Trimin1|348084|estExt_Genemark1.C_Ctg_190110 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|348084
Unique NameTrimin1|348084|estExt_Genemark1.C_Ctg_190110
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length412
Homology
BLAST of jgi.p|Trimin1|348084 vs. uniprot
Match: A0A835Z3H4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3H4_9STRA)

HSP 1 Score: 714 bits (1842), Expect = 4.480e-258
Identity = 411/411 (100.00%), Postives = 411/411 (100.00%), Query Frame = 0
Query:    1 MLVAGHYLCKRGRGSVTFSATYSSAQRAAVAATAAALGLVYSEDERGRAKVXXXXXXXXXXXXXXXXXXXXXXXXGDWGGGERRGSKGRRRDSEGENGSATVPHSALQGMESALDARTCKKLQQLAGTLPRERGGAYRVVCLRYQLGVCPNRPHDCTYAHFQANLHKIGRFKPLLDLVHAAEGSKKGPARVRNKPRSESLGEAVEANASAAAAEKGADTSGGGAAHRSRGSSVASQGEAETLLKFESLQVLELSNCSALEGVVGVECPSLLHLSVTGCRAFAAFDVDAHRVTXXXXXXXXXXXGWELSGKSLANVQVARLNGCRALPFKFFAALVDHCRHMRRLEICGAACEGGLTSSERVRQQYPGGKRDAMNSDHFSRVKSRAAPLRNLEKGRPRLDVVRTKNQLAARR 411
            MLVAGHYLCKRGRGSVTFSATYSSAQRAAVAATAAALGLVYSEDERGRAKVXXXXXXXXXXXXXXXXXXXXXXXXGDWGGGERRGSKGRRRDSEGENGSATVPHSALQGMESALDARTCKKLQQLAGTLPRERGGAYRVVCLRYQLGVCPNRPHDCTYAHFQANLHKIGRFKPLLDLVHAAEGSKKGPARVRNKPRSESLGEAVEANASAAAAEKGADTSGGGAAHRSRGSSVASQGEAETLLKFESLQVLELSNCSALEGVVGVECPSLLHLSVTGCRAFAAFDVDAHRVTXXXXXXXXXXXGWELSGKSLANVQVARLNGCRALPFKFFAALVDHCRHMRRLEICGAACEGGLTSSERVRQQYPGGKRDAMNSDHFSRVKSRAAPLRNLEKGRPRLDVVRTKNQLAARR
Sbjct:    1 MLVAGHYLCKRGRGSVTFSATYSSAQRAAVAATAAALGLVYSEDERGRAKVXXXXXXXXXXXXXXXXXXXXXXXXGDWGGGERRGSKGRRRDSEGENGSATVPHSALQGMESALDARTCKKLQQLAGTLPRERGGAYRVVCLRYQLGVCPNRPHDCTYAHFQANLHKIGRFKPLLDLVHAAEGSKKGPARVRNKPRSESLGEAVEANASAAAAEKGADTSGGGAAHRSRGSSVASQGEAETLLKFESLQVLELSNCSALEGVVGVECPSLLHLSVTGCRAFAAFDVDAHRVTXXXXXXXXXXXGWELSGKSLANVQVARLNGCRALPFKFFAALVDHCRHMRRLEICGAACEGGLTSSERVRQQYPGGKRDAMNSDHFSRVKSRAAPLRNLEKGRPRLDVVRTKNQLAARR 411          
BLAST of jgi.p|Trimin1|348084 vs. uniprot
Match: D7G8C1_ECTSI (Hypothetical leucine rich repeat zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8C1_ECTSI)

HSP 1 Score: 127 bits (318), Expect = 7.880e-28
Identity = 118/372 (31.72%), Postives = 169/372 (45.43%), Query Frame = 0
Query:  108 QGMESALDARTCKKLQQLAGTLPRERGGAY--RVVCLRYQLGVCPNRPHDCTYAHFQANLHKIGRFKPLLDLVHAAE-----------------------------GSKKGPARVRNKPRSESLGEAVEANAS---AAAAE--------------KGADTSGGGAAHRSR-GSSVASQGEAETLLKFESLQVLELSNCSALEGVVGVECPSLLHLSVTGCRAFAAFDVD-AHRVTXXXXXXXXXXXGWEL----------------SGKSLANVQVARLNGCRALPFKFFAALVDHCRHMRRLEICGAAC------EGGLTSSERVRQQYPGGKRDAMNSDHFSRVKSRA-APLRNLEKGRPRLDVVRTKNQ 406
            QG+E  +D +T  KL++LA  LPRE G     R  C+R+    CPN   DC++AH   +  K  +FKPL+   HA E                              S+    R R        G    ++A+   AAA                +G + +GG A   SR   S    G A  +  F++LQ LE+ +C  L+ + G+ CP+L    VT CR  ++  ++ A  ++            WEL                S  SLA ++V  LN CR L  KF A LVDH +H+RRLEI GAA        GG  SS + +++   GKRD ++   F+R+  +A A L+ L+KGRP+L VVRTK +
Sbjct: 1205 QGLEFRVDGKTRDKLERLAAALPREPGRKKMGRPSCIRFLQDKCPNSARDCSWAHLPMHPPKTLKFKPLV--THAQEPVSASSXXXXXXXXXXXXXXXXXXXXXXXXSRSRSPRSRRPDGGRCGGNGAGSSATVFEAAAGRXXXXXXXXXXXXXXRGFERAGGTAGFESRRDGSRGGDGSAPEVC-FKNLQFLEIHSCPGLKRLEGIRCPALAVARVTACRELSSLGLEEAFVLSDLDLAGCVRLESWELPPPAPPGGNAASSGVASSASLAELRVVVLNYCRGLQAKFLAKLVDHAKHLRRLEIYGAAAVVGPHPHGG--SSSKTKKEQTAGKRD-LSRVEFNRLAGKATAILKGLDKGRPKLVVVRTKKE 1570          
BLAST of jgi.p|Trimin1|348084 vs. uniprot
Match: A0A6H5JVX9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVX9_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 3.050e-17
Identity = 66/186 (35.48%), Postives = 97/186 (52.15%), Query Frame = 0
Query:  245 FESLQVLELSNCSALEGVVGVECPSLLHLSVTGCRAFAAFDVD-AHRVTXXXXXXXXXXXGWELS----------------GKSLANVQVARLNGCRALPFKFFAALVDHCRHMRRLEICGAAC------EGGLTSSERVRQQYPGGKRDAMNSDHFSRVKSRAAP-LRNLEKGRPRLDVVRTKNQ 406
            F++LQ LE+ +C  L+ + G+ CP+L    VT CR  +   ++ A  ++            WEL                   SLA ++V  LN CR L  KF A LVDH +H+RRLEI GAA        GG   S + +++   GKRD ++   F+R+ ++A   L+ L+KGRP+L VVRTK +
Sbjct:  988 FKNLQFLEIHSCPGLKRLEGIRCPALAVARVTACRELSTLGLEEAFVLSHLDLAGCVRLEPWELPPPXXXXXXXXXXXXXXAASLAELRVVVLNYCRGLQAKFLAKLVDHAKHLRRLEIYGAAAVVGPHPHGG--GSNKTKKEQTAGKRD-LSRVEFNRLATKATTILKGLDKGRPKLLVVRTKKE 1170          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348084 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835Z3H4_9STRA4.480e-258100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7G8C1_ECTSI7.880e-2831.72Hypothetical leucine rich repeat zinc finger prote... [more]
A0A6H5JVX9_9PHAE3.050e-1735.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10Ribonuclease Inhibitorcoord: 230..393
e-value: 2.5E-9
score: 38.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 211..231
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 77..97
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 186..205
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 65..110
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 241..349

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_19contigContig_19:913373..916595 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348084mRNA_5540Tribonema minus UTEX_B_3156 mRNAContig_19 913373..916642 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|348084|estExt_Genemark1.C_Ctg_190110 ID=Trimin1|348084|estExt_Genemark1.C_Ctg_190110|Name=jgi.p|Trimin1|348084|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=412bp
MLVAGHYLCKRGRGSVTFSATYSSAQRAAVAATAAALGLVYSEDERGRAK
VTAAAAASADGAAGGGGGGGGDGDGGDWGGGERRGSKGRRRDSEGENGSA
TVPHSALQGMESALDARTCKKLQQLAGTLPRERGGAYRVVCLRYQLGVCP
NRPHDCTYAHFQANLHKIGRFKPLLDLVHAAEGSKKGPARVRNKPRSESL
GEAVEANASAAAAEKGADTSGGGAAHRSRGSSVASQGEAETLLKFESLQV
LELSNCSALEGVVGVECPSLLHLSVTGCRAFAAFDVDAHRVTHLDLSNCP
AIAGWELSGKSLANVQVARLNGCRALPFKFFAALVDHCRHMRRLEICGAA
CEGGLTSSERVRQQYPGGKRDAMNSDHFSRVKSRAAPLRNLEKGRPRLDV
VRTKNQLAARR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf