Trimin1|347507|estExt_Genemark1.C_Ctg_120152 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|347507
Unique NameTrimin1|347507|estExt_Genemark1.C_Ctg_120152
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length366
Homology
BLAST of jgi.p|Trimin1|347507 vs. uniprot
Match: A0A835ZDH7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDH7_9STRA)

HSP 1 Score: 673 bits (1737), Expect = 1.270e-243
Identity = 365/365 (100.00%), Postives = 365/365 (100.00%), Query Frame = 0
Query:    1 MGKEALLTQAANRRLGLTLYRAGRLAEAEAAVRAAVGAGDGAAQLAEYVGAVLLVARAQLFQGKLAAAAATCADAVRACEDGVSGATPDTAALGNALRSLGVVQLLRGDGDAAETSLLRAARLSDGAADQAKARIARQGPAVARVLVVCALSSLAAYSMSIETAEGHRDALEYWQEAVSVLTAADAQAAASACAKTKRELQETHAITLTNLAEAALTGAPGPYETAGAGGKADTERPSAHLREALKLSEQSMGHNDPYLGWVLAQLARCCHLAGSAVTAEGLFRSAMEKMDPEDVRGKQALAMHPSPANIFLLQGTLSMYSQLLLQWEKREAVGRKMQQRAQDLEAGLPLKLPPRVSLPMLHLCR 365
            MGKEALLTQAANRRLGLTLYRAGRLAEAEAAVRAAVGAGDGAAQLAEYVGAVLLVARAQLFQGKLAAAAATCADAVRACEDGVSGATPDTAALGNALRSLGVVQLLRGDGDAAETSLLRAARLSDGAADQAKARIARQGPAVARVLVVCALSSLAAYSMSIETAEGHRDALEYWQEAVSVLTAADAQAAASACAKTKRELQETHAITLTNLAEAALTGAPGPYETAGAGGKADTERPSAHLREALKLSEQSMGHNDPYLGWVLAQLARCCHLAGSAVTAEGLFRSAMEKMDPEDVRGKQALAMHPSPANIFLLQGTLSMYSQLLLQWEKREAVGRKMQQRAQDLEAGLPLKLPPRVSLPMLHLCR
Sbjct:    1 MGKEALLTQAANRRLGLTLYRAGRLAEAEAAVRAAVGAGDGAAQLAEYVGAVLLVARAQLFQGKLAAAAATCADAVRACEDGVSGATPDTAALGNALRSLGVVQLLRGDGDAAETSLLRAARLSDGAADQAKARIARQGPAVARVLVVCALSSLAAYSMSIETAEGHRDALEYWQEAVSVLTAADAQAAASACAKTKRELQETHAITLTNLAEAALTGAPGPYETAGAGGKADTERPSAHLREALKLSEQSMGHNDPYLGWVLAQLARCCHLAGSAVTAEGLFRSAMEKMDPEDVRGKQALAMHPSPANIFLLQGTLSMYSQLLLQWEKREAVGRKMQQRAQDLEAGLPLKLPPRVSLPMLHLCR 365          
BLAST of jgi.p|Trimin1|347507 vs. uniprot
Match: D7G6E2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6E2_ECTSI)

HSP 1 Score: 157 bits (398), Expect = 1.090e-40
Identity = 142/394 (36.04%), Postives = 198/394 (50.25%), Query Frame = 0
Query:    1 MGKEALLTQAANRRLGLTLYRAGRLAEAEAAVRAAVGAGDGAAQLAEYVGAVLLVARAQLFQGKLAAAAATCADAVRACEDGVSGATPDTAALGNALRSLGVVQLLRGDGDAAETSLLRAARLSDGAADQAKARIARQGPAVARVLVVCALSSLAAYSMSIETAEGHRDALEYWQEAVSVLTAADAQAA------------------ASACAKTKRELQETHAITLTNLAEAALTGAPGPYETAGAGGKADTERPSAHLREALKLSEQSMGHNDPYLGWVLAQLARCCHLAGSAVTAEGLFRSAMEKMD--PEDV----------RGKQALAM-HPSPANIFLLQGTLSMYSQLLLQWEKREAVGRKMQQRAQDLEAGLPLKLPPRVSLPMLHL 363
            MG++  LT+AA  RL   LY   R   AEA +R     G+  A+  ++   +LL+++AQLFQGK+  A  T + AV  C+      TPDT ALG ALR LGV+Q+L G+ D AETSLLRAARL   +ADQ K                  L+++AA++++    +   +A+E   EA +  + +D                      A+A A T +  +  HA  L+  A+  L    G            T   S  L EALK+ EQ +    P   W L+ LARC   AG AVTAEGLFR+A++ +    E+V           G  AL +   SP +      TL  YS+LLLQWEKREA G  + ++A+ +E+ L LK P  ++L MLHL
Sbjct:   65 MGEDCALTRAAVHRLAQVLYDDQRFGAAEAILRK----GESNARK-QFPTELLLLSKAQLFQGKIPVAVETSSRAVDLCQQDEDN-TPDTDALGQALRQLGVIQVLSGEEDDAETSLLRAARLGSTSADQGKG-----------------LAAVAAFNIARGDEQSVEEAVELLNEACATTSESDEHKEPTAXXXXXXXXXGGXXNDAAASAATSKVARLAHASVLSTAAQGELVLERG------------TATASERLGEALKIREQLLPIGHPATAWTLSLLARCHVAAGEAVTAEGLFRAALDSLQGIAEEVDDGIARRQRSAGTVALPLLFASPLHPHTKAATLRGYSELLLQWEKREAEGEVVARQAEKVESSLLLKPPVGLTLHMLHL 423          
BLAST of jgi.p|Trimin1|347507 vs. uniprot
Match: K3X1J5_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X1J5_GLOUD)

HSP 1 Score: 63.2 bits (152), Expect = 2.910e-7
Identity = 42/132 (31.82%), Postives = 61/132 (46.21%), Query Frame = 0
Query:  231 KADTERPSAHLREALKLSEQSMGHNDPYLGWVLAQLARCCHLAGSAVTAEGLFRSAMEKMDPEDVRGKQALAMHPSPANIFLLQGTLSMYSQLLLQWEKREAVGRKMQQRAQDLEAGLPLKLPPRVSLPMLH 362
            K   E    HL +ALK+ ++  G N   L  +L ++A  CH  G AV+AEGLF +A+E  + E         +  S  +       L  Y  LL  WEKREA   +  ++A D+E  +  +   R     LH
Sbjct:  343 KKKPEEAMEHLGKALKIQQREKGGNALALSRILGKIAEGCHAVGQAVSAEGLFTTAVESFEKE---------IFLSITDQVEYARVLRAYGDLLRNWEKREAGAEQKYKQANDVEVEIARRCQKRDCRSPLH 465          
BLAST of jgi.p|Trimin1|347507 vs. uniprot
Match: A0A7S4AX63_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AX63_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 8.700e-6
Identity = 34/92 (36.96%), Postives = 50/92 (54.35%), Query Frame = 0
Query:  259 LGWVLAQLARCCHLAGSAVTAEGLFRSAMEKMD-PEDVRGKQALAMHPSPANIFLLQGTLSMYSQLLLQWEKREAVGRKMQQRAQDLEAGLP 349
            L WVL+ +  C H AGSAVTAEGLF+SA+ +   P D               +  L+     YS+L ++W+KRE     +++ A D+E+ LP
Sbjct:  348 LSWVLSVVGSCYHQAGSAVTAEGLFQSAINRKGVPTDT------------LTMLQLRDAYIEYSKLCMEWDKREKDAENLKKDADDVESSLP 427          
BLAST of jgi.p|Trimin1|347507 vs. uniprot
Match: A0A1E7FQD7_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FQD7_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.510e-5
Identity = 34/112 (30.36%), Postives = 58/112 (51.79%), Query Frame = 0
Query:  238 SAHLREALKLSEQSMGHNDPYLGWVLAQLARCCHLAGSAVTAEGLFRSAMEKMDPEDVRGKQALAMHPSPANIFLLQGTLSMYSQLLLQWEKREAVGRKMQQRAQDLEAGLP 349
            S + +++L+  +        +L WVL+ +A C H A SAVTAEGLF+SA+ K +           + P       L+     YS L  QW+ R+   +++++ A+ +E+ LP
Sbjct:  316 SDYAKKSLEFYDAESIIGKEHLSWVLSVVASCYHQADSAVTAEGLFKSAINKKN-----------IPPGTLTSLQLRDAYHGYSNLCKQWDNRDKDAQQLKEEAEIIESKLP 416          
BLAST of jgi.p|Trimin1|347507 vs. uniprot
Match: A0A5D6Y3Z1_9STRA (Suf domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y3Z1_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 2.250e-5
Identity = 43/132 (32.58%), Postives = 58/132 (43.94%), Query Frame = 0
Query:  231 KADTERPSAHLREALKLSEQSMGHNDPYLGWVLAQLARCCHLAGSAVTAEGLFRSAMEKMDPEDVRGKQALAMHPSPANIFLLQGTLSMYSQLLLQWEKREAVGRKMQQRAQDLEAGLPLKLPPRVSLPMLH 362
            K   E    HL  ALK  +     N   L   L ++A  CH  G AV+AEGLF +A+E  + E     +AL    S  +       L  Y  LL  WEKRE   ++   +A D+E  L  +   R S   L+
Sbjct:  967 KRKPEEAMEHLGRALKTQQNDKSGNALALSRTLGKIAEGCHAMGQAVSAEGLFTTAVEAFEKE-----KAL----STTDQVEFASVLRAYGDLLQNWEKREGGAKQKYAQADDVEQRLARQCQERKSRAPLY 1089          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|347507 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A835ZDH7_9STRA1.270e-243100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7G6E2_ECTSI1.090e-4036.04Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
K3X1J5_GLOUD2.910e-731.82Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A7S4AX63_9STRA8.700e-636.96Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A1E7FQD7_9STRA1.510e-530.36Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
A0A5D6Y3Z1_9STRA2.250e-532.58Suf domain-containing protein n=1 Tax=Pythium bras... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 149..306
e-value: 3.9E-6
score: 28.2
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 8..139
e-value: 6.3E-6
score: 27.9
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 11..127

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_12contigContig_12:1353027..1358028 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|347507mRNA_3825Tribonema minus UTEX_B_3156 mRNAContig_12 1353027..1358046 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|347507|estExt_Genemark1.C_Ctg_120152 ID=Trimin1|347507|estExt_Genemark1.C_Ctg_120152|Name=jgi.p|Trimin1|347507|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=366bp
MGKEALLTQAANRRLGLTLYRAGRLAEAEAAVRAAVGAGDGAAQLAEYVG
AVLLVARAQLFQGKLAAAAATCADAVRACEDGVSGATPDTAALGNALRSL
GVVQLLRGDGDAAETSLLRAARLSDGAADQAKARIARQGPAVARVLVVCA
LSSLAAYSMSIETAEGHRDALEYWQEAVSVLTAADAQAAASACAKTKREL
QETHAITLTNLAEAALTGAPGPYETAGAGGKADTERPSAHLREALKLSEQ
SMGHNDPYLGWVLAQLARCCHLAGSAVTAEGLFRSAMEKMDPEDVRGKQA
LAMHPSPANIFLLQGTLSMYSQLLLQWEKREAVGRKMQQRAQDLEAGLPL
KLPPRVSLPMLHLCR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf