Trimin1|347397|estExt_Genemark1.C_Ctg_110119 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|347397
Unique NameTrimin1|347397|estExt_Genemark1.C_Ctg_110119
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length423
Homology
BLAST of jgi.p|Trimin1|347397 vs. uniprot
Match: A0A836CMK8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMK8_9STRA)

HSP 1 Score: 778 bits (2008), Expect = 5.380e-283
Identity = 422/422 (100.00%), Postives = 422/422 (100.00%), Query Frame = 0
Query:    1 MQPGTVFVFQMPTHREHVVYEAHAVADAVQRHRVAGWTAEDLLDGFEDAFVLWSIAAAPSGAAAEESAARGNRILPCAGAWQELSKVAAIFGELKGTTVSAXXXXXXXXXXXXXXAVAACALPASLESSHRQLLNVCMQVWSVGYARALGMASTHRPGLTVTLTTEMFRKARPGDKLRLESRLTKGGKALGYLEMVAINEACGSLVARGRHVKYLPMGRQWDLVMGSPLLAPLALAMHERDMTRRMANPMWMKXXXXXXXXXXXXXKGVPEGETLVQQVAPLNLQLDTTLEAGGEHGASGSAQQRGSAEIIITPQLFNFMGSFHGGAICAAAEQMAAATAPAEVDGKPTWIQHMETQYFTAQKKRAALTGEYRAGGLAAGCSDVTFLSGGLKMAGSRMQWGEPPWPERACVVSELEGAVRKF 422
            MQPGTVFVFQMPTHREHVVYEAHAVADAVQRHRVAGWTAEDLLDGFEDAFVLWSIAAAPSGAAAEESAARGNRILPCAGAWQELSKVAAIFGELKGTTVSAXXXXXXXXXXXXXXAVAACALPASLESSHRQLLNVCMQVWSVGYARALGMASTHRPGLTVTLTTEMFRKARPGDKLRLESRLTKGGKALGYLEMVAINEACGSLVARGRHVKYLPMGRQWDLVMGSPLLAPLALAMHERDMTRRMANPMWMKXXXXXXXXXXXXXKGVPEGETLVQQVAPLNLQLDTTLEAGGEHGASGSAQQRGSAEIIITPQLFNFMGSFHGGAICAAAEQMAAATAPAEVDGKPTWIQHMETQYFTAQKKRAALTGEYRAGGLAAGCSDVTFLSGGLKMAGSRMQWGEPPWPERACVVSELEGAVRKF
Sbjct:    1 MQPGTVFVFQMPTHREHVVYEAHAVADAVQRHRVAGWTAEDLLDGFEDAFVLWSIAAAPSGAAAEESAARGNRILPCAGAWQELSKVAAIFGELKGTTVSAXXXXXXXXXXXXXXAVAACALPASLESSHRQLLNVCMQVWSVGYARALGMASTHRPGLTVTLTTEMFRKARPGDKLRLESRLTKGGKALGYLEMVAINEACGSLVARGRHVKYLPMGRQWDLVMGSPLLAPLALAMHERDMTRRMANPMWMKXXXXXXXXXXXXXKGVPEGETLVQQVAPLNLQLDTTLEAGGEHGASGSAQQRGSAEIIITPQLFNFMGSFHGGAICAAAEQMAAATAPAEVDGKPTWIQHMETQYFTAQKKRAALTGEYRAGGLAAGCSDVTFLSGGLKMAGSRMQWGEPPWPERACVVSELEGAVRKF 422          
BLAST of jgi.p|Trimin1|347397 vs. uniprot
Match: A0A7S3H750_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H750_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 3.040e-11
Identity = 67/244 (27.46%), Postives = 100/244 (40.98%), Query Frame = 0
Query:  154 THRPGLTVTLTTEMFRKARPGDKLRLESRLTKGGKALGYLEMVAINEACGSLVARGRHVKYLPMGRQWDLVMGSPLLAPLALAMHERDMTRRMANPMWMKXXXXXXXXXXXXXKGVPE-----------GETLVQ-----QVAPLNLQLDTTLEAGGEHGASGSAQQRGSAEIIITPQLFNFMGSFHGGAICAAAEQMAAAT------------APAEVDGKPTWIQHMETQYFTAQKKRAALT 369
            THRPGL++ L+TE+ +    GD++   +   K GK LG+  M  +N   G LVARG+H++YL MG  +DL+   P   P AL  +E    ++                        PE           G T V      Q  P     + +L    E G +  AQ      + + P + N +GS HGGA+  A EQ    +             PA V     ++  +E +Y +A K    +T
Sbjct:   90 THRPGLSLHLSTEIIKNVNAGDEVTFLTHADKLGKTLGFCSMEMLNSK-GELVARGKHIRYLQMGFSFDLIT-KPWALPWALKFYETFYGKKTDAMATTGETAGKGEHIFRKPLHFPELDGLGRVFELLGLTKVDPTETAQALPAVRSAEDSLLYCSEDGRADPAQVAVYG-LTVRPIVCNMLGSMHGGAVACAVEQACLLSRARNTNQKGELSGPAGVYETDCFVSSVEVRYISAMKGDLQIT 330          
BLAST of jgi.p|Trimin1|347397 vs. uniprot
Match: A0A7S3HAL1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HAL1_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 2.350e-7
Identity = 32/93 (34.41%), Postives = 55/93 (59.14%), Query Frame = 0
Query:  155 HRPGLTVTLTTEMFRKARPGDKLRLESRLTKGGKALGYLEMVAINEACGSLVARGRHVKYLPMGRQWDLVMGSPLLAPLALAMHERDMTRRMA 247
            HRPG++V L TE+ +    GD++ + +   K G  L +  M  +++  G+LVA+G+H+K+LPMG  + ++   PL+ P  L  +E    R+ A
Sbjct:    5 HRPGVSVHLETEVVKSVCAGDEVSILTHTDKIGNTLAFSTMEILDKD-GALVAKGKHIKFLPMGTHFSVIT-HPLVLPWTLNFYEMLQKRKGA 95          
BLAST of jgi.p|Trimin1|347397 vs. uniprot
Match: A0A482STT1_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482STT1_9ARCH)

HSP 1 Score: 61.6 bits (148), Expect = 7.830e-7
Identity = 32/85 (37.65%), Postives = 54/85 (63.53%), Query Frame = 0
Query:  155 HRPGLTVTLTTEMFRKARPGDKLRLESRLTKGGKALGYLEMVAINEACGSLVARGRHVKYLPMGRQWDLVMGSPLLAPLALAMHE 239
            +R G++V LTTE+ + A   + + + +   K GK LG+  M   ++  G+L+A+G+H+K+LPMG  WDLV   P + P+AL  ++
Sbjct:   85 YRGGVSVHLTTELIKPASLNEDVVIHTTADKIGKVLGFCSMEMRSKE-GTLLAKGKHIKFLPMGWLWDLV-SHPAILPIALYFYQ 167          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|347397 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A836CMK8_9STRA5.380e-283100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3H750_9STRA3.040e-1127.46Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S3HAL1_9STRA2.350e-734.41Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A482STT1_9ARCH7.830e-737.65Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.10.129.10Hotdog Thioesterasecoord: 299..379
e-value: 2.3E-5
score: 26.3
NoneNo IPR availableGENE3D3.10.129.10Hotdog Thioesterasecoord: 141..217
e-value: 2.4E-11
score: 45.7
IPR029069HotDog domain superfamilySUPERFAMILY54637Thioesterase/thiol ester dehydrase-isomerasecoord: 308..374
IPR029069HotDog domain superfamilySUPERFAMILY54637Thioesterase/thiol ester dehydrase-isomerasecoord: 148..213

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_11contigContig_11:1032264..1040014 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|347397mRNA_4804Tribonema minus UTEX_B_3156 mRNAContig_11 1032008..1040014 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|347397|estExt_Genemark1.C_Ctg_110119 ID=Trimin1|347397|estExt_Genemark1.C_Ctg_110119|Name=jgi.p|Trimin1|347397|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=423bp
MQPGTVFVFQMPTHREHVVYEAHAVADAVQRHRVAGWTAEDLLDGFEDAF
VLWSIAAAPSGAAAEESAARGNRILPCAGAWQELSKVAAIFGELKGTTVS
AAAAAARGCGGGGKKAVAACALPASLESSHRQLLNVCMQVWSVGYARALG
MASTHRPGLTVTLTTEMFRKARPGDKLRLESRLTKGGKALGYLEMVAINE
ACGSLVARGRHVKYLPMGRQWDLVMGSPLLAPLALAMHERDMTRRMANPM
WMKRNMTRRMANPMRMKGVPEGETLVQQVAPLNLQLDTTLEAGGEHGASG
SAQQRGSAEIIITPQLFNFMGSFHGGAICAAAEQMAAATAPAEVDGKPTW
IQHMETQYFTAQKKRAALTGEYRAGGLAAGCSDVTFLSGGLKMAGSRMQW
GEPPWPERACVVSELEGAVRKF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR029069HotDog_dom_sf