Trimin1|347318|estExt_Genemark1.C_Ctg_100139 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|347318
Unique NameTrimin1|347318|estExt_Genemark1.C_Ctg_100139
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length522
Homology
BLAST of jgi.p|Trimin1|347318 vs. uniprot
Match: A0A836CPI7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPI7_9STRA)

HSP 1 Score: 803 bits (2073), Expect = 1.390e-289
Identity = 521/521 (100.00%), Postives = 521/521 (100.00%), Query Frame = 0
Query:    1 MKSAHFHNASHACRNNEASVQCAGAGNKVPDAAFCGVAREMLLSAIGPQARAACRPFAAVCHHYSAACIAASAAQDAIAPLWRAAEALAPEDGCLTAVDADLLECCIHAKCYHIGARWLAAHPVYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLPKKAALTCTCSVLPKKTALTPHHLMRYLYYAGVVCIGVKQWRMALDFFHMACTTPAQQLSALAVESRKKAVLVSLLLLGEAPPLPPYAPAPARSMTTHLSAYTAIADAFERDDVAAAARAVHTARDQLTADGNLGLANQAAAARVGRKVLQLTQAYITLSLXXXXXXXXXXXXXXXXXDIATKVGLSGPKEAEAHILRMAPPPHVNAHARVQICTPGGTFTRAFTVLQQVELKLITARIEHLPSGSVGSATVHFADEAEDEATADALARLXXXXXXXXXXXXXXELKATLALAARVRAVDAALSVDPAYVTHASEHAAAGPAXXXXXXXXQAHAWADEDMPNYLT 521
            MKSAHFHNASHACRNNEASVQCAGAGNKVPDAAFCGVAREMLLSAIGPQARAACRPFAAVCHHYSAACIAASAAQDAIAPLWRAAEALAPEDGCLTAVDADLLECCIHAKCYHIGARWLAAHPVYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLPKKAALTCTCSVLPKKTALTPHHLMRYLYYAGVVCIGVKQWRMALDFFHMACTTPAQQLSALAVESRKKAVLVSLLLLGEAPPLPPYAPAPARSMTTHLSAYTAIADAFERDDVAAAARAVHTARDQLTADGNLGLANQAAAARVGRKVLQLTQAYITLSLXXXXXXXXXXXXXXXXXDIATKVGLSGPKEAEAHILRMAPPPHVNAHARVQICTPGGTFTRAFTVLQQVELKLITARIEHLPSGSVGSATVHFADEAEDEATADALARLXXXXXXXXXXXXXXELKATLALAARVRAVDAALSVDPAYVTHASEHAAAGPAXXXXXXXXQAHAWADEDMPNYLT
Sbjct:    1 MKSAHFHNASHACRNNEASVQCAGAGNKVPDAAFCGVAREMLLSAIGPQARAACRPFAAVCHHYSAACIAASAAQDAIAPLWRAAEALAPEDGCLTAVDADLLECCIHAKCYHIGARWLAAHPVYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLPKKAALTCTCSVLPKKTALTPHHLMRYLYYAGVVCIGVKQWRMALDFFHMACTTPAQQLSALAVESRKKAVLVSLLLLGEAPPLPPYAPAPARSMTTHLSAYTAIADAFERDDVAAAARAVHTARDQLTADGNLGLANQAAAARVGRKVLQLTQAYITLSLXXXXXXXXXXXXXXXXXDIATKVGLSGPKEAEAHILRMAPPPHVNAHARVQICTPGGTFTRAFTVLQQVELKLITARIEHLPSGSVGSATVHFADEAEDEATADALARLXXXXXXXXXXXXXXELKATLALAARVRAVDAALSVDPAYVTHASEHAAAGPAXXXXXXXXQAHAWADEDMPNYLT 521          
BLAST of jgi.p|Trimin1|347318 vs. uniprot
Match: A0A6H5KL38_9PHAE (COP9 signalosome complex subunit 3 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KL38_9PHAE)

HSP 1 Score: 152 bits (383), Expect = 5.730e-37
Identity = 127/428 (29.67%), Postives = 182/428 (42.52%), Query Frame = 0
Query:   60 VCHHYSAACIAASAAQDAIAPLWRAAEALAPEDGCLTAVDADLLECCIHAKCYHIGARWLAAHPVYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLPKKAALTCTCSVLPKKTALTPHHLMRYLYYAGVVCIGVKQWRMALDFFHMACTTPAQQLSALAVESRKKAVLVSLLLLGEAPPLPPYAP-APARSMTTHLSAYTAIADAFERDDVAAAARAVHTARDQLTADGNLGLANQAAAARVGRKVLQLTQAYITLSLXXXXXXXXXXXXXXXXXDIATKVGLSGPKEAEAHILRMAPPPHVNAHARVQICTPGGTFTRAFTVLQQVELKLITARIEHLPSGSVGSATVHFADEAEDEATADALARLXXXXXXXXXXXXXXELKATLALAARVRAVDAALSVDPAYV 486
            VC  +   CI+   A +A+ PL  AA  +  +   LT +  + L+CCI AKCY +GAR++   P++                                                              V P  T LTP H +R+ YY G+V +G KQW+ ALD F M  T PA  LS+L VE  KK +LVSL++ G+ PPLP YA  +  R + +H S Y A+   F+  DV     AV    ++ + DGN+GL  QA  A   RK+ +LT  YITL L                 DI+ KVGL+   +A+ +IL M                              VE   I A+I + P+G     TVHF ++    ++    ARL              +L++T  L  RVR ++A L V+P ++
Sbjct:  121 VCKKFGQVCISEGRASEALLPLRSAAIKMDGDRSSLTPLHPEFLQCCIAAKCYSLGARFMDDRPIF-------------------------------------------------------------GVEPVATGLTPVHFLRHFYYGGIVYVGAKQWKDALDSFLMLLTIPANVLSSLVVEGYKKMMLVSLIISGKVPPLPKYASNSVTRHLKSHTSDYEALVSCFQVGDVKGLNAAVVAGSEKFSQDGNMGLVKQAVTALTKRKITELTHTYITLPLS----------------DISDKVGLAHADDAQGYILNM------------------------------VEAGEICAQIAY-PAG-----TVHFREDTNTLSSTTMTARLEA------------DLRSTAELTERVRKLEARLIVNPVFI 423          
BLAST of jgi.p|Trimin1|347318 vs. uniprot
Match: A0A7S2B7S5_9STRA (COP9 signalosome complex subunit 3 n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B7S5_9STRA)

HSP 1 Score: 110 bits (274), Expect = 2.110e-23
Identity = 71/189 (37.57%), Postives = 99/189 (52.38%), Query Frame = 0
Query:  188 VLPKKTALTPHHLMRYLYYAGVVCIGVKQWRMALDFFHMACTTPAQQLSALAVESRKKAVLVSLLLLGEAPPLPPYAPAP-ARSMTTHLSAYTAIADAFERDDVAAAARAVHTARDQLTADGNLGLANQAAAARVGRKVLQLTQAYITLSLXXXXXXXXXXXXXXXXXDIATKVGLSGPKEAEAHILRM 375
            V PK T L     +RY YY G   +G+K +  A++ + +A  TPA  LSA+ VES KK VL+SL+  GE P LPPY   P +R++      Y  +   F  ++       ++ + D+   D N+GLA Q   A   R++ +LT  YITLSL                 DIA  VGL+GP EAEA ++RM
Sbjct:   10 VEPKVTHLKEVDFLRYWYYCGNAYVGLKNFPKAIECYRLAIATPASSLSAVVVESYKKMVLISLIETGEMPVLPPYTSNPVSRALKGVTKTYQTLGQLFTDNNREGLEEEMNKSFDEFDGDNNMGLAKQLLEALTSRRIQRLTHTYITLSLT----------------DIAQNVGLAGPAEAEARLVRM 182          
BLAST of jgi.p|Trimin1|347318 vs. uniprot
Match: A0A1J6ILF1_NICAT (Cop9 signalosome complex subunit 3 n=5 Tax=Nicotiana TaxID=4085 RepID=A0A1J6ILF1_NICAT)

HSP 1 Score: 108 bits (269), Expect = 1.010e-21
Identity = 69/181 (38.12%), Postives = 97/181 (53.59%), Query Frame = 0
Query:  197 PHHLMRYLYYAGVVCIGVKQWRMALDFFHMACTTPAQQLSALAVESRKKAVLVSLLLLGE-APPLPPYAPAPA-RSMTTHLSAYTAIADAFERDDVAAAARAVHTARDQLTADGNLGLANQAAAARVGRKVLQLTQAYITLSLXXXXXXXXXXXXXXXXXDIATKVGLSGPKEAEAHILRM 375
            P     Y YY G+VCIG KQ+R AL+  H   T P   L+A+AVE+ KK +LVSL+ LG+ +   P Y  + A R++ T+   Y  +A ++    +A     V T +++   D NLGL  Q  ++   R + +LTQ Y+TLSL                 DIA  V L GPKEAE H+L+M
Sbjct:  177 PRDFFLYCYYGGMVCIGQKQFRKALELLHNVVTAPMSTLNAIAVEAYKKYILVSLIHLGQFSTSFPKYTSSVAQRNLKTYAQPYLELASSYGSGKIAELETFVQTNKEKFETDNNLGLVMQVVSSMYKRNIQRLTQTYLTLSLQ----------------DIANTVQLRGPKEAEMHVLQM 341          
BLAST of jgi.p|Trimin1|347318 vs. uniprot
Match: A0A6I9UBZ2_SESIN (COP9 signalosome complex subunit 3 n=2 Tax=Lamiales TaxID=4143 RepID=A0A6I9UBZ2_SESIN)

HSP 1 Score: 106 bits (265), Expect = 3.350e-21
Identity = 69/181 (38.12%), Postives = 96/181 (53.04%), Query Frame = 0
Query:  197 PHHLMRYLYYAGVVCIGVKQWRMALDFFHMACTTPAQQLSALAVESRKKAVLVSLLLLGE-APPLPPYAPAPA-RSMTTHLSAYTAIADAFERDDVAAAARAVHTARDQLTADGNLGLANQAAAARVGRKVLQLTQAYITLSLXXXXXXXXXXXXXXXXXDIATKVGLSGPKEAEAHILRM 375
            P  L  Y YY G++CIG KQ+R AL+  H   T P   +SA+AVE+ KK +LVSL+ LG+ +  LP Y  + A R++      Y  +  ++    V+     V T +D+   D NLGL  Q  ++   R + +LTQ Y+TLSL                 DIA  V LS PKEAE H+L+M
Sbjct:  177 PRDLFLYCYYGGMICIGQKQFRKALELLHNVVTAPMPIISAIAVEAYKKYILVSLIHLGQFSTSLPKYTSSAAQRNLKNFSQPYIELVISYSNGKVSELEMCVQTNKDKFETDKNLGLVKQVVSSMYKRNIQRLTQTYLTLSLQ----------------DIANTVQLSSPKEAEMHVLQM 341          
BLAST of jgi.p|Trimin1|347318 vs. uniprot
Match: B9RBM2_RICCO (26S proteasome regulatory subunit S3, putative n=2 Tax=Euphorbiaceae TaxID=3977 RepID=B9RBM2_RICCO)

HSP 1 Score: 105 bits (263), Expect = 6.040e-21
Identity = 67/181 (37.02%), Postives = 98/181 (54.14%), Query Frame = 0
Query:  197 PHHLMRYLYYAGVVCIGVKQWRMALDFFHMACTTPAQQLSALAVESRKKAVLVSLLLLGE-APPLPPYAPAPA-RSMTTHLSAYTAIADAFERDDVAAAARAVHTARDQLTADGNLGLANQAAAARVGRKVLQLTQAYITLSLXXXXXXXXXXXXXXXXXDIATKVGLSGPKEAEAHILRM 375
            P  L  Y YY G+VCIG K++R AL+  H   T P   ++A+AVE+ KK +L SL+  G+ +  LP YA + A R++      Y  +A+++    +A     V T R++  +D NLGL  Q  ++   R + +LTQ Y+TLSL                 DIA  V L+ PKEAE H+L+M
Sbjct:  176 PRDLFLYSYYGGMVCIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILASLIHQGQFSTSLPKYASSAAQRNLKNFCQPYIELANSYSTGKIAELETYVQTNREKFESDNNLGLVKQVVSSMYKRNIQRLTQTYLTLSLQ----------------DIANTVQLNSPKEAEMHVLQM 340          
BLAST of jgi.p|Trimin1|347318 vs. uniprot
Match: A0A4D9B129_SALSN (COP9 signalosome complex subunit 3 n=1 Tax=Salvia splendens TaxID=180675 RepID=A0A4D9B129_SALSN)

HSP 1 Score: 106 bits (264), Expect = 7.090e-21
Identity = 67/181 (37.02%), Postives = 97/181 (53.59%), Query Frame = 0
Query:  197 PHHLMRYLYYAGVVCIGVKQWRMALDFFHMACTTPAQQLSALAVESRKKAVLVSLLLLGE-APPLPPYAPAPA-RSMTTHLSAYTAIADAFERDDVAAAARAVHTARDQLTADGNLGLANQAAAARVGRKVLQLTQAYITLSLXXXXXXXXXXXXXXXXXDIATKVGLSGPKEAEAHILRM 375
            P  L  Y YY G++CIG KQ+R AL+  H   T P   +SA+AVE+ KK +LVSL+ LG+ A   P Y  + A R++     +Y  + +++    V+   + V   +D   +D NLGL  Q  ++   R + +LTQ Y+TLSL                 DIA  V L+ PKEAE H+L+M
Sbjct:  213 PRDLFLYCYYGGMICIGQKQFRKALELLHNVVTAPMPIISAIAVEAYKKYILVSLIHLGQFATSFPKYTSSAAQRNLKNFSQSYLELVNSYSTGKVSEVEKCVEIYKDTFGSDNNLGLVKQVVSSMYKRNIQRLTQTYLTLSLQ----------------DIANTVQLNSPKEAEMHVLQM 377          
BLAST of jgi.p|Trimin1|347318 vs. uniprot
Match: UPI000900DDB2 (COP9 signalosome complex subunit 3-like n=3 Tax=Ipomoea TaxID=4119 RepID=UPI000900DDB2)

HSP 1 Score: 105 bits (262), Expect = 7.900e-21
Identity = 66/181 (36.46%), Postives = 98/181 (54.14%), Query Frame = 0
Query:  197 PHHLMRYLYYAGVVCIGVKQWRMALDFFHMACTTPAQQLSALAVESRKKAVLVSLLLLGE-APPLPPYAPAPA-RSMTTHLSAYTAIADAFERDDVAAAARAVHTARDQLTADGNLGLANQAAAARVGRKVLQLTQAYITLSLXXXXXXXXXXXXXXXXXDIATKVGLSGPKEAEAHILRM 375
            P     Y YY G++CIG KQ+R AL+      T P   L+A+AVE+ KK +LVSL+ LG+ +   P Y  + A R++  +  AY  +A+++    ++     V T +D+  +D NLG+  Q  ++   R + +LTQ Y+TLSL                 DIA  V LS PKEAE H+L+M
Sbjct:  173 PKDFFLYCYYGGMICIGQKQFRKALELLQNVVTAPMSTLNAIAVEAYKKYILVSLIHLGQFSTSFPKYTSSVAQRNLKNYSQAYLELANSYSTGKISELETCVQTHKDKYQSDNNLGIVQQVVSSMYKRNIQRLTQTYLTLSLQ----------------DIAITVQLSSPKEAEMHVLQM 337          
BLAST of jgi.p|Trimin1|347318 vs. uniprot
Match: UPI001F5CD01A (COP9 signalosome complex subunit 3-like n=2 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5CD01A)

HSP 1 Score: 105 bits (261), Expect = 1.090e-20
Identity = 64/180 (35.56%), Postives = 95/180 (52.78%), Query Frame = 0
Query:  197 PHHLMRYLYYAGVVCIGVKQWRMALDFFHMACTTPAQQLSALAVESRKKAVLVSLLLLGEAPPLPPYAPAPA-RSMTTHLSAYTAIADAFERDDVAAAARAVHTARDQLTADGNLGLANQAAAARVGRKVLQLTQAYITLSLXXXXXXXXXXXXXXXXXDIATKVGLSGPKEAEAHILRM 375
            P  L  Y YY G++ IG+K++R AL+  H A T P   L+A+ +E+ KK VLVSL+  G+ P  P YA + A R++  H   Y  ++  +     +     + +  ++   D NLGL  Q  ++   R + +LTQ Y+TLSL                 DIA+ V L+ PKEAE H+LRM
Sbjct:  176 PKDLFLYCYYGGMIYIGLKKFRKALELLHNAVTAPMTSLNAITIEAYKKYVLVSLIQNGQVPSFPKYASSTAQRNLKNHAQIYVDLSTCYGNGSYSELETFIQSNTEKFETDNNLGLVKQVLSSMYKRNIQRLTQTYLTLSLE----------------DIASSVQLNTPKEAEMHVLRM 339          
BLAST of jgi.p|Trimin1|347318 vs. uniprot
Match: A0A0D2Q2Y3_GOSRA (PCI domain-containing protein n=2 Tax=Gossypium raimondii TaxID=29730 RepID=A0A0D2Q2Y3_GOSRA)

HSP 1 Score: 102 bits (254), Expect = 1.630e-20
Identity = 66/181 (36.46%), Postives = 99/181 (54.70%), Query Frame = 0
Query:  197 PHHLMRYLYYAGVVCIGVKQWRMALDFFHMACTTPAQQLSALAVESRKKAVLVSLLLLGEAPP-LPPYAPAPA-RSMTTHLSAYTAIADAFERDDVAAAARAVHTARDQLTADGNLGLANQAAAARVGRKVLQLTQAYITLSLXXXXXXXXXXXXXXXXXDIATKVGLSGPKEAEAHILRM 375
            P  L  + YY G++ IG K +R AL+  H   T P   ++A+AVE+ KK +LVSL+  G++P  LP YA + A R++      Y  +A+++    +A     V   +D+  +D NLGL  QA ++   R + +LTQ Y+TLSL                 DIA +V L+ PKEAE H+L+M
Sbjct:   93 PRDLFLFCYYGGMISIGKKWFRKALELLHNVVTAPMSTVNAIAVEAFKKYILVSLIHHGQSPTNLPKYASSVAQRNLKNLCQPYIELANSYSNGKIADIETYVEANKDKFESDNNLGLVKQAVSSMYKRNIQRLTQTYLTLSLQ----------------DIANRVQLNSPKEAEMHVLQM 257          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|347318 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CPI7_9STRA1.390e-289100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5KL38_9PHAE5.730e-3729.67COP9 signalosome complex subunit 3 n=2 Tax=Ectocar... [more]
A0A7S2B7S5_9STRA2.110e-2337.57COP9 signalosome complex subunit 3 n=1 Tax=Florenc... [more]
A0A1J6ILF1_NICAT1.010e-2138.12Cop9 signalosome complex subunit 3 n=5 Tax=Nicotia... [more]
A0A6I9UBZ2_SESIN3.350e-2138.12COP9 signalosome complex subunit 3 n=2 Tax=Lamiale... [more]
B9RBM2_RICCO6.040e-2137.0226S proteasome regulatory subunit S3, putative n=2... [more]
A0A4D9B129_SALSN7.090e-2137.02COP9 signalosome complex subunit 3 n=1 Tax=Salvia ... [more]
UPI000900DDB27.900e-2136.46COP9 signalosome complex subunit 3-like n=3 Tax=Ip... [more]
UPI001F5CD01A1.090e-2035.56COP9 signalosome complex subunit 3-like n=2 Tax=Lo... [more]
A0A0D2Q2Y3_GOSRA1.630e-2036.46PCI domain-containing protein n=2 Tax=Gossypium ra... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR037753COP9 signalosome complex subunit 3PANTHERPTHR10758:SF1COP9 SIGNALOSOME COMPLEX SUBUNIT 3coord: 28..490
NoneNo IPR availablePANTHERPTHR1075826S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3coord: 28..490

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_10contigContig_10:1198346..1211393 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|347318mRNA_4338Tribonema minus UTEX_B_3156 mRNAContig_10 1198041..1211393 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|347318|estExt_Genemark1.C_Ctg_100139 ID=Trimin1|347318|estExt_Genemark1.C_Ctg_100139|Name=jgi.p|Trimin1|347318|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=522bp
MKSAHFHNASHACRNNEASVQCAGAGNKVPDAAFCGVAREMLLSAIGPQA
RAACRPFAAVCHHYSAACIAASAAQDAIAPLWRAAEALAPEDGCLTAVDA
DLLECCIHAKCYHIGARWLAAHPVYKCYHIGARWLAAHPVYKCYRVGARW
LAAHPVYKCYHVGARWLAAHPVYKVLPKKAALTCTCSVLPKKTALTPHHL
MRYLYYAGVVCIGVKQWRMALDFFHMACTTPAQQLSALAVESRKKAVLVS
LLLLGEAPPLPPYAPAPARSMTTHLSAYTAIADAFERDDVAAAARAVHTA
RDQLTADGNLGLANQAAAARVGRKVLQLTQAYITLSLQAYITLSLQAYIT
LSLQDIATKVGLSGPKEAEAHILRMAPPPHVNAHARVQICTPGGTFTRAF
TVLQQVELKLITARIEHLPSGSVGSATVHFADEAEDEATADALARLQDEA
TVDALARLQGELKATLALAARVRAVDAALSVDPAYVTHASEHAAAGPAAA
AAAAGAQAHAWADEDMPNYLT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR037753CSN3