Trimin1|348132|estExt_Genemark1.C_Ctg_200040 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|348132
Unique NameTrimin1|348132|estExt_Genemark1.C_Ctg_200040
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length1241
Homology
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BLAST of jgi.p|Trimin1|348132 vs. uniprot
Match: A0A836CI39_9STRA (GRIP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI39_9STRA)

HSP 1 Score: 1295 bits (3350), Expect = 0.000e+0
Identity = 1240/1240 (100.00%), Postives = 1240/1240 (100.00%), Query Frame = 0 
Query:    1 MFKNFGDVFSVLDLDQLADEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLFASPASATQPQSLLGDTLTGFWSTPTRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAAATEDGWEEWDDGATVPDSKPVDITAAAAAHAPPPAPETPKATPAMPLPSPRPPAXXXXXXXXXXXXXXXXXXXXXXAEMKAKLDTALGTLRRLKGVVLQREGELAEAARAAERSAQGRAELQAECAQLQRALSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDKPAGADRDEPTCADAEQQPQGTECEAQSLAARLAAAEAXXXXXXXXXXXXXXXXXXXXXRAAVMGAALEEAAESAQLAXXXXXXXXXXXXXXXXXXXXESAEQMHEYALAAAAEAAAADALAHAAAMEAVEGRLAAADEEARQXXXXXAGAAECMRRLEGQSTDGMKLLDVVDCCSACSAAGKAELDESQELSAQLLRELGSERTAAEEAQRTLEQQVAAALRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASLAQRAADAQARVAALEQELXXXXXXXXXXXXXRSWSVARVHYGSECVCGGTAIVLGANAPCWRKARARVAALGRELQGATDRKQQLEAQLSQYKLRSVEALRKFTAQAAELSAARNALEDEADALRAAAAEAQRAAQFGHRAEAAAATSNFHSVFAMILPDALTQAAAXXXXXXXAQEDLGRAEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQCAQLQARVLELEXXXXXXXXXXXXXXXXXXXXXXXEAAALAQRLGSPAPASPSAANGYFSSXXXXXXXXXXXXXXXXXXXXXASGSVTPSADGGAXXXXXXXXXXXXXXXXXXXXDAFGAGNGVRADGDVVSSGYGAAXXXXXXXXXXXXXXXXXXDPSMTKLRASSSFAGSVDGXXXSSIDGSEHGRRAXXXXXXXXQQLWNVHTPRRSLPGSFSIGGGGGATLAAAAGAASIGEDGGDXXXXXXXXXXXXRALAREXXXXDAEAAHAQEGDDAARRAQLFLVDQLQEARRRDQARAQALTRELEGALRALEAAQATESTLKNKLEKFENGVRREEVLHKSPSAHVNLEYLKAAVVRYMQSDEPSEHSRLLPVIATILQLSTSEQQAVATSIKRRSSASAVLPFSWFPAGGPGKT 1240
            MFKNFGDVFSVLDLDQLADEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLFASPASATQPQSLLGDTLTGFWSTPTRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAAATEDGWEEWDDGATVPDSKPVDITAAAAAHAPPPAPETPKATPAMPLPSPRPPAXXXXXXXXXXXXXXXXXXXXXXAEMKAKLDTALGTLRRLKGVVLQREGELAEAARAAERSAQGRAELQAECAQLQRALSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDKPAGADRDEPTCADAEQQPQGTECEAQSLAARLAAAEAXXXXXXXXXXXXXXXXXXXXXRAAVMGAALEEAAESAQLAXXXXXXXXXXXXXXXXXXXXESAEQMHEYALAAAAEAAAADALAHAAAMEAVEGRLAAADEEARQXXXXXAGAAECMRRLEGQSTDGMKLLDVVDCCSACSAAGKAELDESQELSAQLLRELGSERTAAEEAQRTLEQQVAAALRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASLAQRAADAQARVAALEQELXXXXXXXXXXXXXRSWSVARVHYGSECVCGGTAIVLGANAPCWRKARARVAALGRELQGATDRKQQLEAQLSQYKLRSVEALRKFTAQAAELSAARNALEDEADALRAAAAEAQRAAQFGHRAEAAAATSNFHSVFAMILPDALTQAAAXXXXXXXAQEDLGRAEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQCAQLQARVLELEXXXXXXXXXXXXXXXXXXXXXXXEAAALAQRLGSPAPASPSAANGYFSSXXXXXXXXXXXXXXXXXXXXXASGSVTPSADGGAXXXXXXXXXXXXXXXXXXXXDAFGAGNGVRADGDVVSSGYGAAXXXXXXXXXXXXXXXXXXDPSMTKLRASSSFAGSVDGXXXSSIDGSEHGRRAXXXXXXXXQQLWNVHTPRRSLPGSFSIGGGGGATLAAAAGAASIGEDGGDXXXXXXXXXXXXRALAREXXXXDAEAAHAQEGDDAARRAQLFLVDQLQEARRRDQARAQALTRELEGALRALEAAQATESTLKNKLEKFENGVRREEVLHKSPSAHVNLEYLKAAVVRYMQSDEPSEHSRLLPVIATILQLSTSEQQAVATSIKRRSSASAVLPFSWFPAGGPGKT
Sbjct:    1 MFKNFGDVFSVLDLDQLADEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLFASPASATQPQSLLGDTLTGFWSTPTRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAAATEDGWEEWDDGATVPDSKPVDITAAAAAHAPPPAPETPKATPAMPLPSPRPPAXXXXXXXXXXXXXXXXXXXXXXAEMKAKLDTALGTLRRLKGVVLQREGELAEAARAAERSAQGRAELQAECAQLQRALSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDKPAGADRDEPTCADAEQQPQGTECEAQSLAARLAAAEAXXXXXXXXXXXXXXXXXXXXXRAAVMGAALEEAAESAQLAXXXXXXXXXXXXXXXXXXXXESAEQMHEYALAAAAEAAAADALAHAAAMEAVEGRLAAADEEARQXXXXXAGAAECMRRLEGQSTDGMKLLDVVDCCSACSAAGKAELDESQELSAQLLRELGSERTAAEEAQRTLEQQVAAALRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASLAQRAADAQARVAALEQELXXXXXXXXXXXXXRSWSVARVHYGSECVCGGTAIVLGANAPCWRKARARVAALGRELQGATDRKQQLEAQLSQYKLRSVEALRKFTAQAAELSAARNALEDEADALRAAAAEAQRAAQFGHRAEAAAATSNFHSVFAMILPDALTQAAAXXXXXXXAQEDLGRAEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQCAQLQARVLELEXXXXXXXXXXXXXXXXXXXXXXXEAAALAQRLGSPAPASPSAANGYFSSXXXXXXXXXXXXXXXXXXXXXASGSVTPSADGGAXXXXXXXXXXXXXXXXXXXXDAFGAGNGVRADGDVVSSGYGAAXXXXXXXXXXXXXXXXXXDPSMTKLRASSSFAGSVDGXXXSSIDGSEHGRRAXXXXXXXXQQLWNVHTPRRSLPGSFSIGGGGGATLAAAAGAASIGEDGGDXXXXXXXXXXXXRALAREXXXXDAEAAHAQEGDDAARRAQLFLVDQLQEARRRDQARAQALTRELEGALRALEAAQATESTLKNKLEKFENGVRREEVLHKSPSAHVNLEYLKAAVVRYMQSDEPSEHSRLLPVIATILQLSTSEQQAVATSIKRRSSASAVLPFSWFPAGGPGKT 1240
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348132 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CI39_9STRA0.000e+0100.00GRIP domain-containing protein n=1 Tax=Tribonema m... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 436..456
NoneNo IPR availableCOILSCoilCoilcoord: 506..561
NoneNo IPR availableCOILSCoilCoilcoord: 23..43
NoneNo IPR availableCOILSCoilCoilcoord: 573..604
NoneNo IPR availableCOILSCoilCoilcoord: 748..768
NoneNo IPR availableCOILSCoilCoilcoord: 243..270
NoneNo IPR availableCOILSCoilCoilcoord: 386..413
NoneNo IPR availableCOILSCoilCoilcoord: 1108..1156
NoneNo IPR availableCOILSCoilCoilcoord: 644..710
NoneNo IPR availableCOILSCoilCoilcoord: 335..362
NoneNo IPR availableCOILSCoilCoilcoord: 818..866
NoneNo IPR availableGENE3D1.10.220.60GRIP domaincoord: 1168..1225
e-value: 2.9E-6
score: 29.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 985..1034
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 268..285
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 164..196
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 14..205
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 268..335
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 28..109
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 970..1041
NoneNo IPR availablePANTHERPTHR23157GRIP AND COILED-COIL DOMAIN-CONTAINING PROTEIN 1coord: 512..1231
IPR000237GRIP domainSMARTSM007551gripcoord: 1169..1216
e-value: 1.7E-8
score: 44.2
IPR000237GRIP domainPFAMPF01465GRIPcoord: 1171..1213
e-value: 3.2E-14
score: 52.5
IPR000237GRIP domainPROSITEPS50913GRIPcoord: 1166..1216
score: 12.320366

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_20contigContig_20:320002..333238 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348132mRNA_4078Tribonema minus UTEX_B_3156 mRNAContig_20 320002..333336 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|348132|estExt_Genemark1.C_Ctg_200040 ID=Trimin1|348132|estExt_Genemark1.C_Ctg_200040|Name=jgi.p|Trimin1|348132|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=1241bp
MFKNFGDVFSVLDLDQLADEDDKQQKQSSKVQQQQQRQQQQQQQQPPQQQ
QQQKKQQLFASPASATQPQSLLGDTLTGFWSTPTRAAAAQPPPQQQAQQQ
EVQWQQAKPSPQAAPPPRKRTPARRKPQSGAAATEDGWEEWDDGATVPDS
KPVDITAAAAAHAPPPAPETPKATPAMPLPSPRPPAATPPPVAAAAAAEP
PQQGAAAAAEMKAKLDTALGTLRRLKGVVLQREGELAEAARAAERSAQGR
AELQAECAQLQRALSQQQQQQQNANGFNSDEVAAAGSSASDGVAGGGGTS
AAAAAAADDKPAGADRDEPTCADAEQQPQGTECEAQSLAARLAAAEARNQ
ELAAALNQQQQCDACSAQRAAVMGAALEEAAESAQLAGALEEARQAAALA
QQLRQALESAEQMHEYALAAAAEAAAADALAHAAAMEAVEGRLAAADEEA
RQARAAAAGAAECMRRLEGQSTDGMKLLDVVDCCSACSAAGKAELDESQE
LSAQLLRELGSERTAAEEAQRTLEQQVAAALRRVEESAAAAAEAETRARS
AEAAAAALEARSSDTAAAALADRASLAQRAADAQARVAALEQELQARVAA
LERELQLRSWSVARVHYGSECVCGGTAIVLGANAPCWRKARARVAALGRE
LQGATDRKQQLEAQLSQYKLRSVEALRKFTAQAAELSAARNALEDEADAL
RAAAAEAQRAAQFGHRAEAAAATSNFHSVFAMILPDALTQAAASAAAAAA
AQEDLGRAEAARASAETALADAAAARAAAVSSDRHAQAARAAAASSDMAA
QAALADATAAHAAAASSDRDAQEQCAQLQARVLELERQRSALEAQAAEAQ
RALAAAQAREAAALAQRLGSPAPASPSAANGYFSSGGGVAIATPPPARRV
SSSKLLASGSVTPSADGGAALGGHALNGSSGGGGAGGGGDAFGAGNGVRA
DGDVVSSGYGAAGSGGGDGGGGGGKGAGGGDPSMTKLRASSSFAGSVDGG
GSSSIDGSEHGRRAQQQQQQQRQQLWNVHTPRRSLPGSFSIGGGGGATLA
AAAGAASIGEDGGDVGAALAAVAAEARALAREGAALDAEAAHAQEGDDAA
RRAQLFLVDQLQEARRRDQARAQALTRELEGALRALEAAQATESTLKNKL
EKFENGVRREEVLHKSPSAHVNLEYLKAAVVRYMQSDEPSEHSRLLPVIA
TILQLSTSEQQAVATSIKRRSSASAVLPFSWFPAGGPGKT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000237GRIP_dom