Trimin1|348085|estExt_Genemark1.C_Ctg_190111 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|348085
Unique Name	Trimin1\|348085\|estExt_Genemark1.C_Ctg_190111
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	207

Homology

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BLAST of jgi.p|Trimin1|348085 vs. uniprot
Match: A0A835ZDC7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDC7_9STRA)

HSP 1 Score: 404 bits (1038), Expect = 2.100e-142
Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 0

Query:    1 MCHRSMQRDVQMSDEASSSRDLFRSSMHNTRQAVHDLVAEYRDDPEFNSIRKQMMEPFRNAARNSMLGFVGSGLAGLGLARYLAKPARMARYRPGPMGQFAIVAGAAIVGGRLIYMSSKPTAGVAQLIEGDDKLAAPICRAAASMKPCADDPECRKLMQRGGGRMYPMLSWYEACQQRSARLGGNAAGAAGPVAFSEGDGAPPLSH 206
            MCHRSMQRDVQMSDEASSSRDLFRSSMHNTRQAVHDLVAEYRDDPEFNSIRKQMMEPFRNAARNSMLGFVGSGLAGLGLARYLAKPARMARYRPGPMGQFAIVAGAAIVGGRLIYMSSKPTAGVAQLIEGDDKLAAPICRAAASMKPCADDPECRKLMQRGGGRMYPMLSWYEACQQRSARLGGNAAGAAGPVAFSEGDGAPPLSH
Sbjct:    1 MCHRSMQRDVQMSDEASSSRDLFRSSMHNTRQAVHDLVAEYRDDPEFNSIRKQMMEPFRNAARNSMLGFVGSGLAGLGLARYLAKPARMARYRPGPMGQFAIVAGAAIVGGRLIYMSSKPTAGVAQLIEGDDKLAAPICRAAASMKPCADDPECRKLMQRGGGRMYPMLSWYEACQQRSARLGGNAAGAAGPVAFSEGDGAPPLSH 206

[Close]

BLAST of jgi.p|Trimin1|348085 vs. uniprot
Match: A0A835ZB04_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB04_9STRA)

HSP 1 Score: 105 bits (261), Expect = 3.710e-25
Identity = 60/130 (46.15%), Postives = 84/130 (64.62%), Query Frame = 0

Query:   37 LVAEYRDDPEFNSIRKQMMEPFRNAARNSMLGFVGSGLAGLGLARYLAKPARMARYRPGPMGQFAIVAGAAIVGGRLIYMSSKPTAGVAQLIEGDDKLAAPICRAAASMKPCADDPECR---KLMQRGGG 163
            +  +YR   +F+ +  +MMEP R   R S++G+ GSGLAGLGLARYLA P+R  RYRPGP+GQ AI++GAA++GG ++   S P A + Q+I+ D ++   +C+AA  M PCA          L  RGGG
Sbjct:   14 IAHQYRGRTDFH-VTPEMMEPLRRTER-SLVGYAGSGLAGLGLARYLAHPSRAPRYRPGPVGQLAIISGAALIGGEIMAERSGPCA-ITQVIDSDKEMGGALCQAAERMGPCASGNNLSTICNLSGRGGG 140

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|348085 vs. uniprot

BLAST of jgi.p|Trimin1|348085 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A835ZDC7_9STRA	2.100e-142	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A835ZB04_9STRA	3.710e-25	46.15	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 11..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_19	contig	Contig_19:917724..918505 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|348085	mRNA_5541	Tribonema minus UTEX_B_3156	mRNA	Contig_19 917432..918574 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|348085|estExt_Genemark1.C_Ctg_190111 ID=Trimin1|348085|estExt_Genemark1.C_Ctg_190111|Name=jgi.p|Trimin1|348085|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=207bp
MCHRSMQRDVQMSDEASSSRDLFRSSMHNTRQAVHDLVAEYRDDPEFNSI
RKQMMEPFRNAARNSMLGFVGSGLAGLGLARYLAKPARMARYRPGPMGQF
AIVAGAAIVGGRLIYMSSKPTAGVAQLIEGDDKLAAPICRAAASMKPCAD
DPECRKLMQRGGGRMYPMLSWYEACQQRSARLGGNAAGAAGPVAFSEGDG
APPLSH*