Trimin1|348089|estExt_Genemark1.C_Ctg_190116 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|348089
Unique NameTrimin1|348089|estExt_Genemark1.C_Ctg_190116
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length183
Homology
BLAST of jgi.p|Trimin1|348089 vs. uniprot
Match: A0A835Z4L3_9STRA (Peroxisomal membrane protein PEX14 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4L3_9STRA)

HSP 1 Score: 331 bits (848), Expect = 3.150e-114
Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0
Query:    1 MSFREEMVARAVKFLLHPKVVDAPLSKKISFLEEKELTREEIDEALKRAESPESIGAAASTSKAKAQRETIQRFEHAGVQGVITGGVLHLSAVAAKDLGADAAGQARQVLEQIDAVLQAKGASRSRIISATVFVRNAQTDGGAVAAEWELWLGGENHPAFACVEAGTAVPAQLVTIQVTAAM 182
            MSFREEMVARAVKFLLHPKVVDAPLSKKISFLEEKELTREEIDEALKRAESPESIGAAASTSKAKAQRETIQRFEHAGVQGVITGGVLHLSAVAAKDLGADAAGQARQVLEQIDAVLQAKGASRSRIISATVFVRNAQTDGGAVAAEWELWLGGENHPAFACVEAGTAVPAQLVTIQVTAAM
Sbjct:    1 MSFREEMVARAVKFLLHPKVVDAPLSKKISFLEEKELTREEIDEALKRAESPESIGAAASTSKAKAQRETIQRFEHAGVQGVITGGVLHLSAVAAKDLGADAAGQARQVLEQIDAVLQAKGASRSRIISATVFVRNAQTDGGAVAAEWELWLGGENHPAFACVEAGTAVPAQLVTIQVTAAM 182          
BLAST of jgi.p|Trimin1|348089 vs. uniprot
Match: D8LIY3_ECTSI (Peroxisomal membrane protein PEX14 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIY3_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 1.440e-17
Identity = 66/186 (35.48%), Postives = 99/186 (53.23%), Query Frame = 0
Query:    2 SFREEMVARAVKFLLHPKVVDAPLSKKISFLEEKELTREEIDEALKRAESPESIGAAASTSKAKAQRETIQRFEHAGV--QGVITGGVLHLSA-------VAAKDLGADAAG---------QARQVLEQIDAVLQAKGASRSRIISATVFVRNAQTDGGAVAAEWELWLGGENHPAFACVEAGTAV 169
              R++MV RAV FL HPKV  AP +K+I+FL++K+LT EEI EAL++A    +  A+A T  A     T +RF+   V  + V +GG++ +S         A  D G    G         QA + L++I  +L+  G+S S+++SA V VR+   D   V   W  W+  +N PA   ++ G  V
Sbjct:    3 DIRQDMVKRAVSFLRHPKVKGAPEAKQIAFLKDKQLTAEEIGEALRKAAELAAAEASAKTRAALVAAPT-KRFQKGSVRSEAVASGGIVFISGQTALPSPTAGDDSGEGDVGVAESLSPEQQAARALDKIKELLEEVGSSTSKVVSALVCVRDLGQDLPGVEKAWGRWIDKDNPPARTVIQTGAIV 187          
BLAST of jgi.p|Trimin1|348089 vs. uniprot
Match: A0A3F2UCK5_9HYPH (RidA family protein n=1 Tax=Mesorhizobium sp. YM1C-6-2 TaxID=1827501 RepID=A0A3F2UCK5_9HYPH)

HSP 1 Score: 71.6 bits (174), Expect = 5.950e-13
Identity = 44/102 (43.14%), Postives = 63/102 (61.76%), Query Frame = 0
Query:   80 QGVITGGVLHLSAVAAKDLGADAAGQARQVLEQIDAVLQAKGASRSRIISATVFVRNAQTDGGAVAAEWELWLGGENHPAFACVEAGTAVPAQLVTIQVTAA 181
            QGV   G+   SA  AKD   DAAGQ R+VL++IDA+L  +G  +S I+SAT+++ +   D  A+ + W+ W+  +  PA ACVEA  + P   V IQ+ AA
Sbjct:   14 QGVSWNGMFVTSAQVAKDFDLDAAGQTREVLDKIDALLAEQGYDKSNIVSATIWLADI-ADYAAMNSVWDAWVSTDEPPARACVEARFSSPRIKVEIQIMAA 114          
BLAST of jgi.p|Trimin1|348089 vs. uniprot
Match: A0A7U7ELF3_9PSED (Aminoacrylate peracid reductase RutC n=1 Tax=Pseudomonas carbonaria TaxID=2762745 RepID=A0A7U7ELF3_9PSED)

HSP 1 Score: 71.6 bits (174), Expect = 6.260e-13
Identity = 41/103 (39.81%), Postives = 58/103 (56.31%), Query Frame = 0
Query:   80 QGVITGGVLHLSAVAAKDLGADAAGQARQVLEQIDAVLQAKGASRSRIISATVFVRNAQTDGGAVAAEWELWLGGENHPAFACVEAGTAVPAQLVTIQVTAAM 182
            + VI  G ++L+   A DL  D   Q R+ L  ID +L   G+ RSRI+SAT+++++   D   + AEW+ WL     PA ACVEA    P  LV I + AA+
Sbjct:   14 EAVIHNGTVYLAGQLADDLTGDICQQTRETLASIDRLLAEAGSDRSRILSATIYLKDIAADYAGLNAEWDAWLVPGTAPARACVEANMYAPEVLVEISIVAAL 116          
BLAST of jgi.p|Trimin1|348089 vs. uniprot
Match: A0A5Q2QE15_9GAMM (RidA family protein n=1 Tax=Litoricola lipolytica TaxID=418701 RepID=A0A5Q2QE15_9GAMM)

HSP 1 Score: 70.1 bits (170), Expect = 2.260e-12
Identity = 47/114 (41.23%), Postives = 68/114 (59.65%), Query Frame = 0
Query:   71 IQRFEHAG--VQGVITGGVLHLSAVAAKDLGADAAGQARQVLEQIDAVLQAKGASRSRIISATVFVRNAQTDGGAVAAEWELWLGGENHPAFACVEAGTAVPAQLVTIQVTAAM 182
            IQRFE      + VI  G ++L    A D  AD + Q R  L +IDA+L++ G+ R+R++SAT++V+    D  A+ A W+ W+   + PA ACV+A  A  A LV I VTAA+
Sbjct:    2 IQRFETKARMSRAVIHNGTVYLCGQVAADADADISEQTRTTLAKIDALLESVGSDRTRLLSATIYVKTMD-DFAAMNAVWDAWVPEGHAPARACVQAAMARDALLVEITVTAAV 114          
BLAST of jgi.p|Trimin1|348089 vs. uniprot
Match: A0A4P6F7M9_9MICO (RidA family protein n=1 Tax=Agromyces protaetiae TaxID=2509455 RepID=A0A4P6F7M9_9MICO)

HSP 1 Score: 69.7 bits (169), Expect = 3.100e-12
Identity = 42/103 (40.78%), Postives = 64/103 (62.14%), Query Frame = 0
Query:   80 QGVITGGVLHLSAVAAKDLGADAAGQARQVLEQIDAVLQAKGASRSRIISATVFVRNAQTDGGAVAAEWELWLGGENHPAFACVEAGTAVPAQLVTIQVTAAM 182
            Q V+ GG+ +L+   A   GAD   Q+R  L Q+DA+L+A G  +S++++AT+++ +  T G  + + W+ W+ GEN PA A VEA  A P   V  QVTAA+
Sbjct:   14 QAVVHGGIAYLAGQVAA--GADVVEQSRAALAQVDALLEAAGTDKSKLLTATIYLADIATFGD-MNSVWDEWVDGENPPARATVEAKLATPEFFVEFQVTAAI 113          
BLAST of jgi.p|Trimin1|348089 vs. uniprot
Match: A0A1H0GGX4_9HYPH (Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family n=1 Tax=Ensifer sp. YR511 TaxID=1855294 RepID=A0A1H0GGX4_9HYPH)

HSP 1 Score: 68.6 bits (166), Expect = 8.820e-12
Identity = 48/113 (42.48%), Postives = 66/113 (58.41%), Query Frame = 0
Query:   71 IQRFEHAG-VQGVIT-GGVLHLSAVAAKDLGADAAGQARQVLEQIDAVLQAKGASRSRIISATVFVRNAQTDGGAVAAEWELWLGGENHPAFACVEAGTAVPAQLVTIQVTAA 181
            I RFE    +  V+T GGV +L+ + A DL  D AGQ RQVL + DA ++     +SR++SAT+++R+  +D  A+   WE W+   N PA A  EA  A P  LV I  TAA
Sbjct:    2 IDRFEKGPRMSRVVTHGGVAYLAGITADDLSQDIAGQTRQVLAKADANMEKAKTDKSRLLSATIWLRDI-SDFDAMNVVWESWVDASNPPARATCEARLAKPQILVEITFTAA 113          
BLAST of jgi.p|Trimin1|348089 vs. uniprot
Match: UPI0010C11760 (RidA family protein n=5 Tax=Roseomonas TaxID=125216 RepID=UPI0010C11760)

HSP 1 Score: 67.8 bits (164), Expect = 1.820e-11
Identity = 40/93 (43.01%), Postives = 57/93 (61.29%), Query Frame = 0
Query:   88 LHLSAVAAKDLGADAAGQARQVLEQIDAVLQAKGASRSRIISATVFVRNAQTDGGAVAAEWELWLGGENHPAFACVEAGTAVPAQLVTIQVTA 180
            ++L+ + A DL  D  GQ  +VL +IDA L+A G  ++R+++AT++V++   D GA+   W  WL     PA ACVEA  A P  LV I VTA
Sbjct:   23 VYLAGMTADDLSKDIKGQTAEVLAKIDAALEANGTDKTRMLTATIWVKHI-ADRGAMNEVWTPWLPPGGAPARACVEANMADPRHLVEIMVTA 114          
BLAST of jgi.p|Trimin1|348089 vs. uniprot
Match: A0A1F4CVB5_9PROT (Uncharacterized protein (Fragment) n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_68_19 TaxID=1797504 RepID=A0A1F4CVB5_9PROT)

HSP 1 Score: 67.0 bits (162), Expect = 3.030e-11
Identity = 40/95 (42.11%), Postives = 59/95 (62.11%), Query Frame = 0
Query:   82 VITGGVLHLSAVAAKDLGADAAGQARQVLEQIDAVLQAKGASRSRIISATVFVRNAQTDGGAVAAEWELWLGGENHPAFACVEAGTAVPAQLVTI 176
            V+ G  ++L+ V AK+L  D  GQAR++L +ID +L   G+S+SR++SAT++V + +     V   W  W+  +N PA ACVEA  A P  LV I
Sbjct:   16 VVHGDTVYLAGVVAKNLDNDIKGQAREILAEIDRLLAKCGSSKSRLLSATIWVTDIRNR-APVNEVWSAWVDPKNLPARACVEARLADPRSLVEI 109          
BLAST of jgi.p|Trimin1|348089 vs. uniprot
Match: UPI00200B8FAC (RidA family protein n=1 Tax=Roseomonas sp. NAR14 TaxID=2937791 RepID=UPI00200B8FAC)

HSP 1 Score: 67.0 bits (162), Expect = 3.590e-11
Identity = 37/93 (39.78%), Postives = 58/93 (62.37%), Query Frame = 0
Query:   88 LHLSAVAAKDLGADAAGQARQVLEQIDAVLQAKGASRSRIISATVFVRNAQTDGGAVAAEWELWLGGENHPAFACVEAGTAVPAQLVTIQVTA 180
            ++L+ + A DL  D +GQ +QVL++IDA L+A G   +R++SA +++++ + D  A+   W  WL     PA ACV+A  A P  LV I +TA
Sbjct:   23 VYLAGMTADDLSQDVSGQTKQVLDKIDAALEANGTDNTRLLSAQIWLKDIR-DRDAMNKLWTAWLPAGGAPARACVQANMADPRHLVEIMITA 114          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348089 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z4L3_9STRA3.150e-114100.00Peroxisomal membrane protein PEX14 n=1 Tax=Tribone... [more]
D8LIY3_ECTSI1.440e-1735.48Peroxisomal membrane protein PEX14 n=1 Tax=Ectocar... [more]
A0A3F2UCK5_9HYPH5.950e-1343.14RidA family protein n=1 Tax=Mesorhizobium sp. YM1C... [more]
A0A7U7ELF3_9PSED6.260e-1339.81Aminoacrylate peracid reductase RutC n=1 Tax=Pseud... [more]
A0A5Q2QE15_9GAMM2.260e-1241.23RidA family protein n=1 Tax=Litoricola lipolytica ... [more]
A0A4P6F7M9_9MICO3.100e-1240.78RidA family protein n=1 Tax=Agromyces protaetiae T... [more]
A0A1H0GGX4_9HYPH8.820e-1242.48Enamine deaminase RidA, house cleaning of reactive... [more]
UPI0010C117601.820e-1143.01RidA family protein n=5 Tax=Roseomonas TaxID=12521... [more]
A0A1F4CVB5_9PROT3.030e-1142.11Uncharacterized protein (Fragment) n=1 Tax=Betapro... [more]
UPI00200B8FAC3.590e-1139.78RidA family protein n=1 Tax=Roseomonas sp. NAR14 T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006785Peroxisome membrane anchor protein Pex14p, N-terminalPFAMPF04695Pex14_Ncoord: 4..48
e-value: 1.2E-15
score: 56.9
IPR006175YjgF/YER057c/UK114 familyPFAMPF01042Ribonuc_L-PSPcoord: 79..181
e-value: 9.6E-12
score: 44.9
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 1..60
e-value: 6.5E-21
score: 75.5
IPR035959RutC-like superfamilyGENE3D3.30.1330.40coord: 69..182
e-value: 9.3E-22
score: 79.1
IPR035959RutC-like superfamilySUPERFAMILY55298YjgF-likecoord: 79..181
IPR025655Peroxisomal membrane protein 14PANTHERPTHR23058PEROXISOMAL MEMBRANE PROTEIN PEX14coord: 2..75

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_19contigContig_19:1008341..1010112 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348089mRNA_5553Tribonema minus UTEX_B_3156 mRNAContig_19 1008271..1010252 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|348089|estExt_Genemark1.C_Ctg_190116 ID=Trimin1|348089|estExt_Genemark1.C_Ctg_190116|Name=jgi.p|Trimin1|348089|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=183bp
MSFREEMVARAVKFLLHPKVVDAPLSKKISFLEEKELTREEIDEALKRAE
SPESIGAAASTSKAKAQRETIQRFEHAGVQGVITGGVLHLSAVAAKDLGA
DAAGQARQVLEQIDAVLQAKGASRSRIISATVFVRNAQTDGGAVAAEWEL
WLGGENHPAFACVEAGTAVPAQLVTIQVTAAM*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006785Pex14_N
IPR006175YjgF/YER057c/UK114
IPR036388WH-like_DNA-bd_sf
IPR035959RutC-like_sf
IPR025655PEX14