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|348147
Unique NameTrimin1|348147|estExt_Genemark1.C_Ctg_200080
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length97
Homology
BLAST of jgi.p|Trimin1|348147 vs. uniprot
Match: A0A835ZBW8_9STRA (CDGSH iron sulfur domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBW8_9STRA)

HSP 1 Score: 192 bits (489), Expect = 2.930e-62
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0
Query:    1 MQTVFAVALLASVASVPAFVPSSSIRAPTHLSERINNKIDLESPKVATMETLPAGGKKVYCRCWKSATFPLCNGAHVKHNEEVGDNVGPLIVSVEK 96
            MQTVFAVALLASVASVPAFVPSSSIRAPTHLSERINNKIDLESPKVATMETLPAGGKKVYCRCWKSATFPLCNGAHVKHNEEVGDNVGPLIVSVEK
Sbjct:    1 MQTVFAVALLASVASVPAFVPSSSIRAPTHLSERINNKIDLESPKVATMETLPAGGKKVYCRCWKSATFPLCNGAHVKHNEEVGDNVGPLIVSVEK 96          
BLAST of jgi.p|Trimin1|348147 vs. uniprot
Match: A0A7S2UEE3_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UEE3_9STRA)

HSP 1 Score: 115 bits (287), Expect = 2.020e-31
Identity = 56/91 (61.54%), Postives = 67/91 (73.63%), Query Frame = 0
Query:    6 AVALLASVASVPAFVPSSSIRAPTHLSERINNKIDLESPKVATMETLPAGGKKVYCRCWKSATFPLCNGAHVKHNEEVGDNVGPLIVSVEK 96
            A+ALL S  +   FV  S   +    +ERIN ++DL+SPKVATME L  G KKVYCRCW+S TFPLC+G+H+KHNE  GDNVGPLIVSV K
Sbjct:    7 AIALLTSQVTAFTFVAKSHSASTKLFAERINTQVDLDSPKVATMEKLEPGTKKVYCRCWQSGTFPLCDGSHMKHNEATGDNVGPLIVSVPK 97          
BLAST of jgi.p|Trimin1|348147 vs. uniprot
Match: B8CEB8_THAPS (ZnF_CDGSH domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CEB8_THAPS)

HSP 1 Score: 111 bits (278), Expect = 1.860e-30
Identity = 51/65 (78.46%), Postives = 56/65 (86.15%), Query Frame = 0
Query:   32 SERINNKIDLESPKVATMETLPAGGKKVYCRCWKSATFPLCNGAHVKHNEEVGDNVGPLIVSVEK 96
            S RINNKIDL+SPKVATM+ +  G KKVYCRCWKS TFPLC+ AHV HN+E GDNVGPLIVSVEK
Sbjct:    1 SARINNKIDLDSPKVATMDKICDGEKKVYCRCWKSETFPLCDAAHVAHNKETGDNVGPLIVSVEK 65          
BLAST of jgi.p|Trimin1|348147 vs. uniprot
Match: A0A7S1GHV5_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GHV5_CYCTE)

HSP 1 Score: 110 bits (276), Expect = 1.860e-29
Identity = 53/92 (57.61%), Postives = 63/92 (68.48%), Query Frame = 0
Query:    5 FAVALLASVASVPAFVPSSSIRAPTHLSERINNKIDLESPKVATMETLPAGGKKVYCRCWKSATFPLCNGAHVKHNEEVGDNVGPLIVSVEK 96
            F  A++ + A+    +P + +     L  RIN +IDLES KV TMETL   GKKVYCRCW+S TFPLC+G H KHNE  GDNVGPLIVSV K
Sbjct:   28 FLAAMIIAQAAAFTAIPQARVGTKLFLENRINEQIDLESAKVVTMETLAEPGKKVYCRCWQSGTFPLCDGTHAKHNEATGDNVGPLIVSVPK 119          
BLAST of jgi.p|Trimin1|348147 vs. uniprot
Match: A0A7S3HKP5_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HKP5_9STRA)

HSP 1 Score: 108 bits (269), Expect = 3.590e-28
Identity = 48/64 (75.00%), Postives = 53/64 (82.81%), Query Frame = 0
Query:   33 ERINNKIDLESPKVATMETLPAGGKKVYCRCWKSATFPLCNGAHVKHNEEVGDNVGPLIVSVEK 96
            ++INNKIDL+S KV T + L AG KKVYCRCW S TFPLCNGAH KHNE  GDNVGPLIV+VEK
Sbjct:   75 DKINNKIDLDSAKVVTQDKLKAGDKKVYCRCWLSDTFPLCNGAHAKHNEATGDNVGPLIVAVEK 138          
BLAST of jgi.p|Trimin1|348147 vs. uniprot
Match: A0A7S1S5T6_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1S5T6_ALECA)

HSP 1 Score: 107 bits (267), Expect = 1.190e-27
Identity = 47/63 (74.60%), Postives = 51/63 (80.95%), Query Frame = 0
Query:   34 RINNKIDLESPKVATMETLPAGGKKVYCRCWKSATFPLCNGAHVKHNEEVGDNVGPLIVSVEK 96
            +IN  IDLESPKV T + L AG KKVYCRCW S TFPLC+GAH KHNEE GDNVGPLIV+ EK
Sbjct:   96 KINKSIDLESPKVVTQDKLAAGAKKVYCRCWMSKTFPLCDGAHAKHNEETGDNVGPLIVAAEK 158          
BLAST of jgi.p|Trimin1|348147 vs. uniprot
Match: A0A6S9KZB4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9KZB4_HETAK)

HSP 1 Score: 105 bits (262), Expect = 1.440e-27
Identity = 52/78 (66.67%), Postives = 60/78 (76.92%), Query Frame = 0
Query:   23 SSIRAPTHLS----ERINNKIDLESPKVATMETLPAGGKKVYCRCWKSATFPLCNGAHVKHNEEVGDNVGPLIVSVEK 96
            SS+R+ T L+     RIN KIDLES KVATME L +G KKVYCRCWKS TFPLC+G H+ HN+  GDNVGPLIV+V K
Sbjct:   25 SSVRSSTALNMADEARINTKIDLESEKVATMEALSSGEKKVYCRCWKSDTFPLCDGKHMDHNKACGDNVGPLIVTVAK 102          
BLAST of jgi.p|Trimin1|348147 vs. uniprot
Match: A0A7S2I006_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2I006_9STRA)

HSP 1 Score: 105 bits (262), Expect = 2.560e-27
Identity = 47/63 (74.60%), Postives = 53/63 (84.13%), Query Frame = 0
Query:   34 RINNKIDLESPKVATMETLPAGGKKVYCRCWKSATFPLCNGAHVKHNEEVGDNVGPLIVSVEK 96
            +IN + DL+SPKV T E L AG KKVYCRCW+S TFPLC+G+HVKHNEE GDNVGPLIVSV K
Sbjct:   59 KINFEKDLDSPKVVTQEKLEAGDKKVYCRCWQSGTFPLCDGSHVKHNEETGDNVGPLIVSVAK 121          
BLAST of jgi.p|Trimin1|348147 vs. uniprot
Match: D8LP22_ECTSI (CDGSH iron sulfur domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP22_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 4.010e-27
Identity = 55/100 (55.00%), Postives = 71/100 (71.00%), Query Frame = 0
Query:    1 MQTVFAVALLASVASVPAFVPSSS--IRAPT-HLSERINN-KIDLESPKVATMETLPAGGKKVYCRCWKSATFPLCNGAHVKHNEEVGDNVGPLIVSVEK 96
            M+T  A+AL+    +    +P+    +RA T   +E+IN  + +L+ PKV TM+++ AGGKKVYCRCWKS TFPLC+GAHVKHNE  GDNVGPLIVS  K
Sbjct:    1 MKTAGAIALVTLGCANAFVIPAGRTVVRAETARAAEKINTIEFELDKPKVVTMDSVDAGGKKVYCRCWKSGTFPLCDGAHVKHNEATGDNVGPLIVSGPK 100          
BLAST of jgi.p|Trimin1|348147 vs. uniprot
Match: L1J777_GUITC (ZnF_CDGSH domain-containing protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1J777_GUITC)

HSP 1 Score: 103 bits (256), Expect = 4.190e-27
Identity = 45/66 (68.18%), Postives = 56/66 (84.85%), Query Frame = 0
Query:   31 LSERINNKIDLESPKVATMETLPAGGKKVYCRCWKSATFPLCNGAHVKHNEEVGDNVGPLIVSVEK 96
            +S +IN+KI+L++PKVAT +T+  G K VYCRCWKSATFP C+GAH KHN+E GDNVGPLIV+V K
Sbjct:    1 MSGKINHKIELDNPKVATTDTIEPGQKVVYCRCWKSATFPKCDGAHNKHNQETGDNVGPLIVNVPK 66          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348147 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZBW8_9STRA2.930e-62100.00CDGSH iron sulfur domain-containing protein n=1 Ta... [more]
A0A7S2UEE3_9STRA2.020e-3161.54Hypothetical protein n=1 Tax=Attheya septentrional... [more]
B8CEB8_THAPS1.860e-3078.46ZnF_CDGSH domain-containing protein (Fragment) n=1... [more]
A0A7S1GHV5_CYCTE1.860e-2957.61Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S3HKP5_9STRA3.590e-2875.00Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S1S5T6_ALECA1.190e-2774.60Hypothetical protein n=1 Tax=Alexandrium catenella... [more]
A0A6S9KZB4_HETAK1.440e-2766.67Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2I006_9STRA2.560e-2774.60Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
D8LP22_ECTSI4.010e-2755.00CDGSH iron sulfur domain-containing protein n=1 Ta... [more]
L1J777_GUITC4.190e-2768.18ZnF_CDGSH domain-containing protein n=2 Tax=Guilla... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018967Iron-binding zinc finger, CDGSH typeSMARTSM00704znf_cdgshcoord: 45..82
e-value: 3.4E-9
score: 46.6
IPR042216MitoNEET, CDGSH iron-sulfur domainGENE3D3.40.5.90coord: 50..96
e-value: 2.0E-19
score: 71.0
IPR045131CDGSH iron-sulfur domain-containing protein 1/2PANTHERPTHR13680CDGSH IRON-SULFUR DOMAIN-CONTAINING PROTEIN 1coord: 13..93

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_20contigContig_20:662164..663991 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348147mRNA_4121Tribonema minus UTEX_B_3156 mRNAContig_20 662128..664300 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|348147|estExt_Genemark1.C_Ctg_200080 ID=Trimin1|348147|estExt_Genemark1.C_Ctg_200080|Name=jgi.p|Trimin1|348147|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=97bp
MQTVFAVALLASVASVPAFVPSSSIRAPTHLSERINNKIDLESPKVATME
TLPAGGKKVYCRCWKSATFPLCNGAHVKHNEEVGDNVGPLIVSVEK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR018967FeS-contain_CDGSH-typ
IPR042216MitoNEET_CISD
IPR045131CISD1/2