Trimin1|347319|estExt_Genemark1.C_Ctg_100143 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|347319
Unique Name	Trimin1\|347319\|estExt_Genemark1.C_Ctg_100143
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	355

Homology

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BLAST of jgi.p|Trimin1|347319 vs. uniprot
Match: A0A836CRC1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CRC1_9STRA)

HSP 1 Score: 688 bits (1776), Expect = 6.150e-250
Identity = 354/354 (100.00%), Postives = 354/354 (100.00%), Query Frame = 0

Query:    1 MDGGGARLRRPQRTARGAAAAQHEAEDADQAPVTYDAGDSGLLTQALSELRSHWCVVVAMRAVPTPDEQARMHGVLLRAAATAQLGARRGETVRIQALQPASDGDRARAAPPLPKQFYTGRHLGVSAWNPWGARAGRAENGARNARLRRALEALDPQPDGVYDCENADGTRGCGARSGRWTRGPAPTTEANGARKARLRRQLGALDPRPQTASTIADAPRVSTGACACAHVTTSSSAEQQCAAATWTWEDERWEGFIVEYALSSLAAAAGGAKHTRAAPIWGPAREAVLRTARHFQQFAVYEWYPTVWGEGAAAAAAGVGGDAHRHTSVLQVVTPTRTGLQALRSSAVAYAAPA 354
            MDGGGARLRRPQRTARGAAAAQHEAEDADQAPVTYDAGDSGLLTQALSELRSHWCVVVAMRAVPTPDEQARMHGVLLRAAATAQLGARRGETVRIQALQPASDGDRARAAPPLPKQFYTGRHLGVSAWNPWGARAGRAENGARNARLRRALEALDPQPDGVYDCENADGTRGCGARSGRWTRGPAPTTEANGARKARLRRQLGALDPRPQTASTIADAPRVSTGACACAHVTTSSSAEQQCAAATWTWEDERWEGFIVEYALSSLAAAAGGAKHTRAAPIWGPAREAVLRTARHFQQFAVYEWYPTVWGEGAAAAAAGVGGDAHRHTSVLQVVTPTRTGLQALRSSAVAYAAPA
Sbjct:    1 MDGGGARLRRPQRTARGAAAAQHEAEDADQAPVTYDAGDSGLLTQALSELRSHWCVVVAMRAVPTPDEQARMHGVLLRAAATAQLGARRGETVRIQALQPASDGDRARAAPPLPKQFYTGRHLGVSAWNPWGARAGRAENGARNARLRRALEALDPQPDGVYDCENADGTRGCGARSGRWTRGPAPTTEANGARKARLRRQLGALDPRPQTASTIADAPRVSTGACACAHVTTSSSAEQQCAAATWTWEDERWEGFIVEYALSSLAAAAGGAKHTRAAPIWGPAREAVLRTARHFQQFAVYEWYPTVWGEGAAAAAAGVGGDAHRHTSVLQVVTPTRTGLQALRSSAVAYAAPA 354

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BLAST of jgi.p|Trimin1|347319 vs. uniprot
Match: D7G7A8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7A8_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 1.140e-12
Identity = 44/97 (45.36%), Postives = 54/97 (55.67%), Query Frame = 0

Query:  254 EGFIVEYALSSLAAAAGGAKHTRAAPIWGPAREAVLRTARHFQQFAVYEWYPTVWGEGAAAAAAGVGGDAHRHTSVLQVVTPTRTGLQALRSSAVAY 350
            EGF V +   SL+     +   R+ P W  A  +VL  ARHFQQ  V +W+P VWG G          D + HTSVLQ V PTRTGL+AL S+ V Y
Sbjct:   94 EGFTVAFLAGSLSRQEMRSVRERSDPAWAEAETSVLTAARHFQQLTVTKWHPKVWGPGHER-------DENLHTSVLQEVLPTRTGLRALTSAVVVY 183

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|347319 vs. uniprot

BLAST of jgi.p|Trimin1|347319 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A836CRC1_9STRA	6.150e-250	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
D7G7A8_ECTSI	1.140e-12	45.36	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_10	contig	Contig_10:1237267..1239825 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|347319	mRNA_4342	Tribonema minus UTEX_B_3156	mRNA	Contig_10 1237267..1239854 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|347319|estExt_Genemark1.C_Ctg_100143 ID=Trimin1|347319|estExt_Genemark1.C_Ctg_100143|Name=jgi.p|Trimin1|347319|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=355bp
MDGGGARLRRPQRTARGAAAAQHEAEDADQAPVTYDAGDSGLLTQALSEL
RSHWCVVVAMRAVPTPDEQARMHGVLLRAAATAQLGARRGETVRIQALQP
ASDGDRARAAPPLPKQFYTGRHLGVSAWNPWGARAGRAENGARNARLRRA
LEALDPQPDGVYDCENADGTRGCGARSGRWTRGPAPTTEANGARKARLRR
QLGALDPRPQTASTIADAPRVSTGACACAHVTTSSSAEQQCAAATWTWED
ERWEGFIVEYALSSLAAAAGGAKHTRAAPIWGPAREAVLRTARHFQQFAV
YEWYPTVWGEGAAAAAAGVGGDAHRHTSVLQVVTPTRTGLQALRSSAVAY
AAPA*