Trimin1|348003|estExt_Genemark1.C_Ctg_180030 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|348003
Unique NameTrimin1|348003|estExt_Genemark1.C_Ctg_180030
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length894
Homology
BLAST of jgi.p|Trimin1|348003 vs. uniprot
Match: A0A835Z7T9_9STRA (Armadillo-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7T9_9STRA)

HSP 1 Score: 1392 bits (3603), Expect = 0.000e+0
Identity = 893/893 (100.00%), Postives = 893/893 (100.00%), Query Frame = 0
Query:    1 MGKDRSSGGXXXSGGDKRGFKGKTXXXXXXXXXXXXXXXKTDGFNKGGSPGAGAKGGKGGSEIKKKPWAGNXXXXXXXXXXXXXXXXXXGDAKPGGKPYKPTGHNKPLVGKKPWKPSNKGDSSKPGGFKRKAPEGADKEAAEATGSSKRRGDLKKERQAHRPDNDTVVRAKELWNKLRERKITEEQRAPLVRELMQLLRGKVYKISMKHDASRVVQSAVTFGSNTDRDLILTELEGHLVELSQLQYAHFIVLKLLQRARGAEEQRRVTKDLRGHVAKLATHSIGARVIQQAMDMLPSARAAQLRAELYGPEHALFADMAFDKAPRNLKQVIALRPDRRAIVLEGVKRTLGKIAQKGLLSFAFAHSLLWEYMSEVNVNSDGGAAIADMVPTVIDGYMALLSTRDGSRAAALCAAYGSAKDRKRMMKGFKGFVGTSLMHRDAYLAVLRLVASVDDTVTCQKSVLAELLVPLPRPVAAAVTGVTASGAAVKPGEGVTAEAWVPKGVARSSGTGEAVVEDDEDGGEFDGMTDEFDGXXXXXXXXXXXXXXXXXXXXXQQDEAEESDIEAGEDEAAAEEETTDAVGAQGDADTSAQAALXXXXXXXXXXXXXXXXXXAPALLPVSLHRNGCKLLLYLAAPDATKYLDPEERHLLEPAMVPVAQGEGEAPVLVCASKKDPEVRRQELLAFLKAPLQSLCQEHTAELMRSKFAGANVLLEVTKNLRTPDLVAAIAAAAVAVPEEGHLAMQEDPAGHLFMKQLLLWEGEQXXXXXXXXAGWFADALLKRLQAGDGGGLRGWAGSNRGAFVLAALAGVPSAGAAVRKALKGRTPPAEGGKGAEVLAAALASDAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTKVRGRKRQ 893
            MGKDRSSGGXXXSGGDKRGFKGKTXXXXXXXXXXXXXXXKTDGFNKGGSPGAGAKGGKGGSEIKKKPWAGNXXXXXXXXXXXXXXXXXXGDAKPGGKPYKPTGHNKPLVGKKPWKPSNKGDSSKPGGFKRKAPEGADKEAAEATGSSKRRGDLKKERQAHRPDNDTVVRAKELWNKLRERKITEEQRAPLVRELMQLLRGKVYKISMKHDASRVVQSAVTFGSNTDRDLILTELEGHLVELSQLQYAHFIVLKLLQRARGAEEQRRVTKDLRGHVAKLATHSIGARVIQQAMDMLPSARAAQLRAELYGPEHALFADMAFDKAPRNLKQVIALRPDRRAIVLEGVKRTLGKIAQKGLLSFAFAHSLLWEYMSEVNVNSDGGAAIADMVPTVIDGYMALLSTRDGSRAAALCAAYGSAKDRKRMMKGFKGFVGTSLMHRDAYLAVLRLVASVDDTVTCQKSVLAELLVPLPRPVAAAVTGVTASGAAVKPGEGVTAEAWVPKGVARSSGTGEAVVEDDEDGGEFDGMTDEFDGXXXXXXXXXXXXXXXXXXXXXQQDEAEESDIEAGEDEAAAEEETTDAVGAQGDADTSAQAALXXXXXXXXXXXXXXXXXXAPALLPVSLHRNGCKLLLYLAAPDATKYLDPEERHLLEPAMVPVAQGEGEAPVLVCASKKDPEVRRQELLAFLKAPLQSLCQEHTAELMRSKFAGANVLLEVTKNLRTPDLVAAIAAAAVAVPEEGHLAMQEDPAGHLFMKQLLLWEGEQXXXXXXXXAGWFADALLKRLQAGDGGGLRGWAGSNRGAFVLAALAGVPSAGAAVRKALKGRTPPAEGGKGAEVLAAALASDAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTKVRGRKRQ
Sbjct:    1 MGKDRSSGGXXXSGGDKRGFKGKTXXXXXXXXXXXXXXXKTDGFNKGGSPGAGAKGGKGGSEIKKKPWAGNXXXXXXXXXXXXXXXXXXGDAKPGGKPYKPTGHNKPLVGKKPWKPSNKGDSSKPGGFKRKAPEGADKEAAEATGSSKRRGDLKKERQAHRPDNDTVVRAKELWNKLRERKITEEQRAPLVRELMQLLRGKVYKISMKHDASRVVQSAVTFGSNTDRDLILTELEGHLVELSQLQYAHFIVLKLLQRARGAEEQRRVTKDLRGHVAKLATHSIGARVIQQAMDMLPSARAAQLRAELYGPEHALFADMAFDKAPRNLKQVIALRPDRRAIVLEGVKRTLGKIAQKGLLSFAFAHSLLWEYMSEVNVNSDGGAAIADMVPTVIDGYMALLSTRDGSRAAALCAAYGSAKDRKRMMKGFKGFVGTSLMHRDAYLAVLRLVASVDDTVTCQKSVLAELLVPLPRPVAAAVTGVTASGAAVKPGEGVTAEAWVPKGVARSSGTGEAVVEDDEDGGEFDGMTDEFDGXXXXXXXXXXXXXXXXXXXXXQQDEAEESDIEAGEDEAAAEEETTDAVGAQGDADTSAQAALXXXXXXXXXXXXXXXXXXAPALLPVSLHRNGCKLLLYLAAPDATKYLDPEERHLLEPAMVPVAQGEGEAPVLVCASKKDPEVRRQELLAFLKAPLQSLCQEHTAELMRSKFAGANVLLEVTKNLRTPDLVAAIAAAAVAVPEEGHLAMQEDPAGHLFMKQLLLWEGEQXXXXXXXXAGWFADALLKRLQAGDGGGLRGWAGSNRGAFVLAALAGVPSAGAAVRKALKGRTPPAEGGKGAEVLAAALASDAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTKVRGRKRQ 893          
BLAST of jgi.p|Trimin1|348003 vs. uniprot
Match: A0A6H5K7W3_9PHAE (PUM-HD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7W3_9PHAE)

HSP 1 Score: 480 bits (1236), Expect = 4.470e-153
Identity = 343/690 (49.71%), Postives = 420/690 (60.87%), Query Frame = 0
Query:  161 RPDNDTVVRAKELWNKLRERKITEEQRAPLVRELMQLLRGKVYKISMKHDASRVVQSAVTFGSNTDRDLILTELEGHLVELSQLQYAHFIVLKLLQRARGAEEQRRVTKDLRGHVAKLATHSIGARVIQQAMDMLPSARAAQLRAELYGPEHALFADMAFDKAPRNLKQVIALRPDRRAIVLEGVKRTLGKIAQKGLLSFAFAHSLLWEYMSEVNVNSDGGAAIADMVPTVIDGYMALLSTRDGSRAAALCAAYGSAKDRKRMMKGFKGFVGTSLMHRDAYLAVLRLVASVDDTVTCQKSVLAELLVPLPRPVAAAVTGVTASGAAVKPGEGVTAEAWVPKGVARSSGTGEAVVEDDEDGGEFDGMTDEFDGXXXXXXXXXXXXXXXXXXXXXQQDEAEESDIEAGEDEAAAEEETTDAVGAQGDADTSAQAALXXXXXXXXXXXXXXXXXXAPALLP---VSLHRNGCKLLLYLAAPDATKYLDPEERHLLEPAMVPV--------------------AQGEGEAPVLVCASKKDPEVRRQELLAFLKAPLQSLCQEHTAELMRSKFAGANVLLEVTKNLRTPDLVAAIAAAAVAVPEEGHLAMQEDPAGHLFMKQLLLWEGEQXXXXXXXXAGW-------FADALLKRLQAGDGGGLRGWAGSNRGAFVLAALAGVPSAGAAVRKAL 820
            RP  DTV R+KE+WNKLRERK+  E+RA LV+EL+QL++GKV  I++KHDASRVVQ+A+ FG+  +R  ILTE+EGH+ +LSQL YAHFIVL+L +  +GAEEQ+RV K  RG   KLATH+IGARV+Q A+D LP A AA +++E YG E+ALF D   D  P +LK V+  RPDRRA+V+  V   + K+  KGL+ F FAH LLWEYM E          + ++VP ++D Y+ LLSTR GS AAA+CAA+G AK+RKRMM+  KG+V  SLMHRDAY+AV+RLV SVDDTVTCQK++LAELL P  + V    T   A  +  K G+G +AE WVP+G     G  +  V    DG    GM  E + XXXXXXXXXXXXXXXXXXXXX                                         XXXX       XXXXX  A   LP   V  H+NGCKLLL L APD T YL PEE  LL+P MVP                     A GEG    LV +S+K+  VRR+ELLAFL+ PL+  C  H   LMRSK AG+ VLLE  + + TP +VAA+  AA   P  G L M EDP+ HLFMKQLL  E E         +         FADALL++     GG L  W  +NRGAFV+ ALA VPS GAAVR+ L
Sbjct:  145 RPQFDTVKRSKEIWNKLRERKVPPEERAKLVQELLQLIKGKVMDIALKHDASRVVQTALQFGNQEERLSILTEIEGHIAQLSQLTYAHFIVLRLFKEIKGAEEQKRVAKTFRGQTVKLATHAIGARVVQTALDSLPVASAALIKSEFYGKEYALFTD---DNQPHSLKAVLKARPDRRAVVMAHVNGVIAKLLSKGLMKFEFAHDLLWEYMQEATP-----VQMQELVPQLVDSYILLLSTRPGSMAAAMCAAHGGAKERKRMMRALKGYVAASLMHRDAYIAVIRLVESVDDTVTCQKAILAELLKP--KEVTPKTT--PAGNSVPKAGKGTSAEEWVPRGTTAPKGNSDGGVAAAGDG--VTGMDVEGEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------------------XXXXXXXXXXVEGDAMEXXXXXAAASPRLPLVGVMCHKNGCKLLLRLLAPDHTGYLHPEELELLKPTMVPSPAAXXXXXXXXXXXXXXXPKAGGEGTEVPLVPSSRKEASVRRRELLAFLREPLREACATHAPMLMRSKCAGSVVLLEAIRAIGTPQVVAAVVKAACGKPRVGKLPMHEDPSAHLFMKQLLEREAEAQKAKDGADSAADTSDTLSFADALLEKA----GGQLSAWISTNRGAFVVTALAEVPSTGAAVREEL 793          
BLAST of jgi.p|Trimin1|348003 vs. uniprot
Match: D7FHP3_ECTSI (PUM-HD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHP3_ECTSI)

HSP 1 Score: 421 bits (1082), Expect = 9.100e-131
Identity = 310/700 (44.29%), Postives = 389/700 (55.57%), Query Frame = 0
Query:  161 RPDNDTVVRAKELWNKLRERKITEEQRAPLVRELMQLLRGKVYKISMKHDASRVVQSAVTFGSNTDRDLILTELEGHLVELSQLQYAHFIVLKLLQRARGAEEQRRVTKDLRGHVAKLATHSIGARVIQQAMDMLPSARAAQLRAELYGPEHALFADMAFDKAPRNLKQVIALRPDRRAIVLEGVKRTLGKIAQKGLLSFAFAHSLLWEYMSEVNVNSDGGAAIADMVPTVIDGYMALLSTRDGSRAAALCAAYGSAKDRKRMMKGFKGFVGTSLMHRDAYLAVLRLVASVDDTVTCQKSVLAELLVPLPRPVAAAVTGVTASGAAVKPGEGVTAEAWVPKGVARSSGTGEAVVEDDEDGGEFDGMTDEFDGXXXXXXXXXXXXXXXXXXXXXQQDEAEESDIEAGEDEAAAEEETTDAVGAQGDADTSAQAALXXXXXXXXXXXXXXXXXXAPALLP---VSLHRNGCKLLLYLAAPDAT-----KYLDPEERHLLEPAMVPV---------------------AQGEGEAPVLVCASKKDPEVRRQELLAFLKAPLQSLCQEHTAELMRSKFAGANVLLEVTKNLRTPDLVAAIAAAAVAVPEEGHLAMQEDPAGHLFMKQLLLWEGEQXXXXXXXXAGW-------FADALLKRLQAGDGGGLRGWAGSNRGAFVLAALAGVPSAGAAVRKALKGRT 824
            RP  +TV R+KE+WNKLRERK+  E+RA LV+EL+QL++GKV  I++KHDASRVVQ+A+ FG+  +R  ILTE+EGH+ +LSQL YAHFIVL+L +  +GAEEQ+RV K  RG   KLATH+IGARV+Q A+D LP A AA +++E YG E+ALF D   D  P +LK V+  RPDRRA+V+  V   + K+  KGL+ F FAH LLWEYM E          + ++VP ++D YM LLSTR GS AAA+CAA+G AK+RKRMM+  KG+V  SL H D       LVA         K+  A  +VP                   K G+G +AE WVP+G     G  E  V    DG    GM                                   D+E          E  +                XXXXXXXXXXXXXXXXXX P  LP   V  H NGCKLLL L APD T     +YL PEE  LL+P MVP                      A G+G    LV +S+K+  VRR+ELLA+L+ PL+  C  +   LMRSK AG+ VLLE  + + TP++VAA+  AA A    G L M EDP+ HLFMKQLL  E E         +         FADALL++     GG L  W+ +NRG FV+ ALA VPS GAAVR+ L  +T
Sbjct:  146 RPQFNTVKRSKEIWNKLRERKVPPEERAKLVQELLQLIKGKVMDIALKHDASRVVQTALQFGNQEERLSILTEIEGHIAQLSQLTYAHFIVLRLFKEIKGAEEQKRVAKTFRGQTVKLATHAIGARVVQTALDSLPVASAALIKSEFYGKEYALFTD---DNQPHSLKAVLKARPDRRAVVMAHVNGVITKLLSKGLMKFEFAHDLLWEYMQEATP-----VQMQELVPQLVDSYMLLLSTRPGSMAAAMCAAHGGAKERKRMMRALKGYVAASLTHSDVVKQADHLVAP--------KTTAAGNIVP-------------------KAGKGTSAEEWVPRGTTAPKGNPERGVAAAGDG--VTGM-----------------------------------DVEG---------EEKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPGLPLVYVMGHTNGCKLLLRLLAPDRTGYAFFRYLHPEELELLKPTMVPSPAAAXXXXXXXXXXXXXXXTKAGGQGTEVPLVPSSRKEASVRRRELLAYLREPLREACATYAPMLMRSKCAGSVVLLEAIRAIGTPEIVAAVVEAACAKSHVGKLPMHEDPSAHLFMKQLLEREAEAQKAKGGADSAAATSDTPSFADALLEKA----GGQLSSWSSTNRGGFVVTALAEVPSTGAAVREELGTKT 760          
BLAST of jgi.p|Trimin1|348003 vs. uniprot
Match: A0A7S2FGZ7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FGZ7_9STRA)

HSP 1 Score: 262 bits (669), Expect = 1.190e-72
Identity = 245/717 (34.17%), Postives = 348/717 (48.54%), Query Frame = 0
Query:  126 GGFKRKAPEGADKEAAEATGSSKRRGDLKKERQAHRPDNDTVVRAKELWNKLRERKITEEQRAPLVRELMQLLRGKVYKISMKHDASRVVQSAVTFGSNTDRDLILTELEGHLVELSQLQYAHFIVLKLLQRA-RGAEEQRRVTKDLRGHVAKLATHSIGARVIQQAMDMLPSARAAQLRAELYGPEHALFADMAFDKAP-------RN--LKQVIALRPDRRAIVLEGVKRTLGKIAQKGLLSFAFAHSLLWEYMSEVNVNSDGGAAIADMVPTVIDGYMALLSTRDGSRAAALCAAYGSAKDRKRMMKGFKGFVGTSLMHRDAYLAVLRLVASVDDTVTCQKSVLAELLVPLPRPVAAAVTGVTASGAAVKPGEGVTAEAWVPKGVARSSGTGEAVVEDDEDGGEFDGMTDEFDGXXXXXXXXXXXXXXXXXXXXXQQDEAEESDIEAGEDEAAAEEETTDAVGAQGDADTSAQAALXXXXXXXXXXXXXXXXXXAPALLPVSLHRNGCKLLLYLAAPDATKYLDPEERHLLEPAMVPVAQGEGEAPVLVCASKKDPEVRRQELLAFLKAPLQSLCQEHTAELMRSKFAGANVLLEVTKNLRTPDLVAAIAAAAV----AVPEEGHLA-MQEDPAGHLFMKQLLLWE-GEQXXXXXXXXAGWFAD----ALLKRLQAGDGGGLRGWAG-SNRGAFVLAALAGVPSAGAAVRKALK 821
            GG K++A   +  EAA    + KR   L+ +RQ+ R    TV   K +WN+LR +     +R  LV +L + L+G   ++++KHDASR+VQS + FG++  R  I+ E+   LVELS+  YAHF+V+KLL  A R  + Q+++ K LRG++  +AT ++ AR+++ A+  L +A    LR ELYG E+ +F D A  K P       RN  +  ++AL+P  +  +LEG+    GK  +KGLL+F + H LL E++   +      A +A+++P++++  + LLSTR G+R          AKDR++ +K  KG     L HRDAYLAVLR+V  +DDTV  Q+S+LAEL            T  T+ G   K     + +A   K    S G G     DD D                                                          D+  A GD   SA                         LL V+LH NG K+LL L AP   KYLDP +   L      VA+G          SKK PE RR ELLA+L+APL +LC+E+ A L+ S   G+N+LLE+  ++  PD VA +AAA      +  E+G  A + +     LF+K+ L  E G Q         G   D    +L + L     G L  W   SNRGAFV+ AL  VP+  AAVRK LK
Sbjct:   47 GGAKKRA---SPTEAAGGPANKKRA--LRFDRQSGRKHYSTVTDGKVVWNELRAKSCDPARRTTLVNDLHKALKGNYPEVALKHDASRLVQSVLEFGTSDQRLDIMGEVAPRLVELSRSTYAHFVVVKLLDLADRDPKLQQQLHKALRGNIRMMATSAVAARIVELALGNLKNA--FTLRLELYGKEYGVFTDEALSKTPAYDAKGQRNSIVAAILALKPQSKPGLLEGLAVLCGKFVKKGLLAFEYVHELLDEFVGHCDE-----AQMAELLPSILNNALVLLSTRPGTRVVVAALGLSIAKDRRKFLKALKGHGVQLLTHRDAYLAVLRIVDVMDDTVALQRSLLAEL-----------TTRATSDG---KISANPSLDADGGKAALASMGKGTQPNTDDVD--------------------------------------------------------DDDSCPAAGDTTASAGPM---------------------PLLDVALHTNGSKMLLRLLAPTKEKYLDPWDITALSGG---VAEG---------TSKKAPETRRGELLAYLQAPLLALCEENPATLITS-IPGSNILLEIFASM--PDDVATLAAAVAKCVCSKAEDGGTAPLFDQKVVQLFLKRALQLEIGGQSVEGRADGEGERHDTHPSSLARALVETASGELSDWCTQSNRGAFVVEALLKVPAVSAAVRKELK 645          
BLAST of jgi.p|Trimin1|348003 vs. uniprot
Match: A0A7S4QEX1_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QEX1_9STRA)

HSP 1 Score: 247 bits (630), Expect = 6.080e-68
Identity = 151/342 (44.15%), Postives = 207/342 (60.53%), Query Frame = 0
Query:  129 KRKAPEGADKEAAEATGSSKRRGDLKKERQAHRPDNDTVVRAKELWNKLRERKITEEQRAPLVRELMQLLRGKVYKISMKHDASRVVQSAVTFGSNTDRDLILTELEGHLVELSQLQYAHFIVLKLLQRA-RGAEEQRRVTKDLRGHVAKLATHSIGARVIQQAMDMLPSARAAQLRAELYGPEHALFADMAFD---KAPRNLKQVI-ALRPDRRAIVLEGVKRTLGKIAQKGLLSFAFAHSLLWEYMSEVNVNSDGGAAIADMVPTVIDGYMALLSTRDGSRAAALCAAYGSAKDRKRMMKGFKGFVGTSLMHRDAYLAVLRLVASVDDTVTCQKSVLAEL 465
            KRK PEG + E  +++   KR   +K+ERQ+HR   D VV AK +WNKLR R  T+E+ + +   LM LLRGK+ +++++HDASRVVQ+AV FG+   R  I  EL   + EL++ QYAHF+VLKL++   R  E  R + K L+GH++KLA H++GARV++      P      L+ E+YGP+  LF D A      A   L+ V     P ++   LE V   L K   KGL  F +  SL  EY+     N      I  + P+V+D  + +LSTR G+R  A CAAYG+ KDRK +M+  KG+  +SL+HRDAY+AVLRL   VDDTVT  K+VL EL
Sbjct:   10 KRKQPEGGNNEKEQSSTRQKRA--MKQERQSHRRHADAVVEAKSIWNKLRLRTNTKEETSAMADNLMGLLRGKMVEVALQHDASRVVQAAVQFGNEKQRREIAKELGSKISELAKSQYAHFVVLKLIKYCVRDGEAVRLIVKSLKGHISKLAVHAVGARVVELLFSTFPPKSTTLLKQEMYGPQFTLFTDGALSGGTAASPTLQSVFKTATPSQKKSALEHVHGLLQKGIDKGLFGFTYYQSLFCEYVIAATPND-----IRSIAPSVVDHSIHMLSTRAGARVVAECAAYGTVKDRKNIMRSLKGYTRSSLLHRDAYIAVLRLADVVDDTVTLDKNVLVEL 344          
BLAST of jgi.p|Trimin1|348003 vs. uniprot
Match: A0A7R9U7V4_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U7V4_9STRA)

HSP 1 Score: 226 bits (577), Expect = 4.860e-60
Identity = 212/687 (30.86%), Postives = 303/687 (44.10%), Query Frame = 0
Query:  167 VVRAKELWNKLRERKITEEQRAPLVRELMQLLRGKVYKISMKHDASRVVQSAVTFGSNTDRDLILTELEGHLVELSQLQYAHFIVLKLLQ---RARGAEEQRRVTKDLRGHVAKLATHSIGARVIQQAMDMLPSARAAQLRAELYGPEHALFADMAFDKAPRNLKQVIALRPDRRAIVLEGVKRTLGKIAQKGLLSFAFAHSLLWEYMSEVNVNSDGGAAIADMVPTVIDGYMALLSTRDGSRAAALCAAYGSAKDRKRMMKGFKGFVGTSLMHRDAYLAVLRLVASVDDTVTCQKSVLAELLVPLPRPVAAAVTGVTASGAAVKPGEGVTAEAWVPKGVARSSGTGEAVVEDDEDGGEFDGMTDEFDGXXXXXXXXXXXXXXXXXXXXXQQDEAEESDIEAGEDEAAAEEETTDAVGAQGDADTSAQAALXXXXXXXXXXXXXXXXXXAPALLPVSLHRNGCKLLLYLAAPDATKYL-DPEERHLLEPAMVP---VAQGEG------EAPVLVCASKKDPEVRRQELLAFLKAPLQSLCQEHTAELMRSKFAGANVLLEVTKNLRTPDLVAAIAAAAVAVPE------------EGHLAMQEDPAGHLFMKQLLLWEGE-----------------QXXXXXXXXAGWFADALLKRLQAGDGGGLRGWAGSNRGAFVLAALAGVPS 811
            V R   LWN+LR+R+++ E R  LV E+  L+RGK   +S+KHD SRVVQ+ V+FG+    D +L E+E  + +L    YAHF+V+KLL+   + R  + +RR+ K L GH+ +L  HS+GARV++ A++ LP   A +L  E YG EH L A     +    L  ++ LRPDRR  +L  V   L K+  KGL  F F   LL EY+        G A IA +VP++ +  +ALL +R+GS+AAA+ AAY  A++R++M+K  KG V + + HRDAY+ +L+LV+  DDTV+ +K++LAE+                      K  E  TA             TGE                                                         E AAE  T   + +Q                                  P +L        L+L AP   +Y  D   + L++P+M+P   V  G G      +    V  SKK PE R +E+LAFL+  L  L  EH A++M     G  +L E+ K   + +L A I      +PE            EG L   E P  HL +K LLL E E                 +        AG  +D LL++  +            NRGAFV+ AL+ V S
Sbjct:   60 VSRLLRLWNQLRDRQVSSEDRRKLVNEVASLMRGKYAAMSLKHDVSRVVQAVVSFGTAEQVDEVLVEVEPRIFDLCVSPYAHFLVIKLLKSVAQPRRRDSRRRMVKLLSGHMLRLGVHSVGARVVETALEELPKPDARRLNREFYGREH-LLATGGDAEGSHRLDGLLKLRPDRRETILTRVWGLLSKMIDKGLCQFVFVQELLCEYLE-----CAGPAQIAKVVPSLAEHAVALLVSRNGSKAAAMLAAYSGARERRKMIKALKGHVKSCIFHRDAYMFLLKLVSVTDDTVSVKKNLLAEIF--------------------AKEDEEFTA-------------TGE---------------------------------------------------------EKAAEHTTEMLMTSQ----------------------------------PTTL------FFLWLLAPSTNRYFHDDAVKKLMQPSMLPPEGVTVGLGTPLEEVDMSSWVNTSKKTPEQRNREVLAFLRGHLVGLAAEH-AQVMLYNAHGGRLLYEIAKRWPSENLHAKILDEMTKMPEQRGAEQERNEDAEGDLPAWEHPKAHLILKWLLLAEAEDASANPAGDEEGEDESHEAPSLAKAFAGQMSDELLEQYLS-----------CNRGAFVIEALSKVAS 598          
BLAST of jgi.p|Trimin1|348003 vs. uniprot
Match: B5YP90_THAPS (RNA-binding protein of the pumilio family n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YP90_THAPS)

HSP 1 Score: 220 bits (561), Expect = 9.030e-58
Identity = 143/353 (40.51%), Postives = 205/353 (58.07%), Query Frame = 0
Query:  143 ATGSSKRRGDLKKERQAHRPDNDTVVRAKELWNKLRERKITEEQRAPLVRELMQLLRGKVYKISMKHDASRVVQSAVTFGSNTDRDLILTEL-------------EGH----LVELSQLQYAHFIVLKLLQR-ARGAEEQRRVTKDLRGHVAKLATHSIGARVIQQAMDMLPSARAAQLRAELYGPEHALFADM-----------AFDKAPRNLKQVIALRPDRRAIVLEGVKRTLGKIAQKGLLSFAFAHSLLWEYMSEVNVNSDGGAAIAD-MVPTVIDGYMALLSTRDGSRAAALCAAYGSAKDRKRMMKGFKGFVGTSLMHRDAYLAVLRLVASVDDTVTCQKSVLAEL 465
            AT S+K+R  LK ERQ+HR    TV  AKE+WN+LR +  T +Q + L  EL  L  GK+ +++M+HDASR+VQ+ + FG+  +R   + EL             +GH    L EL ++QYAHF+VLK+++  AR  +  + + K LR  + KLA HS+G+RV++      PS   A L+ ELYGP++ALFA             +       L   I   PD+    L  ++  L K   K L  FA+ HSLL++Y+S  + N      I D + P + +  + L+STR G++    CAAYGS KDRK+M+K FKG+  +SL+HRDAYLA+LR+V  +DDTV   K +LAEL
Sbjct:   44 ATPSNKKRA-LKAERQSHRKHATTVRTAKEIWNELRIKTNTSDQNSKLATELYGLFEGKMMEVAMQHDASRMVQAVIQFGNKNERGETVRELCGVSGGAVQKEESKGHGTVNLAELCKIQYAHFVVLKMIKYCARDEDSVKLIVKSLRKQMTKLAVHSVGSRVVELLFATFPSKATAPLKLELYGPQYALFATSNPTPTDGKSKSSISPTLPTLASFIETNPDKLESTLTHLQTLLQKGLDKHLTGFAYFHSLLFDYVSIASPND-----IRDFLTPALAEHSLHLISTRAGTKVVCECAAYGSVKDRKKMLKCFKGYTRSSLLHRDAYLAILRMVDVMDDTVLVNKMLLAEL 390          
BLAST of jgi.p|Trimin1|348003 vs. uniprot
Match: D0MZX1_PHYIT (PUM-HD domain-containing protein n=16 Tax=Phytophthora TaxID=4783 RepID=D0MZX1_PHYIT)

HSP 1 Score: 214 bits (546), Expect = 1.530e-56
Identity = 127/310 (40.97%), Postives = 186/310 (60.00%), Query Frame = 0
Query:  154 KKERQAHRPDNDTVVRAKELWNKLRERKITEEQRAPLVRELMQLLRGKVYKISMKHDASRVVQSAVTFGSNTDRDLILTELEGHLVELSQLQYAHFIVLKLLQRARGAEEQRRVTKDLRGHVAKLATHSIGARVIQQAMDMLPSARAAQLRAELYGPEHALFADMAFDKAPRNLKQVIALRPDRRAIVLEGVKRTLGKIAQKGLLSFAFAHSLLWEYMSEVNVNSDGGAAIADMVPTVIDGYMALLSTRDGSRAAALCAAYGSAKDRKRMMKGFKGFVGTSLMHRDAYLAVLRLVASVDDTVTCQKSVLA 463
            KK+R+  RP  + V RAK++WN +RER + + +RA LV EL  L++GK+Y ++ KHDASRV+QS +  G    R  I+ E+  HLVE+ ++QY  F+V K++ R     ++  + K L GHV ++ TH+I A VI+ A + L  ++   L+ E YG E A F      ++ RNL  +IA  PD++A VL+ +   L ++  K LL  AF  SLLWEYM   N   D    +  MV  V D  +ALL+TR+G+R    C + G+AKDRKR++K  K  V  +  H   YL ++R+   VDD+V  QKS+LA
Sbjct:   48 KKQRKMQRPHYEMVTRAKQIWNVIRERDVDKNKRATLVDELYTLVKGKIYDVAAKHDASRVIQSLMQHGKPEHRSQIVLEMNEHLVEVCKMQYGCFLVQKMI-RYGSVADRTAIVKCLTGHVVQIGTHNIAANVIEYAQEYLKPSQLTALKLEFYGREFAYFQS----ESKRNLADIIAAHPDKKADVLKHLTTILNRMVDKQLLGLAFVQSLLWEYMC--NAEHDD---VMHMVANVRDASLALLATRNGARVVNKCISLGAAKDRKRIIKALKDKVLDACNHPSGYLVIMRIFDVVDDSVLVQKSILA 347          
BLAST of jgi.p|Trimin1|348003 vs. uniprot
Match: A0A448Z1A3_9STRA (PUM-HD domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z1A3_9STRA)

HSP 1 Score: 214 bits (544), Expect = 5.800e-56
Identity = 141/334 (42.22%), Postives = 202/334 (60.48%), Query Frame = 0
Query:  139 EAAEATGSSKRRGDLKKERQAHRPDNDTVVRAKELWNKLRERKITEEQRAPLVRELMQLLRGKVYKISMKHDASRVVQSAVTFGSNTDRDLILTEL---EGHLVELSQLQYAHFIVLKLLQR-ARGAEEQRRVTKDLRGHVAKLATHSIGARVIQQAMDMLPSARAAQLRAELYGPEHALFADMAFDKAPRNLKQVI--ALRPDRRAIVLEGVKRTLGKIAQKGLLSFAFAHSLLWEYMSEVNVNSDGGAAIADMVPTVIDGYMALLSTRDGSRAAALCAAYGSAKDRKRMMKGFKGFVGTSLMHRDAYLAVLRLVASVDDTVTCQKSVLAELL 466
            EA E + S+++R  ++KERQA R   ++V  AK LWNKLR +  T+E    L+ ++M L+RGKV +I+++HDASRVVQ+A+ FGS+  R  IL E+   EG L E++++QYAHF+ LK ++  AR     + + K  +G + KLA H +GARV++     LPS   A L+ E YGP  +LFA      AP +LK  I  A    ++   ++ V+  + K   K    F +   L  EY+   + +      I  +  +V D  + LLSTR G+R  A CA+YG+ KDRKR  K  KG+  +SL+HRDAYLA+LRLV   DDTV+ QKSVL E+L
Sbjct:   42 EARELSSSAQKRL-VRKERQATRRHAESVTEAKALWNKLRMKTNTKEDTQKLMEKVMDLIRGKVREIALQHDASRVVQAAIQFGSDAQRKEILEEICRSEGSLGEMAKIQYAHFVSLKFIKYCARDEASVKLIVKSFKGEMPKLAVHGVGARVVESIFLNLPSKLTAPLKQEFYGPHFSLFAK-DLTSAP-SLKSNIENAKTETQKKSAIDFVQAIINKGMTKSFYGFTYFQQLFAEYVEVADPSE-----IRSISSSVADHSIHLLSTRVGTRVVAACASYGTPKDRKRSCKSLKGYTSSSLLHRDAYLALLRLVQVTDDTVSIQKSVLNEIL 367          
BLAST of jgi.p|Trimin1|348003 vs. uniprot
Match: A0A4D9CTP5_9STRA (PUM-HD domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CTP5_9STRA)

HSP 1 Score: 215 bits (548), Expect = 1.490e-55
Identity = 128/323 (39.63%), Postives = 191/323 (59.13%), Query Frame = 0
Query:  145 GSSKRRGDLKKERQAHRPDNDTVVRAKELWNKLRERKITEEQRAPLVRELMQLLRGKVYKISMKHDASRVVQSAVTFGSNTDRDLILTELEGHLVELSQLQYAHFIVLKLLQ-RARGAEEQRRVTKDLRGHVAKLATHSIGARVIQQAMDMLPSARAAQLRAELYGPEHALFADMAFDKAPRNLKQVIALRPDRRAIVLEGVKRTLGKIAQKGLLSFAFAHSLLWEYMSEVNVNSDGGAAIADMVPTVIDGYMALLSTRDGSRAAALCAAYGSAKDRKRMMKGFKGFVGTSLMHRDAYLAVLRLVASVDDTVTCQKSVLAELL 466
            G + ++  +K ER   RP  D V RAK +W   R +++ +++R  +  EL  L++GK+++I++KHDA+RVVQ+A+  G+   ++  +TEL  +L+E S++QYAHFIVL+LL   A    E++RV++   G V  LATH++GA+V++      P      LRAELYG E  L          R+L  ++   P RR  VL  V   + K+  K L    F   L+WEY         G   + ++VPT++D  + L  TR G +A A CAAYG+ KDRK+M+K  KG+V  +L+H+DAYL +LRL   +DDTV   K+V  ELL
Sbjct:   24 GPANKKRHVKYERAKARPAFDLVARAKAIWAIFRSKRLGKDEREKMSEELYSLIKGKLHQIAVKHDAARVVQAALKHGNRIQQEAYITELLEYLLEFSKVQYAHFIVLRLLDVTASLPAERKRVSRVFTGKVHTLATHAVGAKVLEGIFSTYPKQDTQALRAELYGRETTLLLGDPTGPQGRDLAAILRELPGRRERVLSNVLGMIQKMLVKDLAVLPFVQELIWEYTCNA-----GPVLVRELVPTLLDYLLLLTGTRPGCKALAECAAYGTPKDRKKMLKALKGYVVPTLLHKDAYLLILRLADVIDDTVAFNKAVWQELL 341          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348003 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z7T9_9STRA0.000e+0100.00Armadillo-type protein n=1 Tax=Tribonema minus Tax... [more]
A0A6H5K7W3_9PHAE4.470e-15349.71PUM-HD domain-containing protein n=1 Tax=Ectocarpu... [more]
D7FHP3_ECTSI9.100e-13144.29PUM-HD domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A7S2FGZ7_9STRA1.190e-7234.17Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S4QEX1_9STRA6.080e-6844.15Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7R9U7V4_9STRA4.860e-6030.86Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
B5YP90_THAPS9.030e-5840.51RNA-binding protein of the pumilio family n=1 Tax=... [more]
D0MZX1_PHYIT1.530e-5640.97PUM-HD domain-containing protein n=16 Tax=Phytopht... [more]
A0A448Z1A3_9STRA5.800e-5642.22PUM-HD domain-containing protein n=1 Tax=Pseudo-ni... [more]
A0A4D9CTP5_9STRA1.490e-5539.63PUM-HD domain-containing protein n=2 Tax=Monodopsi... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001313Pumilio RNA-binding repeatSMARTSM00025pum_5coord: 197..232
e-value: 0.19
score: 20.8
coord: 270..306
e-value: 33.0
score: 8.9
coord: 233..269
e-value: 0.03
score: 23.5
IPR001313Pumilio RNA-binding repeatPFAMPF00806PUFcoord: 211..234
e-value: 4.4
score: 7.1
coord: 274..293
e-value: 0.47
score: 10.2
IPR001313Pumilio RNA-binding repeatPROSITEPS50302PUMcoord: 233..269
score: 7.660659
IPR001313Pumilio RNA-binding repeatPROSITEPS50302PUMcoord: 270..305
score: 8.243944
IPR001313Pumilio RNA-binding repeatPROSITEPS50302PUMcoord: 196..232
score: 7.637328
IPR012959CPL domainPFAMPF08144CPLcoord: 624..757
e-value: 4.3E-11
score: 43.4
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 168..471
e-value: 1.9E-31
score: 111.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 124..167
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 513..575
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..167
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 69..95
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 502..606
NoneNo IPR availablePANTHERPTHR13389:SF0PUMILIO HOMOLOG 3coord: 621..823
coord: 71..468
IPR040059Pumilio homologue 3PANTHERPTHR13389UNCHARACTERIZEDcoord: 71..468
IPR040059Pumilio homologue 3PANTHERPTHR13389UNCHARACTERIZEDcoord: 621..823
IPR033133Pumilio homology domainPROSITEPS50303PUM_HDcoord: 169..521
score: 9.898373
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 179..466

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_18contigContig_18:284058..292526 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348003mRNA_1267Tribonema minus UTEX_B_3156 mRNAContig_18 283934..292526 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|348003|estExt_Genemark1.C_Ctg_180030 ID=Trimin1|348003|estExt_Genemark1.C_Ctg_180030|Name=jgi.p|Trimin1|348003|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=894bp
MGKDRSSGGGGGSGGDKRGFKGKTGGAKGGFKAKAGFKSKTDGFNKGGSP
GAGAKGGKGGSEIKKKPWAGNGGKPDAKKPWTKKPGSKDGDAKPGGKPYK
PTGHNKPLVGKKPWKPSNKGDSSKPGGFKRKAPEGADKEAAEATGSSKRR
GDLKKERQAHRPDNDTVVRAKELWNKLRERKITEEQRAPLVRELMQLLRG
KVYKISMKHDASRVVQSAVTFGSNTDRDLILTELEGHLVELSQLQYAHFI
VLKLLQRARGAEEQRRVTKDLRGHVAKLATHSIGARVIQQAMDMLPSARA
AQLRAELYGPEHALFADMAFDKAPRNLKQVIALRPDRRAIVLEGVKRTLG
KIAQKGLLSFAFAHSLLWEYMSEVNVNSDGGAAIADMVPTVIDGYMALLS
TRDGSRAAALCAAYGSAKDRKRMMKGFKGFVGTSLMHRDAYLAVLRLVAS
VDDTVTCQKSVLAELLVPLPRPVAAAVTGVTASGAAVKPGEGVTAEAWVP
KGVARSSGTGEAVVEDDEDGGEFDGMTDEFDGEEGGEGEGDDGDEEGAGD
SDQQQDEAEESDIEAGEDEAAAEEETTDAVGAQGDADTSAQAALESKDAA
ATPGDADADASAAPALLPVSLHRNGCKLLLYLAAPDATKYLDPEERHLLE
PAMVPVAQGEGEAPVLVCASKKDPEVRRQELLAFLKAPLQSLCQEHTAEL
MRSKFAGANVLLEVTKNLRTPDLVAAIAAAAVAVPEEGHLAMQEDPAGHL
FMKQLLLWEGEQQQQSAAAAAGWFADALLKRLQAGDGGGLRGWAGSNRGA
FVLAALAGVPSAGAAVRKALKGRTPPAEGGKGAEVLAAALASDAAAPAPA
LKLPAAASKASATAAGAVAAKGKGGSAAASAPATTKVRGRKRQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001313Pumilio_RNA-bd_rpt
IPR012959CPL_dom
IPR011989ARM-like
IPR040059PUM3
IPR033133PUM-HD
IPR016024ARM-type_fold