Trimin1|347896|estExt_Genemark1.C_Ctg_170036 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|347896
Unique NameTrimin1|347896|estExt_Genemark1.C_Ctg_170036
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length432
Homology
BLAST of jgi.p|Trimin1|347896 vs. uniprot
Match: A0A836CLN2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLN2_9STRA)

HSP 1 Score: 914 bits (2362), Expect = 0.000e+0
Identity = 431/431 (100.00%), Postives = 431/431 (100.00%), Query Frame = 0
Query:    1 MELEGLTSDTRARHQHLLWLAPYHACTPTVLWGTPKPKVSAVNRFQEDRDLLHIVLSYLGPGQHLFVATIGKRWRRAYNSTAISQGWHSTEPYVKTRTSSACFSLARLKYAVQGGKLDMLSKSKTSTEHSFARTMGFNASQELLQWARANGMPWYDDVAIGAAAAGKLESLKWIHKQVLFGWSWPAYLSSGKVALVAAMYGQVAVLEWMWMSRGGSFLKDLDIGEVAAVTGKVPTLHWMQGRCLSAQKLQRIRDNAAFFTQPGVLLWARDEGGVAWDASTFTAATTSGSVDFCRWLRKEGCAFDLTDACVGAAFSGSIDMIKYVREIAGQEWSLEHVGMIMLAAGYEGRLRAFKWAHAQGAPWLPAAFTAEQDGTHFCRVWRAPVLQWAIGHGCPWGDWTSQTCALLKQSGNFDKELAWAHANNCPCGCPR 431
            MELEGLTSDTRARHQHLLWLAPYHACTPTVLWGTPKPKVSAVNRFQEDRDLLHIVLSYLGPGQHLFVATIGKRWRRAYNSTAISQGWHSTEPYVKTRTSSACFSLARLKYAVQGGKLDMLSKSKTSTEHSFARTMGFNASQELLQWARANGMPWYDDVAIGAAAAGKLESLKWIHKQVLFGWSWPAYLSSGKVALVAAMYGQVAVLEWMWMSRGGSFLKDLDIGEVAAVTGKVPTLHWMQGRCLSAQKLQRIRDNAAFFTQPGVLLWARDEGGVAWDASTFTAATTSGSVDFCRWLRKEGCAFDLTDACVGAAFSGSIDMIKYVREIAGQEWSLEHVGMIMLAAGYEGRLRAFKWAHAQGAPWLPAAFTAEQDGTHFCRVWRAPVLQWAIGHGCPWGDWTSQTCALLKQSGNFDKELAWAHANNCPCGCPR
Sbjct:    1 MELEGLTSDTRARHQHLLWLAPYHACTPTVLWGTPKPKVSAVNRFQEDRDLLHIVLSYLGPGQHLFVATIGKRWRRAYNSTAISQGWHSTEPYVKTRTSSACFSLARLKYAVQGGKLDMLSKSKTSTEHSFARTMGFNASQELLQWARANGMPWYDDVAIGAAAAGKLESLKWIHKQVLFGWSWPAYLSSGKVALVAAMYGQVAVLEWMWMSRGGSFLKDLDIGEVAAVTGKVPTLHWMQGRCLSAQKLQRIRDNAAFFTQPGVLLWARDEGGVAWDASTFTAATTSGSVDFCRWLRKEGCAFDLTDACVGAAFSGSIDMIKYVREIAGQEWSLEHVGMIMLAAGYEGRLRAFKWAHAQGAPWLPAAFTAEQDGTHFCRVWRAPVLQWAIGHGCPWGDWTSQTCALLKQSGNFDKELAWAHANNCPCGCPR 431          
BLAST of jgi.p|Trimin1|347896 vs. uniprot
Match: A0A835YNS1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNS1_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 2.010e-16
Identity = 107/410 (26.10%), Postives = 165/410 (40.24%), Query Frame = 0
Query:   51 LLHIVLSYLGPGQHLFVATIGKRWRRAYNS-TAISQGWHSTEPYV-KTRTSSACFSLARLKYAV--------QGGKLDMLSKSKTSTEHSFARTM---GFNASQELLQWARANGMP-WYD---DVAIGAAAAGKLES-LKWIHKQVLFGWSWPAYLSSGKVALVAAMYGQVAVLEWMWMSRGGSFLKDLDIGEVAAVTGKVPTLHWMQGRCLSAQKLQ---RIRDNAAFFTQPGVLLWARDEGGVAWDASTFTAATTSGSVDFCRWLRKEGCAFDLTDACVGAAFSGSID-------MIKYVREIAGQEWSLEHVGMIMLAAGYEGR-LRAFKWAHAQGAPWLPAAFTAEQDGTHFCRVWRAPVLQWAIGHGCPWGDWTSQTCALLKQSGNFD--KELAWAHANNCPCGC 429
            LL  +LS++G GQ L++A++   WR AY S TA  QG     P+V  T  ++   + ARL+  +        +GG  D+   +  S      R M   G +A+    +      +  W D    +   A    + E+ L W+ +       WP +  +  +   AA  GQ+A L+++     G  L    I + + V    P      G      ++     + D AA      VL W R E  + +   T   A   G +   +WL   GC  D+ D C   +F    D        ++++R + G  WS +     +L    + R   A +W   +GA W P   T      H C  + A  L  A   GCPWG WT   C ++ + G +   K L   HA  CPC C
Sbjct:   45 LLEAILSFVGCGQWLYLASVAHSWRTAYMSVTARRQG----VPWVCVTAAAAVAEAPARLEMGLACGVRLPARGGSFDVEEAAGASGSTEVIRRMRQLGMSAAGVAAECGEHMTLQTWIDLVPHILCDAYDGAQQEAALIWLSQHAR---PWPVWYCT-HLCFTAAENGQLAALKFLMRDDRGQALFGPLIPDPSVVDTAGPEWRHAPGYSFEHNRVGYQFTLMDKAAVGGNVEVLRWLRQEHALPFTPFTMRFAAEKGHLAALKWLHAAGCPHDVEDLCA-RSFRALADTPGVTPSQMEWLRSLGGS-WSRQTATHALLHLLRDFRNTAAVQWLRREGAEW-PELNTVVNQFDH-CDDFVAEALVDAARQGCPWGRWTPTHCRIVSR-GRYSIIKPL---HAAGCPCEC 438          
BLAST of jgi.p|Trimin1|347896 vs. uniprot
Match: A0A836CDR0_9STRA (GPS domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDR0_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 8.850e-15
Identity = 103/433 (23.79%), Postives = 166/433 (38.34%), Query Frame = 0
Query:   51 LLHIVLSYLGPGQHLFVATIGKRWRRAYNSTAISQGWHSTEPYVKTRTSSACFSLARLKYAVQGGKLD-MLSKSKTSTEHSFARTMGFNASQELLQWARANGM-PWYDDVAIGAAA-----------AGKLES------------------------LKWIHKQVLFGWSWPAYLSSGKVALVAAMYGQVAVLEWMWM--------SRGGSFLKDLDIG--EVAAVTGKVPTLHWMQGRCLSAQKLQRIRDNAAFFTQPGVLLWARDEGGVAWDASTFTAATTSGSVDFCRWLRKEGCAFDLTDACVGAAFSGSI----DMIKYVREIAGQEWSLEHVGMIMLAAGYEGRLRAFKWAHAQGAPWLPAAFTAEQDGTHFCRVWRAPVLQWAIGHGCPWGDWTSQTCALLKQSGNFDKELAWA-HANNCPCGCPR 431
            LL  +LS+ GPG  LF+AT+ +R      +   S   +  +  + T  ++A  S +RL  A QG K   M+              +G     + ++  R  G+     DV +GAA            AG L                          L W+  Q+  G +WPAY     +   AAMYG++  LE+++          R  S   +++ G  +   +    P+  ++     + + +  + D AA       L W +    + +   T   A   G +   +WLR   C  D+         S  +      + +VR   G +WS + +  +++ A          W  A+GA W   A  AE   T    V R   L WA+  GCP+G W+S+ C +L +       +  A H   CPC CPR
Sbjct:  208 LLGSILSFTGPGDFLFLATVSRRVGAVGIAHVASV--YGADSLLMTELNAALTSTSRLALA-QGDKFTHMVHLCSQQPMPRACELLGEMGCAQAIEALREGGLYTGGGDVLVGAARKCNVGLVQSLWAGPLNKPELPEPICRAIGLQAAKRGDDGTVLSWLAPQLRAGTAWPAYYHH-VLCNAAAMYGRLNTLEFLFAHGLTLFGEQRPVSLDDNVNAGADDDDRIVIAPPSAIYVDAS--ATKHVVTLLDAAAMSDDAAALHWLQSRQPLEFTGVTMQLAAQWGGLPTLKWLRAHECPHDINAIASILLKSHFVVATPPKLAWVRSCGGGDWSAQGMTDMLVEALAHSTPALAHWLRAEGARW--PADLAEVVRTKV-EVVRPRNLLWAVQQGCPFGRWSSEICEVLSEHSAQAAAVKLALHDLGCPCTCPR 631          
BLAST of jgi.p|Trimin1|347896 vs. uniprot
Match: A0A835YRC9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRC9_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 1.410e-7
Identity = 47/193 (24.35%), Postives = 70/193 (36.27%), Query Frame = 0
Query:  273 GVAWDASTFTAATTSGSVDFCRWLRKE-----------------------------GCAFDLTDACVGAAFSGSIDMIKYVREIAGQEWSLEHVGMIMLAAGYEGRLRAFKWAHAQGAPWLPAAFT------AEQDGTHFCRVWRAPVLQWAIGHGCPWGDW--------TSQTCALLKQSGNFDKELAWAHA 422
            G+ WD +    A  SG     +WL +                               C +       GAA+SGS+DM+K+VR+ A + W   ++  ++  AG  G +   KW  AQGAPW  +           Q   + C  W      WA+ +G  W  W        ++  CA       +     WAHA
Sbjct:  120 GMDWDPNLVAQAAASGDAARLQWLVRHRHXXXXXXXXXXXXXXXXXXXXXXXXXXXXCPYSGEIVAQGAAYSGSLDMLKWVRQ-ANETWEYYNLAHVLSWAGLRGHVHVAKWLLAQGAPWPLSVLVNVRFLVGAQADVYDC--WSPAFAAWALDNGWDWAGWNCLATLQASAPECAAY--GAKYAALQEWAHA 307          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|347896 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A836CLN2_9STRA0.000e+0100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YNS1_9STRA2.010e-1626.10Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CDR0_9STRA8.850e-1523.79GPS domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A835YRC9_9STRA1.410e-724.35Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_17contigContig_17:272173..277114 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|347896mRNA_3340Tribonema minus UTEX_B_3156 mRNAContig_17 272173..277114 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|347896|estExt_Genemark1.C_Ctg_170036 ID=Trimin1|347896|estExt_Genemark1.C_Ctg_170036|Name=jgi.p|Trimin1|347896|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=432bp
MELEGLTSDTRARHQHLLWLAPYHACTPTVLWGTPKPKVSAVNRFQEDRD
LLHIVLSYLGPGQHLFVATIGKRWRRAYNSTAISQGWHSTEPYVKTRTSS
ACFSLARLKYAVQGGKLDMLSKSKTSTEHSFARTMGFNASQELLQWARAN
GMPWYDDVAIGAAAAGKLESLKWIHKQVLFGWSWPAYLSSGKVALVAAMY
GQVAVLEWMWMSRGGSFLKDLDIGEVAAVTGKVPTLHWMQGRCLSAQKLQ
RIRDNAAFFTQPGVLLWARDEGGVAWDASTFTAATTSGSVDFCRWLRKEG
CAFDLTDACVGAAFSGSIDMIKYVREIAGQEWSLEHVGMIMLAAGYEGRL
RAFKWAHAQGAPWLPAAFTAEQDGTHFCRVWRAPVLQWAIGHGCPWGDWT
SQTCALLKQSGNFDKELAWAHANNCPCGCPR*
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