Trimin1|348071|estExt_Genemark1.C_Ctg_190089 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|348071
Unique NameTrimin1|348071|estExt_Genemark1.C_Ctg_190089
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length812
Homology
BLAST of jgi.p|Trimin1|348071 vs. uniprot
Match: A0A835Z6C8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6C8_9STRA)

HSP 1 Score: 853 bits (2204), Expect = 3.510e-300
Identity = 491/491 (100.00%), Postives = 491/491 (100.00%), Query Frame = 0
Query:    1 MGGRRRALASLGLAAAAAAGVGAAESDWWDAGDNSWKPTARGIGRGTPPPPPQYNRGDDFDQQYSSPAAYEGAPPQYADFEDDWGDFAPSAPXXXXXXXXXXXXXXXXXRRPARFNDAGDFFEEEEDAEVEYEAPDMVVVYSQSAKGKAIVTVGSGLVGAVIGVAISESTVHKTPSMALAGLFLGLMLSIARGAFGDLLRALGLGAYLTVVRSASIGSKYPILPQLKAAMHMGPRRPFPPVPIGESLSRYRPVPGGPEFSTMKALLAMAFMGGMAGYFGSKPVPLLPEVLGALATAGCAAYATTLRTSAGDLARLGGMRFAALLGVVTGVDAEVRAWDKARVVGRLCFAKLAFXXXXXXXXXXXXXXXXXXXXXXQLAXXXXXXXVRGPSDKHRATADVWDKILGFLGAGHHLQVASVNRDWRALYCGAHHATTSVRAMSTSVGLLTWAFANGAPKHSKLLVWAAGEGRLDICECARAHGCRWDRAVCKAA 491
            MGGRRRALASLGLAAAAAAGVGAAESDWWDAGDNSWKPTARGIGRGTPPPPPQYNRGDDFDQQYSSPAAYEGAPPQYADFEDDWGDFAPSAPXXXXXXXXXXXXXXXXXRRPARFNDAGDFFEEEEDAEVEYEAPDMVVVYSQSAKGKAIVTVGSGLVGAVIGVAISESTVHKTPSMALAGLFLGLMLSIARGAFGDLLRALGLGAYLTVVRSASIGSKYPILPQLKAAMHMGPRRPFPPVPIGESLSRYRPVPGGPEFSTMKALLAMAFMGGMAGYFGSKPVPLLPEVLGALATAGCAAYATTLRTSAGDLARLGGMRFAALLGVVTGVDAEVRAWDKARVVGRLCFAKLAFXXXXXXXXXXXXXXXXXXXXXXQLAXXXXXXXVRGPSDKHRATADVWDKILGFLGAGHHLQVASVNRDWRALYCGAHHATTSVRAMSTSVGLLTWAFANGAPKHSKLLVWAAGEGRLDICECARAHGCRWDRAVCKAA
Sbjct:    1 MGGRRRALASLGLAAAAAAGVGAAESDWWDAGDNSWKPTARGIGRGTPPPPPQYNRGDDFDQQYSSPAAYEGAPPQYADFEDDWGDFAPSAPXXXXXXXXXXXXXXXXXRRPARFNDAGDFFEEEEDAEVEYEAPDMVVVYSQSAKGKAIVTVGSGLVGAVIGVAISESTVHKTPSMALAGLFLGLMLSIARGAFGDLLRALGLGAYLTVVRSASIGSKYPILPQLKAAMHMGPRRPFPPVPIGESLSRYRPVPGGPEFSTMKALLAMAFMGGMAGYFGSKPVPLLPEVLGALATAGCAAYATTLRTSAGDLARLGGMRFAALLGVVTGVDAEVRAWDKARVVGRLCFAKLAFXXXXXXXXXXXXXXXXXXXXXXQLAXXXXXXXVRGPSDKHRATADVWDKILGFLGAGHHLQVASVNRDWRALYCGAHHATTSVRAMSTSVGLLTWAFANGAPKHSKLLVWAAGEGRLDICECARAHGCRWDRAVCKAA 491          
BLAST of jgi.p|Trimin1|348071 vs. uniprot
Match: A0A6H5K822_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K822_9PHAE)

HSP 1 Score: 174 bits (441), Expect = 7.040e-43
Identity = 112/251 (44.62%), Postives = 154/251 (61.35%), Query Frame = 0
Query:  117 DAGDFFEEEEDAEVEYEAPDMVVVYSQSAKGKAIVTVGSGLVGAVIGVAISESTVHKTPSMALAGLFLGLMLSIARGAFGDLLRALGLGAYLTVVRSASIGSKYPILPQLKAAMHMGPRRPFPPVP----------IGESLSRYRPVPGG---PEFSTMKALLAMAFMGGMAGYFGSK-PVPLLPEVLGALATAGCAAYATTLRTSAGDLARLGGMRFAALLGVVTGVDAEVRAWDKARVVGRLCFAKLAF 353
            D  D F+EE+    E    D+V  Y+QS KG+ +++ G+ + GA +GV IS+ST+ +TP M+L GL +GL+LS+ARGAFGDL RALGL + L V RS  + ++YP LP  + A+ M PRRPFPP            I E      P+  G    EFS  K+LL++AF+GG AGY  S+ P   LP  + AL   G  AY  T++ + GDL RL GMR  A LG+V+ +D++V    KA+VVG +CF+K  F
Sbjct:  175 DEDDGFDEEDGVVRE----DLVQEYAQSFKGRLVLSGGASVAGAALGVIISKSTIQRTPVMSLVGLLVGLVLSVARGAFGDLFRALGLASVLAVSRSRRLSAEYPFLPYARRALVMLPRRPFPPAENPWKYKRADAIAELEDAGVPLDAGNLPAEFSMAKSLLSVAFLGGFAGYLVSQFPFVFLPTFMLALGGGGFLAYLATMKNARGDLTRLLGMRTVAFLGLVSEIDSDVALSAKAKVVGGICFSKAMF 421          
BLAST of jgi.p|Trimin1|348071 vs. uniprot
Match: D8LMQ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMQ8_ECTSI)

HSP 1 Score: 147 bits (371), Expect = 4.160e-36
Identity = 92/202 (45.54%), Postives = 123/202 (60.89%), Query Frame = 0
Query:  166 ISESTVHKTPSMALAGLFLGLMLSIARGAFGDLLRALGLGAYLTVVRSASIGSKYPILPQLKAAMHMGPRRPFPPVP----------IGESLSRYRPVPGG---PEFSTMKALLAMAFMGGMAGYFGSK-PVPLLPEVLGALATAGCAAYATTLRTSAGDLARLGGMRFAALLGVVTGVDAEVRAWDKARVVGRLCFAKLAF 353
            IS+ST+ +TP M+L GL +GL+LS+ARGAFGDL RALGL + L V RS  + ++YP LP  + A+ M PRRPFPP            I E      P+  G    EFS  K+LL++AF+GG AGY  S+ P   LP  + AL   G  AY  T + + GDL RL GMR  A LG+V+ ++++V    K +VVG +CF+K  F
Sbjct:    2 ISKSTIQRTPVMSLVGLLVGLVLSVARGAFGDLFRALGLASVLAVSRSRRLSAEYPFLPYARRALVMLPRRPFPPAENPWKYKRADAIAELEDAGVPLDAGNLPAEFSMAKSLLSVAFLGGFAGYLVSQFPFVFLPTFMLALGGGGFLAYLATTKNARGDLTRLLGMRTVAFLGLVSEINSDVALSAKGKVVGGICFSKAMF 203          
BLAST of jgi.p|Trimin1|348071 vs. uniprot
Match: A0A4D9CPT7_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CPT7_9STRA)

HSP 1 Score: 119 bits (297), Expect = 2.510e-24
Identity = 80/219 (36.53%), Postives = 112/219 (51.14%), Query Frame = 0
Query:  136 DMVVVYSQSAKGKAIVTVGSGLVGAVIGVAISESTVHKTPSMALAGLFLGLMLSIARGAFGDLLRALGLGAYLTVVRSASIGSKYPILPQLKAAMHMGPRRPFPPVPIGESLSRYRPVPGGPEFSTMKALLAMAFMGGMAGYFGSKPVPL--LPEVLGALATAGCAAYATTLRTSAGDLARLGGMRFAALLGVVTGVDAEVRAWDKARVVGRLCFAKLA 352
            D V +Y    +G+  VT+ +G+ G  +G+ +S S +H+  S AL        LS+ R  FGDL RALGL     V R A  G+ YP L QL+  + + PRRPFP  P+    +  R  P   EFS  + L  + F+G   GY  +  + L  LP  L ALA  G   Y  TLR   GD+AR  GM+  A+LG+V  ++ E+  W K   V  + +   A
Sbjct:  232 DPVDLYCARWQGRMAVTLAAGVAGTGLGLGLSASAIHRPASCALXXXXXXXFLSLLRNDFGDLFRALGLLLIYLVERQARTGTAYPALHQLRPLLRLAPRRPFP--PVENPWAYVRASPSDVEFSMTQTLAVLVFVGAFLGYLLAHFISLFFLPAWLLALAGGGLGGYTATLRDRGGDMARCLGMKLVAVLGLVRALEQELLVWRKLGKVFHISYGHAA 448          
BLAST of jgi.p|Trimin1|348071 vs. uniprot
Match: W7T8K0_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T8K0_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 6.030e-9
Identity = 43/106 (40.57%), Postives = 56/106 (52.83%), Query Frame = 0
Query:  136 DMVVVYSQSAKGKAIVTVGSGLVGAVIGVAISESTVHKTPSMALAGLFLGLMLSIARGAFGDLLRALGLGAYLTVVRSASIGSKYPILPQLKAAMHMGPRRPFPPV 241
            D V +Y    +G+  VT+ +G+ GA      S S +H+  S AL         S+ R  FGDL RALGL     V R  S G+ YP L QL+  + + PRRPFPPV
Sbjct:  200 DPVDLYCARWQGRMAVTLAAGVAGAXXXXXXSASAIHRPASCALXXXXXXXXXSLLRNDFGDLFRALGLLLIYLVERQVSTGTAYPALHQLRPLLRLAPRRPFPPV 305          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348071 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A835Z6C8_9STRA3.510e-300100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5K822_9PHAE7.040e-4344.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LMQ8_ECTSI4.160e-3645.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A4D9CPT7_9STRA2.510e-2436.53Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7T8K0_9STRA6.030e-940.57Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036770Ankyrin repeat-containing domain superfamilyGENE3D1.25.40.20coord: 619..808
e-value: 3.2E-8
score: 35.2
IPR036770Ankyrin repeat-containing domain superfamilySUPERFAMILY48403Ankyrin repeatcoord: 461..773
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 19..117
NoneNo IPR availablePANTHERPTHR46586ANKYRIN REPEAT-CONTAINING PROTEINcoord: 626..754
coord: 591..695
coord: 285..647
coord: 680..801

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_19contigContig_19:720863..730383 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348071mRNA_5520Tribonema minus UTEX_B_3156 mRNAContig_19 720863..730383 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|348071|estExt_Genemark1.C_Ctg_190089 ID=Trimin1|348071|estExt_Genemark1.C_Ctg_190089|Name=jgi.p|Trimin1|348071|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=812bp
MGGRRRALASLGLAAAAAAGVGAAESDWWDAGDNSWKPTARGIGRGTPPP
PPQYNRGDDFDQQYSSPAAYEGAPPQYADFEDDWGDFAPSAPPPPPPPAS
RRGRRQQQARRPARFNDAGDFFEEEEDAEVEYEAPDMVVVYSQSAKGKAI
VTVGSGLVGAVIGVAISESTVHKTPSMALAGLFLGLMLSIARGAFGDLLR
ALGLGAYLTVVRSASIGSKYPILPQLKAAMHMGPRRPFPPVPIGESLSRY
RPVPGGPEFSTMKALLAMAFMGGMAGYFGSKPVPLLPEVLGALATAGCAA
YATTLRTSAGDLARLGGMRFAALLGVVTGVDAEVRAWDKARVVGRLCFAK
LAFWDKKYQWRRPCFAMLAFWDKKYQLAFWDKKYQVRGPSDKHRATADVW
DKILGFLGAGHHLQVASVNRDWRALYCGAHHATTSVRAMSTSVGLLTWAF
ANGAPKHSKLLVWAAGEGRLDICECARAHGCRWDRAVCKAAAEHGRLEAL
QWARSHGCPWGKCTCAAAAGAGHLHILQWARANACDWDASTCAAAARGGH
LATLQWARAAGAPWGFRTPANAALGGHLDVLRYSHENNCPWNEAACSHAA
EEGHLEVLQWLRAHGCPWDESTTFQAARGGHLEVLRWARAEGCPWDAGTP
YAAAEGGHGAVLRWALASGCPFDASTCSNLALGGHLSLLQWARANAVPWN
ETTCAHAAAAGHLAVLQWAHRNGCPWDRQTCSSAAAGGHVEVLRWAREQG
APWNASVCKCAAKADHLEVLQWARANGCAWDAAVCAALAATPEVRRWILA
NADADADAAAA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036770Ankyrin_rpt-contain_sf